; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g16950 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16950
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr3:11255296..11259866
RNA-Seq ExpressionMoc03g16950
SyntenyMoc03g16950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015461.1 Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2251.16Show/hide
Query:  QDHV------ALRSPGAITDRAWVGPSSVDQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSSA-HTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAV
        +DH+      A  SP A+ +      S  + +V   +K T+DVL RF  LSAK C+TP+ L++A +  +LCS  DAKN R  +GALHYLTFSRP+I+F V
Subjt:  QDHV------ALRSPGAITDRAWVGPSSVDQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSSA-HTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAV

Query:  SKLSQHLHSPTDEHLVAAKRVLRYLRGPL
        SKLSQ++H+ +D HLVAAKR+LRYL G L
Subjt:  SKLSQHLHSPTDEHLVAAKRVLRYLRGPL

XP_022143489.1 uncharacterized protein LOC111013365 [Momordica charantia]1.9e-2541.05Show/hide
Query:  SKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL--NKLVN
        +KYT+DVL RFG+LSAKPC+TP++LSS     + CS  D +NYRSL+G+LHYLTF+RP+IAFAV KLSQ +H+P + HLVAAKR+LRYL G L  + +  
Subjt:  SKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL--NKLVN

Query:  SSFINEENSLIFLRDYYRDVGAMLSAQALVVLWLTIYYFFASIVDLVYAKNMTGYDLVKVGHKESSTYSRYDLRENMTCFSGMTARRAWV
         S  N         D+  D     S    V+                      G + +  G K+ ST SR        C +   A   WV
Subjt:  SSFINEENSLIFLRDYYRDVGAMLSAQALVVLWLTIYYFFASIVDLVYAKNMTGYDLVKVGHKESSTYSRYDLRENMTCFSGMTARRAWV

XP_022151604.1 uncharacterized protein LOC111019517 [Momordica charantia]5.4e-41100Show/hide
Query:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG
        SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG
Subjt:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG

XP_022152156.1 uncharacterized protein LOC111019945 [Momordica charantia]4.2e-2565.66Show/hide
Query:  LVDKASKYTKDVLTRFGMLSAKPCSTPIAL-SSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLN
        LV++A KYT+D+L RFGMLSAKPCSTP+AL +S+     CS  DA+NYRSL+GA +YLTFSRP+IAF+VSKLSQH+H P   HL AAKR+LRYL G ++
Subjt:  LVDKASKYTKDVLTRFGMLSAKPCSTPIAL-SSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLN

XP_022154318.1 uncharacterized protein LOC111021613 [Momordica charantia]4.3e-2257.01Show/hide
Query:  VGPSSVDQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLR
        V  SS+   V++A KY +DVL RFGML++KPC T IAL++ +   S C+  DA NY ++VGAL YLTFSRP+IAF+V KLSQH+H+P   HL+ AKRVLR
Subjt:  VGPSSVDQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLR

Query:  YLRGPLN
        Y+ G L+
Subjt:  YLRGPLN

TrEMBL top hitse value%identityAlignment
A0A6J1CPG5 uncharacterized protein LOC1110133659.1e-2641.05Show/hide
Query:  SKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL--NKLVN
        +KYT+DVL RFG+LSAKPC+TP++LSS     + CS  D +NYRSL+G+LHYLTF+RP+IAFAV KLSQ +H+P + HLVAAKR+LRYL G L  + +  
Subjt:  SKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL--NKLVN

Query:  SSFINEENSLIFLRDYYRDVGAMLSAQALVVLWLTIYYFFASIVDLVYAKNMTGYDLVKVGHKESSTYSRYDLRENMTCFSGMTARRAWV
         S  N         D+  D     S    V+                      G + +  G K+ ST SR        C +   A   WV
Subjt:  SSFINEENSLIFLRDYYRDVGAMLSAQALVVLWLTIYYFFASIVDLVYAKNMTGYDLVKVGHKESSTYSRYDLRENMTCFSGMTARRAWV

A0A6J1DCC6 uncharacterized protein LOC1110194284.7e-2263.83Show/hide
Query:  SKYTKDVLTRFGMLSAKPCSTPIAL-SSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLN
        +KYT D+L RFGML AK C+TPIAL + A+T    S  +AKNY++L+GAL YLTF RP+I F+VSKLSQ +H P+D HL AAKRVLRYL G LN
Subjt:  SKYTKDVLTRFGMLSAKPCSTPIAL-SSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLN

A0A6J1DDJ2 uncharacterized protein LOC1110195172.6e-41100Show/hide
Query:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG
        SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG
Subjt:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG

A0A6J1DGS4 uncharacterized protein LOC1110199452.0e-2565.66Show/hide
Query:  LVDKASKYTKDVLTRFGMLSAKPCSTPIAL-SSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLN
        LV++A KYT+D+L RFGMLSAKPCSTP+AL +S+     CS  DA+NYRSL+GA +YLTFSRP+IAF+VSKLSQH+H P   HL AAKR+LRYL G ++
Subjt:  LVDKASKYTKDVLTRFGMLSAKPCSTPIAL-SSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLN

A0A6J1DK06 uncharacterized protein LOC1110216132.1e-2257.01Show/hide
Query:  VGPSSVDQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLR
        V  SS+   V++A KY +DVL RFGML++KPC T IAL++ +   S C+  DA NY ++VGAL YLTFSRP+IAF+V KLSQH+H+P   HL+ AKRVLR
Subjt:  VGPSSVDQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSS-AHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLR

Query:  YLRGPLN
        Y+ G L+
Subjt:  YLRGPLN

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.7e-0634.75Show/hide
Query:  DQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKN-YRSLVGALHYLTF-SRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGP
        D++    S Y K +L++F M +    STP+  S  +   L SD D     RSL+G L Y+   +RP++  AV+ LS++      E     KRVLRYL+G 
Subjt:  DQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKN-YRSLVGALHYLTF-SRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGP

Query:  LN-KLVNSSFINEENSLI
        ++ KL+    +  EN +I
Subjt:  LN-KLVNSSFINEENSLI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-0842.27Show/hide
Query:  KYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLC-SDADAKN------YRSLVGALHY-LTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG
        KY + VL RF M +AKP STP+A     +  +C +  + K       Y S VG+L Y +  +RP+IA AV  +S+ L +P  EH  A K +LRYLRG
Subjt:  KYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLC-SDADAKN------YRSLVGALHY-LTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.8e-0844.87Show/hide
Query:  VVDTTASVHVASDRLWFSSFTAGDYGWVRMVNESISKVKGIGDICLKAGEGVELVLRGVRRESASREKTTVGTKVKSD
        VVDT AS H    R  F  + AGD+G V+M N S SK+ GIGDIC+K   G  LVL+ VR     R     G  +  D
Subjt:  VVDTTASVHVASDRLWFSSFTAGDYGWVRMVNESISKVKGIGDICLKAGEGVELVLRGVRRESASREKTTVGTKVKSD

P92519 Uncharacterized mitochondrial protein AtMg008101.7e-1342.39Show/hide
Query:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL
        +KY + +L   GML  KP STP+ L    + S     D  ++RS+VGAL YLT +RP+I++AV+ + Q +H PT       KRVLRY++G +
Subjt:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.7e-1644.86Show/hide
Query:  KYTKDVLTRFGMLSAKPCSTPIALS-SAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLNKLVNSSF
        +Y  D+L R  M++AKP +TP+A S      S     D   YR +VG+L YL F+RP+I++AV++LSQ +H PT+EHL A KR+LRYL G  N   +  F
Subjt:  KYTKDVLTRFGMLSAKPCSTPIALS-SAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLNKLVNSSF

Query:  INEENSL
        + + N+L
Subjt:  INEENSL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.7e-1651.11Show/hide
Query:  KYTKDVLTRFGMLSAKPCSTPIALSSAHT-SSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG
        +YT D+L R  ML+AKP +TP+A S   T  S     D   YR +VG+L YL F+RP++++AV++LSQ++H PTD+H  A KRVLRYL G
Subjt:  KYTKDVLTRFGMLSAKPCSTPIALSSAHT-SSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRG

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.1e-1040.62Show/hide
Query:  KYTKDVLTRFGMLSAKPCSTPIALS---SAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLNK
        KY  D+L   G+L  KP S P+  S   SAH+       DAK YR L+G L YL  +R +I+FAV+KLSQ   +P   H  A  ++L Y++G + +
Subjt:  KYTKDVLTRFGMLSAKPCSTPIALS---SAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPLNK

ATMG00810.1 DNA/RNA polymerases superfamily protein1.2e-1442.39Show/hide
Query:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL
        +KY + +L   GML  KP STP+ L    + S     D  ++RS+VGAL YLT +RP+I++AV+ + Q +H PT       KRVLRY++G +
Subjt:  SKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCACGGGTTCGAGTCTAGGTGGTACAAGTCGTGGGTCACCTCTATTCAGCCGAAACGTCGCCCAACCACCACCGGAGCCGCCGATGCAGGCTGAAATGATT
GGGCGTCTACTTGTCCTCCTGCCACATGTTGCTGCTCGATGGGGATGGTGGTGCGTCGCGGTGGGAGCGGTCGTCGGTGAAGAAGCGCGCTGTGTTGCTGGTTTG
CGAACAAGAAGACGACAGAGGGGGCTGGCGGCTTCAATGGTGAAGAAGAAGAAAGGGAAGTCGGTAGTGGACACTACAGCATCAGTGCACGTTGCTTCAGACAGA
CTTTGGTTCTCATCTTTTACTGCAGGTGATTATGGCTGGGTGAGGATGGTGAATGAGAGTATCTCCAAGGTAAAAGGAATTGGAGATATTTGTTTGAAGGCAGGC
GAAGGGGTCGAGTTGGTGCTACGAGGCGTAAGGCGAGAGAGTGCATCAAGGGAGAAGACTACAGTTGGTACAAAAGTCAAGAGTGACGTCTCTAGAAAGGCAACG
GACATGAGTAGGAGTGCCAAATCATCAGGGGAATCATCCTTCAGAGCATCTGGGAGGCAAGACCACGTAGCATTACGCAGTCCTGGGGCAATCACAGACAGAGCT
TGGGTAGGGCCAAGTAGTGTGGATCAGTTGGTTGATAAAGCATCTAAATACACCAAAGATGTCTTAACTCGTTTTGGCATGCTTAGTGCCAAGCCATGTTCCACA
CCAATTGCCTTAAGCAGTGCTCATACGAGTTCTCTTTGTTCTGATGCGGATGCCAAGAATTATCGGTCTTTAGTTGGGGCACTGCATTACTTAACCTTTAGCAGA
CCAAACATAGCATTTGCTGTTAGCAAGCTCTCTCAGCACTTGCATTCACCCACTGATGAGCATTTAGTAGCTGCCAAACGAGTCCTTCGCTATTTGCGTGGGCCT
TTAAATAAGCTTGTAAATTCTTCTTTCATTAATGAGGAGAACTCTCTTATTTTCTTGAGAGATTATTACAGAGATGTTGGGGCAATGCTCTCAGCTCAAGCCTTG
GTGGTTCTTTGGTTGACGATTTATTACTTTTTCGCTTCTATCGTTGATCTTGTTTATGCAAAAAATATGACGGGGTATGACCTGGTCAAGGTCGGCCACAAGGAG
AGCTCGACCTACTCCAGGTATGACCTTCGGGAGAACATGACCTGCTTTTCAGGTATGACCGCAAGAAGAGCTTGGGTTTCCTTGGAAAGGGATGACCAGCTCAAA
GGGTCAAGGTCGGCTGACTGGGATGAGCTTGTTGTTCCTCCCATGAATGATCTTCAGGGAAGACCTTCAGATCGGCCTTTACGGAAGGCCTTAGGTCGGCCATTA
GGCAAGGCCTTCAAGTCGGCCCTCGGGGGAGCTCTTCAGGTCGGCCCTCAGTGGAGCTCTTCAGGTCGACCCTTAGTGGAGCTCTTTAGGTCGACCCTCAGTGGA
GCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCACGGGTTCGAGTCTAGGTGGTACAAGTCGTGGGTCACCTCTATTCAGCCGAAACGTCGCCCAACCACCACCGGAGCCGCCGATGCAGGCTGAAATGATT
GGGCGTCTACTTGTCCTCCTGCCACATGTTGCTGCTCGATGGGGATGGTGGTGCGTCGCGGTGGGAGCGGTCGTCGGTGAAGAAGCGCGCTGTGTTGCTGGTTTG
CGAACAAGAAGACGACAGAGGGGGCTGGCGGCTTCAATGGTGAAGAAGAAGAAAGGGAAGTCGGTAGTGGACACTACAGCATCAGTGCACGTTGCTTCAGACAGA
CTTTGGTTCTCATCTTTTACTGCAGGTGATTATGGCTGGGTGAGGATGGTGAATGAGAGTATCTCCAAGGTAAAAGGAATTGGAGATATTTGTTTGAAGGCAGGC
GAAGGGGTCGAGTTGGTGCTACGAGGCGTAAGGCGAGAGAGTGCATCAAGGGAGAAGACTACAGTTGGTACAAAAGTCAAGAGTGACGTCTCTAGAAAGGCAACG
GACATGAGTAGGAGTGCCAAATCATCAGGGGAATCATCCTTCAGAGCATCTGGGAGGCAAGACCACGTAGCATTACGCAGTCCTGGGGCAATCACAGACAGAGCT
TGGGTAGGGCCAAGTAGTGTGGATCAGTTGGTTGATAAAGCATCTAAATACACCAAAGATGTCTTAACTCGTTTTGGCATGCTTAGTGCCAAGCCATGTTCCACA
CCAATTGCCTTAAGCAGTGCTCATACGAGTTCTCTTTGTTCTGATGCGGATGCCAAGAATTATCGGTCTTTAGTTGGGGCACTGCATTACTTAACCTTTAGCAGA
CCAAACATAGCATTTGCTGTTAGCAAGCTCTCTCAGCACTTGCATTCACCCACTGATGAGCATTTAGTAGCTGCCAAACGAGTCCTTCGCTATTTGCGTGGGCCT
TTAAATAAGCTTGTAAATTCTTCTTTCATTAATGAGGAGAACTCTCTTATTTTCTTGAGAGATTATTACAGAGATGTTGGGGCAATGCTCTCAGCTCAAGCCTTG
GTGGTTCTTTGGTTGACGATTTATTACTTTTTCGCTTCTATCGTTGATCTTGTTTATGCAAAAAATATGACGGGGTATGACCTGGTCAAGGTCGGCCACAAGGAG
AGCTCGACCTACTCCAGGTATGACCTTCGGGAGAACATGACCTGCTTTTCAGGTATGACCGCAAGAAGAGCTTGGGTTTCCTTGGAAAGGGATGACCAGCTCAAA
GGGTCAAGGTCGGCTGACTGGGATGAGCTTGTTGTTCCTCCCATGAATGATCTTCAGGGAAGACCTTCAGATCGGCCTTTACGGAAGGCCTTAGGTCGGCCATTA
GGCAAGGCCTTCAAGTCGGCCCTCGGGGGAGCTCTTCAGGTCGGCCCTCAGTGGAGCTCTTCAGGTCGACCCTTAGTGGAGCTCTTTAGGTCGACCCTCAGTGGA
GCTCTTTAG
Protein sequenceShow/hide protein sequence
MSTGSSLGGTSRGSPLFSRNVAQPPPEPPMQAEMIGRLLVLLPHVAARWGWWCVAVGAVVGEEARCVAGLRTRRRQRGLAASMVKKKKGKSVVDTTASVHVASDR
LWFSSFTAGDYGWVRMVNESISKVKGIGDICLKAGEGVELVLRGVRRESASREKTTVGTKVKSDVSRKATDMSRSAKSSGESSFRASGRQDHVALRSPGAITDRA
WVGPSSVDQLVDKASKYTKDVLTRFGMLSAKPCSTPIALSSAHTSSLCSDADAKNYRSLVGALHYLTFSRPNIAFAVSKLSQHLHSPTDEHLVAAKRVLRYLRGP
LNKLVNSSFINEENSLIFLRDYYRDVGAMLSAQALVVLWLTIYYFFASIVDLVYAKNMTGYDLVKVGHKESSTYSRYDLRENMTCFSGMTARRAWVSLERDDQLK
GSRSADWDELVVPPMNDLQGRPSDRPLRKALGRPLGKAFKSALGGALQVGPQWSSSGRPLVELFRSTLSGAL