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Moc03g16930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:11250780..11251337
RNA-Seq ExpressionMoc03g16930
SyntenyMoc03g16930
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7561662.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]1.8e-2939.77Show/hide
Query:  GVLKFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNI
        G+ KF G +F+FW+MQ++D L   K+H+ L  +P +M  ++W  +D Q +  IR++LS NV   V  E   + L+K     Y+KPS N K+      F++
Subjt:  GVLKFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNI

Query:  RMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        +MEEG  V +H+NE   I+N+L  + ++ D+EV+A+  +  LPN+WE M+ AVSNS+ +  LKF+   D  L EEV
Subjt:  RMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

KAG7584790.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]1.1e-2940.34Show/hide
Query:  GVLKFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNI
        G+ KF G +F+FW+MQ++D L   K+H+ L  +P +M  ++W  +D Q +  IR++LS NV   V  E   + L+K     Y+KPS N K+      F++
Subjt:  GVLKFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNI

Query:  RMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        +MEEG  V +H+NE   I+N+L  + ++ D+EV+A+  L  LPN+WE M+ AVSNS+ +  LKF+   D  L EEV
Subjt:  RMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

KAG7593230.1 Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]1.1e-2940.34Show/hide
Query:  GVLKFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNI
        G+ KF G +F+FW+MQ++D L   K+H+ L  +P +M  ++W  +D Q +  IR++LS NV   V  E   + L+K     Y+KPS N K+      F++
Subjt:  GVLKFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNI

Query:  RMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        +MEEG  V +H+NE   I+N+L  + ++ D+EV+A+  L  LPN+WE M+ AVSNS+ +  LKF+   D  L EEV
Subjt:  RMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

VFQ60264.1 unnamed protein product [Cuscuta campestris]5.8e-2840.46Show/hide
Query:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME
        KF G +FS+WKMQ++DLL    +   LGD+P +M++ DW  +D +A+  IR+SL+ NV   ++ E  AKE+++A    Y+KPS   K+       N +M+
Subjt:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME

Query:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        EGTSV  HIN+L  IL +L  +G+K D+EV+A+  L+ LP++W    TAV+ S+  +   F    D  L E+V
Subjt:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

VFQ71379.1 unnamed protein product [Cuscuta campestris]2.6e-2841.62Show/hide
Query:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME
        KF G +FS+WKMQ++DLL    ++  LGD+P +M++ DW  +D +A+  IR+SL+ NV   ++ E  AK +L A    Y+KPS   K+       N RM+
Subjt:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME

Query:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        EGTSV  HIN+L  IL +L  +G+K D+EVKA+  L+ LP++W    TAV+ S+  +   F    D  L E+V
Subjt:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

TrEMBL top hitse value%identityAlignment
A0A0D3AEM1 CCHC-type domain-containing protein4.3e-2940.46Show/hide
Query:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME
        KF G +++FW+MQ++D L   K+H+ L  +P +M   +W+ +D Q +  IR++LS NV   VV E   + L+K     Y+KPS N+K+      F+++ME
Subjt:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME

Query:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        EG  V +HINE   I+N+L  + ++ ++EV+A+  L  LPN+WE+M+ AVSNS+    LKF    D  L EEV
Subjt:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

A0A0D3CS45 Uncharacterized protein1.9e-2941.04Show/hide
Query:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME
        KF G NF+FW+MQ++D L   K+H+ L  +P +M   +W+ +D Q +  IR++LS NV   V  E I + L+K     Y+KPS N K+      F+++ME
Subjt:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME

Query:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        EG  V +H+NE   I+N+L  + ++ ++EV+A+  L  LPN+WE M+ AVSNS+    LKF    D  L EEV
Subjt:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

A0A2N9GIS0 Uncharacterized protein9.6e-2940.68Show/hide
Query:  GVLKFTGHNFSFWKMQLKDLLTCNKIH-KTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKI---LHPFN
        G+ KF G +F +W+MQ++D L   K+H   LG++P +M + +W  +D Q ++ IR++LS  V   VV E    EL+ A  G Y+KPS N K+      FN
Subjt:  GVLKFTGHNFSFWKMQLKDLLTCNKIH-KTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKI---LHPFN

Query:  IRMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        ++M EGT+V  H+NE   I N+L  + ++ D+E++A+  L  LPN+WE M+ AVSNS     LK+    D  L EEV
Subjt:  IRMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

A0A2N9HTG0 Uncharacterized protein9.6e-2940.68Show/hide
Query:  GVLKFTGHNFSFWKMQLKDLLTCNKIH-KTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKI---LHPFN
        G+ KF G +F +W+MQ++D L   K+H   LG++P +M + +W  +D Q ++ IR++LS  V   VV E    EL+ A  G Y+KPS N K+      FN
Subjt:  GVLKFTGHNFSFWKMQLKDLLTCNKIH-KTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKI---LHPFN

Query:  IRMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        ++M EGT+V  H+NE   I N+L  + ++ D+E++A+  L  LPN+WE M+ AVSNS     LK+    D  L EEV
Subjt:  IRMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

A0A484L4X7 CCHC-type domain-containing protein1.3e-2841.62Show/hide
Query:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME
        KF G +FS+WKMQ++DLL    ++  LGD+P +M++ DW  +D +A+  IR+SL+ NV   ++ E  AK +L A    Y+KPS   K+       N RM+
Subjt:  KFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HPFNIRME

Query:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV
        EGTSV  HIN+L  IL +L  +G+K D+EVKA+  L+ LP++W    TAV+ S+  +   F    D  L E+V
Subjt:  EGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.3e-1832.69Show/hide
Query:  VLKFTGHN-FSFWKMQLKDLLTCNKIHKTL---GDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HP
        V KF G N FS W+ +++DLL    +HK L     +P  M  +DW D+DE+A   IR+ LS +V + +++E  A+ +    +  Y   ++  K+      
Subjt:  VLKFTGHN-FSFWKMQLKDLLTCNKIHKTL---GDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKIL---HP

Query:  FNIRMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAV
        + + M EGT+  SH+N    ++ +L  +GVKI+EE KA+  L  LP++++ + T +
Subjt:  FNIRMEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACAAATATCACGCAAACCATTATTATGAAGGGGTTCTGAAGTTCACAGGACATAATTTCAGTTTTTGGAAGATGCAGTTAAAAGATCTTCTTACGTGCAATAA
GATACACAAGACTTTGGGGGATAGACCAGTGGAGATGACGAACAAGGATTGGAAAGATATGGATGAGCAGGCCGTTCTGAACATCAGAATGTCTTTATCGATGAATGTTT
GCAGTCCCGTGGTGAATGAGACGATTGCAAAAGAGTTGTTGAAGGCCTTTCAAGGCAGGTATAAAAAACCGTCTGTCAATACAAAAATACTTCATCCTTTTAATATCCGC
ATGGAGGAGGGAACCTCGGTGAATTCCCACATTAATGAGCTCACCGATATCTTGAATAAATTAAAAGGGATGGGTGTCAAGATTGATGAGGAGGTGAAGGCTATGAGGTC
GTTAACATATTTGCCTAACAATTGGGAGACGATGAAGACAGCGGTGTCGAATTCGTTAAGGGACAATACCTTGAAATTTTTAGCTACTTGCGATACCGCCTTATATGAGG
AAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGACAAATATCACGCAAACCATTATTATGAAGGGGTTCTGAAGTTCACAGGACATAATTTCAGTTTTTGGAAGATGCAGTTAAAAGATCTTCTTACGTGCAATAA
GATACACAAGACTTTGGGGGATAGACCAGTGGAGATGACGAACAAGGATTGGAAAGATATGGATGAGCAGGCCGTTCTGAACATCAGAATGTCTTTATCGATGAATGTTT
GCAGTCCCGTGGTGAATGAGACGATTGCAAAAGAGTTGTTGAAGGCCTTTCAAGGCAGGTATAAAAAACCGTCTGTCAATACAAAAATACTTCATCCTTTTAATATCCGC
ATGGAGGAGGGAACCTCGGTGAATTCCCACATTAATGAGCTCACCGATATCTTGAATAAATTAAAAGGGATGGGTGTCAAGATTGATGAGGAGGTGAAGGCTATGAGGTC
GTTAACATATTTGCCTAACAATTGGGAGACGATGAAGACAGCGGTGTCGAATTCGTTAAGGGACAATACCTTGAAATTTTTAGCTACTTGCGATACCGCCTTATATGAGG
AAGTTTGA
Protein sequenceShow/hide protein sequence
MGDKYHANHYYEGVLKFTGHNFSFWKMQLKDLLTCNKIHKTLGDRPVEMTNKDWKDMDEQAVLNIRMSLSMNVCSPVVNETIAKELLKAFQGRYKKPSVNTKILHPFNIR
MEEGTSVNSHINELTDILNKLKGMGVKIDEEVKAMRSLTYLPNNWETMKTAVSNSLRDNTLKFLATCDTALYEEV