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Moc03g16530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:10946825..10947516
RNA-Seq ExpressionMoc03g16530
SyntenyMoc03g16530
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]1.7e-4956.87Show/hide
Query:  NPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGS--NRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANV
        N ++ +VEKFDGRI+F LWQVQVK VLIQSGLHKALKGRP+            P  SSD S  ++   +S MSDED + +DLRAAS IR+ LAKN+LAN+
Subjt:  NPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGS--NRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANV

Query:  HGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEV
        HGIST ++LWEKLE LYQ KG+SNR+YLKEQFHTL M E                         DD+D+A RLI S+P SYEHMKPIL++ K+ + F+EV
Subjt:  HGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEV

Query:  TSKLLSEERRL
        TSKL SEERRL
Subjt:  TSKLLSEERRL

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.7e-5256.19Show/hide
Query:  NPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANVHG
        +P++  VEK+DGRI+F LWQVQVK VLIQSGLHKAL+G+P+            P+ S D S  G+ K    DE+ + +DLRAAS IR+ LAKN+LANVHG
Subjt:  NPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANVHG

Query:  IST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEED-------------------------DQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTS
        IST ++LWEKLE LYQ KGISNRLYLKEQFHTLRM+ D                         D+DKA RLILS+  SYEHMKPILMY K+TL +A+VT 
Subjt:  IST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEED-------------------------DQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTS

Query:  KLLSEERRLKSEGRTSHEDSTLVACN
        KLLSEE+RL S G TS E + L+  N
Subjt:  KLLSEERRLKSEGRTSHEDSTLVACN

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]5.8e-5356.19Show/hide
Query:  NPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANVHG
        +P++ DVEK+DGRI+F LWQVQVK VLIQSGLHKAL+G+P+            P+ S D S  G+ K    DE+ + +DLRAAS IR+ LAKN+LANVHG
Subjt:  NPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANVHG

Query:  IST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEED-------------------------DQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTS
        IST ++LWEKLE LYQ KGI NRLYLKEQFHTLRM+ D                         D+DKA RLILS+  SYEHMKPILMY K+TL +A+VT 
Subjt:  IST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEED-------------------------DQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTS

Query:  KLLSEERRLKSEGRTSHEDSTLVACN
        KLLSEE+RL S G TS E + L+  N
Subjt:  KLLSEERRLKSEGRTSHEDSTLVACN

QHN81458.1 Retrovirus-related Pol polyprotein [Arachis hypogaea]1.7e-4953.28Show/hide
Query:  MSFFMNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNIL
        MS + + VK+++EKFDGRI+F LWQ+QVK VLIQSGLHKALK        E++SG                   M DE+ +++DLRAAS IR+ LAKN+L
Subjt:  MSFFMNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNIL

Query:  ANVHGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNF
        ANV GI T +ELW+KLE LYQ+KGISNRL LKEQFH LRM+                          DD+DKA RLILS+P SYE++KP+LMY K+TLNF
Subjt:  ANVHGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNF

Query:  AEVTSKLLSEERRLKSEGRTSHEDSTLVA
         EV SKL++EERR+K+EG TS  D  LVA
Subjt:  AEVTSKLLSEERRLKSEGRTSHEDSTLVA

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]7.7e-8276.19Show/hide
Query:  MSFFMNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNIL
        MSFFM+PVKIDVEKFDG I+F LWQVQVK VLIQS LHKALKGRPSEGASE+LS DGGPM+SS GS+RGSKKSSMS ED ++MDLRAAS IR  LAKNIL
Subjt:  MSFFMNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNIL

Query:  ANVHGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNF
        ANVH IST +ELWEKLEALYQAKGISNRLYLKEQFHTL+MEE                         DD+DKA RLILS+P SYEHMKPILMY KDTLNF
Subjt:  ANVHGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNF

Query:  AEVTSKLLSEERRLKSEGRTSHEDSTLVACN
        AEVTSKLLSEERRLKSEGRTSHEDS LV  N
Subjt:  AEVTSKLLSEERRLKSEGRTSHEDSTLVACN

TrEMBL top hitse value%identityAlignment
A0A6A2YS90 Transcription initiation factor IIA subunit 24.6e-4854.26Show/hide
Query:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI
        + D+EKFDGRI+F LWQVQVK +LIQSGL+KALKG+P+      LS    P K SD S  G K KS MS+E+ +++D+RAAS IR+ LAKN+LANV    
Subjt:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI

Query:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL
        ST+ELWEKLE +YQAK +SNRLYLKE+FH L+MEE                         DD+DKA RLI S+  SYEHM+ +LMY K+ +NF+EVTSKL
Subjt:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL

Query:  LSEERRLKSEGRTSHEDSTLVAC
        +SEERRLK+    S E   L  C
Subjt:  LSEERRLKSEGRTSHEDSTLVAC

A0A6A3BK59 CCHC-type domain-containing protein5.4e-4954.71Show/hide
Query:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI
        + D+EKFDGRI+F LWQVQVK +LIQSGL+KALKG+P+      LS    P K SD S  G K KS MS+E+ +++D+RAAS IR+ LAKN+LANV    
Subjt:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI

Query:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL
        ST+ELWEKLE +YQAK +SNRLYLKE+FH L+MEE                         DD+DKA RLI S+P SYEHM+ +LMY K+ +NF+EVTSKL
Subjt:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL

Query:  LSEERRLKSEGRTSHEDSTLVAC
        +SEERRLK+    S E   L  C
Subjt:  LSEERRLKSEGRTSHEDSTLVAC

A0A6A3CWI3 CCHC-type domain-containing protein5.4e-4954.71Show/hide
Query:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI
        + D+EKFDGRI+F LWQVQVK +LIQSGL+KALKG+P+      LS    P K SD S  G K KS MS+E+ +++D+RAAS IR+ LAKN+LANV    
Subjt:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI

Query:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL
        ST+ELWEKLE +YQAK +SNRLYLKE+FH L+MEE                         DD+DKA RLI S+P SYEHM+ +LMY K+ +NF+EVTSKL
Subjt:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL

Query:  LSEERRLKSEGRTSHEDSTLVAC
        +SEERRLK+    S E   L  C
Subjt:  LSEERRLKSEGRTSHEDSTLVAC

A0A6A3DA47 CCHC-type domain-containing protein2.3e-4754.55Show/hide
Query:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI
        + D+EKFDGRI+F LWQVQVK +LIQSGL+KALKG+P+      L     P K SD S  G K KS MS+E+ +++D+RAAS IR+ LAKN+LANV    
Subjt:  KIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSK-KSSMSDEDLKKMDLRAASVIRIGLAKNILANV-HGI

Query:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL
        ST+ELWEKLE +YQAK +SNRLYLKE+FH L+MEE                         DD+DKA RLI S+P SYEHM+ +LMY K+ +NF+EVTSKL
Subjt:  STEELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKL

Query:  LSEERRLKSEGRTSHEDSTL
        +SEERRLK+    S E   L
Subjt:  LSEERRLKSEGRTSHEDSTL

A0A6J1CG82 uncharacterized protein LOC1110105213.7e-8276.19Show/hide
Query:  MSFFMNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNIL
        MSFFM+PVKIDVEKFDG I+F LWQVQVK VLIQS LHKALKGRPSEGASE+LS DGGPM+SS GS+RGSKKSSMS ED ++MDLRAAS IR  LAKNIL
Subjt:  MSFFMNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNIL

Query:  ANVHGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNF
        ANVH IST +ELWEKLEALYQAKGISNRLYLKEQFHTL+MEE                         DD+DKA RLILS+P SYEHMKPILMY KDTLNF
Subjt:  ANVHGIST-EELWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNF

Query:  AEVTSKLLSEERRLKSEGRTSHEDSTLVACN
        AEVTSKLLSEERRLKSEGRTSHEDS LV  N
Subjt:  AEVTSKLLSEERRLKSEGRTSHEDSTLVACN

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.6e-1930.81Show/hide
Query:  MNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANVH
        M+ VK +V KF+G   FS WQ +++ +LIQ GLHK L                             K  +M  ED   +D RAAS IR+ L+ +++ N+ 
Subjt:  MNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANVH

Query:  GISTEE-LWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVT
           T   +W +LE+LY +K ++N+LYLK+Q + L M E                         +++DKA  L+ S+P SY+++   +++ K T+   +VT
Subjt:  GISTEE-LWEKLEALYQAKGISNRLYLKEQFHTLRMEE-------------------------DDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVT

Query:  SKLLSEERRLK
        S LL  E+  K
Subjt:  SKLLSEERRLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCTTTATGAATCCTGTGAAGATTGACGTGGAGAAATTTGATGGAAGGATCAGCTTCAGCTTGTGGCAAGTGCAAGTCAAGTATGTGCTTATACAATCT
GGGTTACACAAGGCATTGAAGGGAAGACCGAGTGAAGGTGCTTCTGAACAGCTAAGTGGTGATGGTGGTCCAATGAAGTCTAGCGATGGTTCCAACAGAGGTTCT
AAGAAGTCTAGCATGAGTGATGAAGATTTGAAGAAAATGGATTTGAGAGCTGCAAGCGTAATACGAATAGGTTTGGCTAAGAATATTCTTGCGAATGTGCATGGA
ATTTCGACAGAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGTATCTCAAATCGGTTGTACCTGAAGGAGCAGTTTCACACGCTGCGAATGGAG
GAAGATGACCAAGATAAAGCACGCAGGCTCATCTTATCAGTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGAGAAGGATACTTTGAATTTTGCC
GAGGTTACTAGTAAACTCTTGTCAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACATGAAGATTCGACACTGGTAGCTTGCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATTCTTTATGAATCCTGTGAAGATTGACGTGGAGAAATTTGATGGAAGGATCAGCTTCAGCTTGTGGCAAGTGCAAGTCAAGTATGTGCTTATACAATCT
GGGTTACACAAGGCATTGAAGGGAAGACCGAGTGAAGGTGCTTCTGAACAGCTAAGTGGTGATGGTGGTCCAATGAAGTCTAGCGATGGTTCCAACAGAGGTTCT
AAGAAGTCTAGCATGAGTGATGAAGATTTGAAGAAAATGGATTTGAGAGCTGCAAGCGTAATACGAATAGGTTTGGCTAAGAATATTCTTGCGAATGTGCATGGA
ATTTCGACAGAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGTATCTCAAATCGGTTGTACCTGAAGGAGCAGTTTCACACGCTGCGAATGGAG
GAAGATGACCAAGATAAAGCACGCAGGCTCATCTTATCAGTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGAGAAGGATACTTTGAATTTTGCC
GAGGTTACTAGTAAACTCTTGTCAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACATGAAGATTCGACACTGGTAGCTTGCAATTAG
Protein sequenceShow/hide protein sequence
MSFFMNPVKIDVEKFDGRISFSLWQVQVKYVLIQSGLHKALKGRPSEGASEQLSGDGGPMKSSDGSNRGSKKSSMSDEDLKKMDLRAASVIRIGLAKNILANVHG
ISTEELWEKLEALYQAKGISNRLYLKEQFHTLRMEEDDQDKARRLILSVPPSYEHMKPILMYEKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSTLVACN