; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g16410 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16410
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr3:10852001..10852736
RNA-Seq ExpressionMoc03g16410
SyntenyMoc03g16410
Gene Ontology termsNA
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035531.1 uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa]1.1e-4950.23Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKV E   P+ER LMYVD  ++ K +KSTMVDS ATHN  T+ +A+ L L+W+KD G++KAVNSAALPI+G+ KR  +++  WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN  E +P EI +VL  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

KAA0036604.1 polyprotein [Cucumis melo var. makuwa]1.4e-4950.23Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKV E   P+ER LMYVD  ++ K +KSTMVDS ATHN  T+ +A+ L L+W+KD G++KAVNSAALPI+G+ KR  +++  WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN  E +P EI +VL  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

KAA0052270.1 uncharacterized protein E6C27_scaffold207G00960 [Cucumis melo var. makuwa]1.4e-4950.23Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKV E   P+ER LMYVD  ++ K SKSTMVDS ATHN  T+ +A+ L L+W+KD G++K VNSAALPI+G+ KR  +++  WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN +E +P EI +VL  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

KAA0060640.1 uncharacterized protein E6C27_scaffold22G005260 [Cucumis melo var. makuwa]1.3e-5050.7Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKVRE   P+ER LMYVD  ++ K +KSTMVDS ATHN  T+ +A+ L L+W+KD G++KAVNSAALPI+G+ KR  +++R WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN  E +P EI ++L  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]9.1e-5757.75Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  SALQKK  E KEPLER LMYV+  V+ K +KSTMVDS ATHN  T+T+AR L L WDKD GK+KAVNSAALPI+G++KRV +K+ TWSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLVV   DP +V TSIKQPSGVKMISALQLK+G+  DEPTFMAIPV E  N +E++P EIQ+VL  Y DVMP++
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L K+LPP  GID+
Subjt:  LSKSLPPHRGIDY

TrEMBL top hitse value%identityAlignment
A0A5A7SZ91 Polyprotein6.8e-5050.23Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKV E   P+ER LMYVD  ++ K +KSTMVDS ATHN  T+ +A+ L L+W+KD G++KAVNSAALPI+G+ KR  +++  WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN  E +P EI +VL  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

A0A5A7T1S6 Reverse transcriptase domain-containing protein5.2e-5050.23Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKV E   P+ER LMYVD  ++ K +KSTMVDS ATHN  T+ +A+ L L+W+KD G++KAVNSAALPI+G+ KR  +++  WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN  E +P EI +VL  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

A0A5A7UAP7 Reverse transcriptase domain-containing protein6.8e-5050.23Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKV E   P+ER LMYVD  ++ K SKSTMVDS ATHN  T+ +A+ L L+W+KD G++K VNSAALPI+G+ KR  +++  WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN +E +P EI +VL  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

A0A5A7UZV3 Reverse transcriptase6.2e-5150.7Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  S+LQKKVRE   P+ER LMYVD  ++ K +KSTMVDS ATHN  T+ +A+ L L+W+KD G++KAVNSAALPI+G+ KR  +++R WSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLV+ G  P++V T ++QP G+KMISA+QLK+GL+ DEPTFMAIP+   EN  E +P EI ++L  Y DVMP+S
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L KSLPP R ID+
Subjt:  LSKSLPPHRGIDY

A0A6J1DLQ6 uncharacterized protein LOC1110223204.4e-5757.75Show/hide
Query:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---
        ++  SALQKK  E KEPLER LMYV+  V+ K +KSTMVDS ATHN  T+T+AR L L WDKD GK+KAVNSAALPI+G++KRV +K+ TWSG VDF   
Subjt:  IEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRVQLKIRTWSGEVDF---

Query:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES
                                 KCLVV   DP +V TSIKQPSGVKMISALQLK+G+  DEPTFMAIPV E  N +E++P EIQ+VL  Y DVMP++
Subjt:  ------------------------QKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPES

Query:  LSKSLPPHRGIDY
        L K+LPP  GID+
Subjt:  LSKSLPPHRGIDY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCTGAGGTCGAGACAGAAGTTACCGAGACAGACATACCGACCGAAGAGCCTACTGATAACCCTCGCATGGGGCATTGAAATTTCGTCGGCTCTCCAGAAGAAAGT
AAGGGAAGCAAAAGAACCGCTAGAGAGAAGGCTCATGTATGTGGACGTGTTAGTTCACGGTAAAGTTTCTAAGAGTACTATGGTGGACTCTAGAGCCACACACAACGTCA
CGACCAAAACCAAGGCTCGCGGTCTGACTTTACAATGGGATAAAGATCTAGGGAAGATAAAAGCAGTAAACTCCGCGGCCCTCCCCATTGTGGGGATATCAAAAAGGGTC
CAACTGAAGATCAGGACATGGAGCGGCGAAGTAGATTTTCAAAAGTGCCTAGTTGTTATTGGATTTGATCCCACCATTGTTCCGACGAGCATAAAACAACCAAGTGGGGT
TAAGATGATATCAGCTCTGCAGCTGAAGAGGGGTCTTACTCACGATGAACCTACATTTATGGCCATCCCAGTGATCGAAGAAGAGAACGGTAAAGAAGTAATTCCGATTG
AGATTCAACAAGTCCTAGCTAATTATACAGATGTTATGCCCGAAAGCCTGTCAAAGTCCCTACCACCGCATAGGGGAATCGATTACGCTTGTTTACATGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCTGAGGTCGAGACAGAAGTTACCGAGACAGACATACCGACCGAAGAGCCTACTGATAACCCTCGCATGGGGCATTGAAATTTCGTCGGCTCTCCAGAAGAAAGT
AAGGGAAGCAAAAGAACCGCTAGAGAGAAGGCTCATGTATGTGGACGTGTTAGTTCACGGTAAAGTTTCTAAGAGTACTATGGTGGACTCTAGAGCCACACACAACGTCA
CGACCAAAACCAAGGCTCGCGGTCTGACTTTACAATGGGATAAAGATCTAGGGAAGATAAAAGCAGTAAACTCCGCGGCCCTCCCCATTGTGGGGATATCAAAAAGGGTC
CAACTGAAGATCAGGACATGGAGCGGCGAAGTAGATTTTCAAAAGTGCCTAGTTGTTATTGGATTTGATCCCACCATTGTTCCGACGAGCATAAAACAACCAAGTGGGGT
TAAGATGATATCAGCTCTGCAGCTGAAGAGGGGTCTTACTCACGATGAACCTACATTTATGGCCATCCCAGTGATCGAAGAAGAGAACGGTAAAGAAGTAATTCCGATTG
AGATTCAACAAGTCCTAGCTAATTATACAGATGTTATGCCCGAAAGCCTGTCAAAGTCCCTACCACCGCATAGGGGAATCGATTACGCTTGTTTACATGCGTAA
Protein sequenceShow/hide protein sequence
MALRSRQKLPRQTYRPKSLLITLAWGIEISSALQKKVREAKEPLERRLMYVDVLVHGKVSKSTMVDSRATHNVTTKTKARGLTLQWDKDLGKIKAVNSAALPIVGISKRV
QLKIRTWSGEVDFQKCLVVIGFDPTIVPTSIKQPSGVKMISALQLKRGLTHDEPTFMAIPVIEEENGKEVIPIEIQQVLANYTDVMPESLSKSLPPHRGIDYACLHA