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Moc03g16910 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16910
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr3:11227350..11235928
RNA-Seq ExpressionMoc03g16910
SyntenyMoc03g16910
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3462361.1 reverse transcriptase [Gossypium australe]6.5e-0931.93Show/hide
Query:  GNYVIESIGCSEGTKIPAIASFHRKMNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDIVQ
        G+ +++ IG  E  K     S+   +    G+ + +R+ L  ++  + + IN EL  PF E+++  ALK + P KAP SDG    FF+  W  +G ++++
Subjt:  GNYVIESIGCSEGTKIPAIASFHRKMNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDIVQ

Query:  CCLGVLNYGFSLAMSNLGD
         CLG+LN G  +  +N+ D
Subjt:  CCLGVLNYGFSLAMSNLGD

KAA3462890.1 reverse transcriptase [Gossypium australe]1.9e-0830.58Show/hide
Query:  NTGNYVIESIGCSEGTKIPAIASFHRKMNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDI
        + G+ +I+ IG  E  K     S+   +    G+ +  ++ L  ++  + + IN EL  PF E+++  ALK + P KAP  DG    FF+  W  +G ++
Subjt:  NTGNYVIESIGCSEGTKIPAIASFHRKMNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDI

Query:  VQCCLGVLNYGFSLAMSNLGD
        ++ CLG+LN G  +  +N+ D
Subjt:  VQCCLGVLNYGFSLAMSNLGD

KAA3489692.1 reverse transcriptase [Gossypium australe]1.9e-0827.06Show/hide
Query:  SLFPLHSVDHLDYFKLDHRPLNPSFAK----------HISIYRSQRTVSDDSRTLGCTMGTARSCGHRVGRWWVALAHLENLAIWKRRYKKKNTGNYVIE
        +LFPL ++ HL Y   DH PL  +  K          H  +Y  QR     +R      G   +            A+  N A  +R          +I 
Subjt:  SLFPLHSVDHLDYFKLDHRPLNPSFAK----------HISIYRSQRTVSDDSRTLGCTMGTARSCGHRVGRWWVALAHLENLAIWKRRYKKKNTGNYVIE

Query:  SIGCSEGTKIPAIASFHRKMNCIM-------GLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDIV
         +   +G +I      H +            G+ N  R  L  VE  +    N +L  PF E+++L ALK + P KAP  DG    FF+  W  +G +++
Subjt:  SIGCSEGTKIPAIASFHRKMNCIM-------GLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDIV

Query:  QCCLGVLNYGFSLAMSNL
          CLGVLN G  +  +N+
Subjt:  QCCLGVLNYGFSLAMSNL

XP_022135946.1 uncharacterized protein LOC111007780 [Momordica charantia]4.8e-1284.31Show/hide
Query:  MSNLGDRPNNGDVEGMEPQEQLLARVMQNVETMINERFYRMKQKLKARDRP
        MSNLGDRPNN DVEGMEPQEQLLARV QNVETMINER  RM+Q L+ARD P
Subjt:  MSNLGDRPNNGDVEGMEPQEQLLARVMQNVETMINERFYRMKQKLKARDRP

XP_030964220.1 uncharacterized protein LOC115985421 [Quercus lobata]1.1e-0837.39Show/hide
Query:  KKKNT--GNYVIESIGCSEGTKIPAIA-SFHRKMNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWV
        K+KNT  G +  + I C     I A A S+ +K+      T  + + ++ +  RV E +N ELT+ F  E++L AL+Q+HPNKAP  DG+   FF + W 
Subjt:  KKKNT--GNYVIESIGCSEGTKIPAIA-SFHRKMNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWV

Query:  TMGLDIVQCCLGVLN
         +G +I+   L VLN
Subjt:  TMGLDIVQCCLGVLN

TrEMBL top hitse value%identityAlignment
A0A5B6X8X5 Reverse transcriptase9.2e-0927.06Show/hide
Query:  SLFPLHSVDHLDYFKLDHRPLNPSFAK----------HISIYRSQRTVSDDSRTLGCTMGTARSCGHRVGRWWVALAHLENLAIWKRRYKKKNTGNYVIE
        +LFPL ++ HL Y   DH PL  +  K          H  +Y  QR     +R      G   +            A+  N A  +R          +I 
Subjt:  SLFPLHSVDHLDYFKLDHRPLNPSFAK----------HISIYRSQRTVSDDSRTLGCTMGTARSCGHRVGRWWVALAHLENLAIWKRRYKKKNTGNYVIE

Query:  SIGCSEGTKIPAIASFHRKMNCIM-------GLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDIV
         +   +G +I      H +            G+ N  R  L  VE  +    N +L  PF E+++L ALK + P KAP  DG    FF+  W  +G +++
Subjt:  SIGCSEGTKIPAIASFHRKMNCIM-------GLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDIV

Query:  QCCLGVLNYGFSLAMSNL
          CLGVLN G  +  +N+
Subjt:  QCCLGVLNYGFSLAMSNL

A0A6J1C253 uncharacterized protein LOC1110077802.3e-1284.31Show/hide
Query:  MSNLGDRPNNGDVEGMEPQEQLLARVMQNVETMINERFYRMKQKLKARDRP
        MSNLGDRPNN DVEGMEPQEQLLARV QNVETMINER  RM+Q L+ARD P
Subjt:  MSNLGDRPNNGDVEGMEPQEQLLARVMQNVETMINERFYRMKQKLKARDRP

A0A6J1DYV9 uncharacterized protein LOC1110255399.2e-0994.59Show/hide
Query:  MSNLGDRPNNGDVEGMEPQEQLLARVMQNVETMINER
        MSNLGDRP N DVEGMEPQEQLLARVMQNVETMINER
Subjt:  MSNLGDRPNNGDVEGMEPQEQLLARVMQNVETMINER

A0A803NHG3 Uncharacterized protein1.4e-0927.51Show/hide
Query:  LECLQQSLFPLHSVDHLDYFKLDHRPLNPSFA--------KHISIYRSQRTVSDDSRTLGCTMGTARSCGHRVGRWWVALAHLENLAIWKRRYKKKNTGN
        LE LQQ  F    +  LD+++ DHR L               I  +R + T    +   G T+        RVGR         +L +W R+ +K++T +
Subjt:  LECLQQSLFPLHSVDHLDYFKLDHRPLNPSFA--------KHISIYRSQRTVSDDSRTLGCTMGTARSCGHRVGRWWVALAHLENLAIWKRRYKKKNTGN

Query:  YVIESIGCSEGTKI------PAIASFHRKMNCIMGLTNQS---------RLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFF
                 E T I        I    RK+N +M    +S            L  V+ +V   +N  L +PF EE+++ A+K++HP KAP  DGL   F+
Subjt:  YVIESIGCSEGTKI------PAIASFHRKMNCIMGLTNQS---------RLALADVECRVDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFF

Query:  RSPWVTMGLDIVQCCLGVLNYGFSLAMSN
        +  W  +  D+V  CL +L+ G  +   N
Subjt:  RSPWVTMGLDIVQCCLGVLNYGFSLAMSN

A0A803QD63 Uncharacterized protein2.6e-1136.5Show/hide
Query:  LAHLENLAIWKRRYKKKNTGNYVIESIGCSEGTKIPAIASFHRK------MNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNK
        L H +N+ +     K++   N    +I   EG K      FHRK       N I GL ++ RL        +  T N +L  PF  ED+  A++ IHP K
Subjt:  LAHLENLAIWKRRYKKKNTGNYVIESIGCSEGTKIPAIASFHRK------MNCIMGLTNQSRLALADVECRVDETINRELTRPFHEEDILMALKQIHPNK

Query:  APVSDGLLGSFFRSPWVTMGLDIVQCCLGVLNYGFSL
        AP SDGL G F+R  W T+G +I + CLG+LN G  +
Subjt:  APVSDGLLGSFFRSPWVTMGLDIVQCCLGVLNYGFSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTACCATTCTTTTCGAGGATGATGCCTATATGAGGGATATTGTCTGGCTTACACATCCTTGCAGGACAAGACCACCTAATTTGGTGAGCTGTAGCTTCTTGCCCAA
TGATCAAGGCTTCCTCGCCAATGATCAAAAGATTACAACTTCTTCGCCAACGATTAAACATCTGCAACATCTTCGCAAACGATCGAGCCTTCTTCGCCAACGATCGAGCG
GCTGCAATATCTTCACCAATGAAAAAGCCTTCTCTGTCGACGATCAAACCTTCTTTGCCATCGATCAAGGGGCTGCAACTTCTTCACCAATGATCAAGCGGCTGCAACTT
CTCCTCCAATCATCATGTGAAGATCCATTTTGGGGGATGACACCTATCATGTTTGAACAATCTGGTGAGTTTTTAGGAAAACGTTCTGGGATTTCCATAAGCGTGCCTAA
CTCTCGTTCGACGGGAAAGAAGCAAAAAATTGATGATGCCAAGGGAGCTAGTTCAATCTCTATTGGTTCAACCGAGATACCTTATGTGTTATTATCGACAGAGGCTGTTA
CTCAGCCCCGCCGGGTGCATGAGGATCTTATTTTGGAATGCCTGCAGCAGTCTCTTTTTCCGTTGCATTCTGTTGACCATCTGGACTATTTCAAACTAGATCATCGACCA
CTAAACCCTTCTTTTGCTAAGCACATTAGCATCTACCGTTCTCAGCGCACTGTATCCGACGATTCGAGGACACTTGGTTGCACCATGGGAACTGCACGGAGTTGTGGTCA
TCGGGTTGGTCGATGGTGGGTAGCGTTAGCTCATCTTGAGAACCTCGCTATCTGGAAACGACGTTATAAGAAGAAAAATACTGGAAACTACGTTATAGAGAGTATTGGTT
GCAGTGAGGGGACAAAAATACCCGCTATCGCCTCTTTTCATCGGAAAATGAATTGTATTATGGGCCTTACTAATCAGTCTAGGTTGGCTTTAGCTGATGTTGAATGTCGA
GTCGATGAGACGATTAATAGGGAATTGACCCGGCCGTTTCACGAAGAGGATATTTTGATGGCACTCAAGCAAATCCATCCGAATAAAGCGCCTGTGTCCGATGGGCTTCT
TGGGTCGTTCTTTCGTAGTCCATGGGTAACCATGGGCCTTGATATTGTCCAGTGTTGTTTGGGGGTGTTGAATTACGGATTCTCGCTAGCGATGTCAAACTTAGGAGATA
GACCTAATAATGGAGATGTAGAAGGAATGGAACCACAAGAACAACTCCTTGCGAGAGTCATGCAAAATGTGGAGACCATGATCAATGAGAGGTTTTATAGGATGAAGCAA
AAACTTAAAGCTAGGGATAGACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTACCATTCTTTTCGAGGATGATGCCTATATGAGGGATATTGTCTGGCTTACACATCCTTGCAGGACAAGACCACCTAATTTGGTGAGCTGTAGCTTCTTGCCCAA
TGATCAAGGCTTCCTCGCCAATGATCAAAAGATTACAACTTCTTCGCCAACGATTAAACATCTGCAACATCTTCGCAAACGATCGAGCCTTCTTCGCCAACGATCGAGCG
GCTGCAATATCTTCACCAATGAAAAAGCCTTCTCTGTCGACGATCAAACCTTCTTTGCCATCGATCAAGGGGCTGCAACTTCTTCACCAATGATCAAGCGGCTGCAACTT
CTCCTCCAATCATCATGTGAAGATCCATTTTGGGGGATGACACCTATCATGTTTGAACAATCTGGTGAGTTTTTAGGAAAACGTTCTGGGATTTCCATAAGCGTGCCTAA
CTCTCGTTCGACGGGAAAGAAGCAAAAAATTGATGATGCCAAGGGAGCTAGTTCAATCTCTATTGGTTCAACCGAGATACCTTATGTGTTATTATCGACAGAGGCTGTTA
CTCAGCCCCGCCGGGTGCATGAGGATCTTATTTTGGAATGCCTGCAGCAGTCTCTTTTTCCGTTGCATTCTGTTGACCATCTGGACTATTTCAAACTAGATCATCGACCA
CTAAACCCTTCTTTTGCTAAGCACATTAGCATCTACCGTTCTCAGCGCACTGTATCCGACGATTCGAGGACACTTGGTTGCACCATGGGAACTGCACGGAGTTGTGGTCA
TCGGGTTGGTCGATGGTGGGTAGCGTTAGCTCATCTTGAGAACCTCGCTATCTGGAAACGACGTTATAAGAAGAAAAATACTGGAAACTACGTTATAGAGAGTATTGGTT
GCAGTGAGGGGACAAAAATACCCGCTATCGCCTCTTTTCATCGGAAAATGAATTGTATTATGGGCCTTACTAATCAGTCTAGGTTGGCTTTAGCTGATGTTGAATGTCGA
GTCGATGAGACGATTAATAGGGAATTGACCCGGCCGTTTCACGAAGAGGATATTTTGATGGCACTCAAGCAAATCCATCCGAATAAAGCGCCTGTGTCCGATGGGCTTCT
TGGGTCGTTCTTTCGTAGTCCATGGGTAACCATGGGCCTTGATATTGTCCAGTGTTGTTTGGGGGTGTTGAATTACGGATTCTCGCTAGCGATGTCAAACTTAGGAGATA
GACCTAATAATGGAGATGTAGAAGGAATGGAACCACAAGAACAACTCCTTGCGAGAGTCATGCAAAATGTGGAGACCATGATCAATGAGAGGTTTTATAGGATGAAGCAA
AAACTTAAAGCTAGGGATAGACCTTAA
Protein sequenceShow/hide protein sequence
MVTILFEDDAYMRDIVWLTHPCRTRPPNLVSCSFLPNDQGFLANDQKITTSSPTIKHLQHLRKRSSLLRQRSSGCNIFTNEKAFSVDDQTFFAIDQGAATSSPMIKRLQL
LLQSSCEDPFWGMTPIMFEQSGEFLGKRSGISISVPNSRSTGKKQKIDDAKGASSISIGSTEIPYVLLSTEAVTQPRRVHEDLILECLQQSLFPLHSVDHLDYFKLDHRP
LNPSFAKHISIYRSQRTVSDDSRTLGCTMGTARSCGHRVGRWWVALAHLENLAIWKRRYKKKNTGNYVIESIGCSEGTKIPAIASFHRKMNCIMGLTNQSRLALADVECR
VDETINRELTRPFHEEDILMALKQIHPNKAPVSDGLLGSFFRSPWVTMGLDIVQCCLGVLNYGFSLAMSNLGDRPNNGDVEGMEPQEQLLARVMQNVETMINERFYRMKQ
KLKARDRP