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Moc03g16510 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16510
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr3:10941920..10943326
RNA-Seq ExpressionMoc03g16510
SyntenyMoc03g16510
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038389.1 gag/pol protein [Cucumis melo var. makuwa]3.9e-2353.85Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M KG SVQEHV+ MMVH NVA+MN   INE++Q         G +G+ NV TS   
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN

Query:  FHRGLTSGTKSKPSSSG
        FH+G TSGTK  P S G
Subjt:  FHRGLTSGTKSKPSSSG

KAA0054432.1 gag/pol protein [Cucumis melo var. makuwa]3.9e-2334.19Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ-----------------------
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M +G SV+EHV+ MMVH NV EMN A I+E+SQ                       
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ-----------------------

Query:  ----------------------GPEGEPNVVTSNENFHRGLTSGTKSKPSSSGL---------------------------------------NW-RDVL
                              G +GE NV TS   FHRG TSGTKS PSSSG                                        +W R+  
Subjt:  ----------------------GPEGEPNVVTSNENFHRGLTSGTKSKPSSSGL---------------------------------------NW-RDVL

Query:  EVVGGRRDVSQSWNWTDVSQSWNWRDRLYYCGGQ
        + +  ++   Q  +W D   SWNW  RL  C G+
Subjt:  EVVGGRRDVSQSWNWTDVSQSWNWRDRLYYCGGQ

KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-2862.96Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M +G SV+EHV+ MMVH NVAEMN A I+E+SQG +GE NV TS   FHRG TSGT
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT

Query:  KSKPSSSG
        KS PSSSG
Subjt:  KSKPSSSG

TYJ97005.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-2354.7Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M KG SVQEHV+ MMVH NVA+MN A INE+SQ         G +G+ NV TS   
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN

Query:  FHRGLTSGTKSKPSSSG
        FH+G TS TK  P S G
Subjt:  FHRGLTSGTKSKPSSSG

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-2862.96Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M +G SV+EHV+ MMVH NVAEMN A I+E+SQG +GE NV TS   FHRG TSGT
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT

Query:  KSKPSSSG
        KS PSSSG
Subjt:  KSKPSSSG

TrEMBL top hitse value%identityAlignment
A0A5A7TAL1 Gag/pol protein1.9e-2353.85Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M KG SVQEHV+ MMVH NVA+MN   INE++Q         G +G+ NV TS   
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN

Query:  FHRGLTSGTKSKPSSSG
        FH+G TSGTK  P S G
Subjt:  FHRGLTSGTKSKPSSSG

A0A5A7UF91 Gag/pol protein1.9e-2334.19Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ-----------------------
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M +G SV+EHV+ MMVH NV EMN A I+E+SQ                       
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ-----------------------

Query:  ----------------------GPEGEPNVVTSNENFHRGLTSGTKSKPSSSGL---------------------------------------NW-RDVL
                              G +GE NV TS   FHRG TSGTKS PSSSG                                        +W R+  
Subjt:  ----------------------GPEGEPNVVTSNENFHRGLTSGTKSKPSSSGL---------------------------------------NW-RDVL

Query:  EVVGGRRDVSQSWNWTDVSQSWNWRDRLYYCGGQ
        + +  ++   Q  +W D   SWNW  RL  C G+
Subjt:  EVVGGRRDVSQSWNWTDVSQSWNWRDRLYYCGGQ

A0A5A7UYX7 Gag/pol protein2.0e-2862.96Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M +G SV+EHV+ MMVH NVAEMN A I+E+SQG +GE NV TS   FHRG TSGT
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT

Query:  KSKPSSSG
        KS PSSSG
Subjt:  KSKPSSSG

A0A5D3BEX9 Gag/pol protein2.5e-2354.7Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M KG SVQEHV+ MMVH NVA+MN A INE+SQ         G +G+ NV TS   
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQ---------GPEGEPNVVTSNEN

Query:  FHRGLTSGTKSKPSSSG
        FH+G TS TK  P S G
Subjt:  FHRGLTSGTKSKPSSSG

A0A5D3BHG7 Gag/pol protein2.0e-2862.96Show/hide
Query:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT
        ++VLAKK+E+M+TA EI+DSL+EMF + S Q+ H+A K+I+N+ M +G SV+EHV+ MMVH NVAEMN A I+E+SQG +GE NV TS   FHRG TSGT
Subjt:  ADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNENFHRGLTSGT

Query:  KSKPSSSG
        KS PSSSG
Subjt:  KSKPSSSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTAGTCTCAGAGGCCCCTGGACCTGACACCATGAAAGCTGATGTTTTGGCGAAGAAGTATGAGACCATGATAACTGCACTCGAGATTGTGGATTCATTG
CGTGAGATGTTTGAAAAACCTTCCTCACAAGTCATGCATGAAGCTTTCAAATTCATCTTCAACTCACTAATGAAAAAAGGAACATCTGTCCAGGAACATGTTATC
GGTATGATGGTCCACGTCAACGTGGCAGAGATGAATGACGCTACCATCAATGAGTCCAGCCAAGGACCTGAGGGAGAGCCAAATGTTGTCACCTCCAACGAAAAC
TTCCACAGAGGTTTGACCTCTGGGACAAAGTCTAAACCTTCTTCTTCGGGTTTGAACTGGAGAGATGTCCTAGAGGTAGTTGGAGGTCGGAGAGATGTCTCTCAG
AGTTGGAATTGGACAGATGTCTCTCAGAGTTGGAACTGGAGAGATCGTCTCTACTATTGTGGTGGGCAGTGTCAAGTTATTTTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTAGTCTCAGAGGCCCCTGGACCTGACACCATGAAAGCTGATGTTTTGGCGAAGAAGTATGAGACCATGATAACTGCACTCGAGATTGTGGATTCATTG
CGTGAGATGTTTGAAAAACCTTCCTCACAAGTCATGCATGAAGCTTTCAAATTCATCTTCAACTCACTAATGAAAAAAGGAACATCTGTCCAGGAACATGTTATC
GGTATGATGGTCCACGTCAACGTGGCAGAGATGAATGACGCTACCATCAATGAGTCCAGCCAAGGACCTGAGGGAGAGCCAAATGTTGTCACCTCCAACGAAAAC
TTCCACAGAGGTTTGACCTCTGGGACAAAGTCTAAACCTTCTTCTTCGGGTTTGAACTGGAGAGATGTCCTAGAGGTAGTTGGAGGTCGGAGAGATGTCTCTCAG
AGTTGGAATTGGACAGATGTCTCTCAGAGTTGGAACTGGAGAGATCGTCTCTACTATTGTGGTGGGCAGTGTCAAGTTATTTTTCAGTAA
Protein sequenceShow/hide protein sequence
MALVSEAPGPDTMKADVLAKKYETMITALEIVDSLREMFEKPSSQVMHEAFKFIFNSLMKKGTSVQEHVIGMMVHVNVAEMNDATINESSQGPEGEPNVVTSNEN
FHRGLTSGTKSKPSSSGLNWRDVLEVVGGRRDVSQSWNWTDVSQSWNWRDRLYYCGGQCQVIFQ