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Moc03g17630 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g17630
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:11657848..11660534
RNA-Seq ExpressionMoc03g17630
SyntenyMoc03g17630
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143643.1 uncharacterized protein LOC111013504 [Momordica charantia]3.1e-2556.3Show/hide
Query:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL
        P     GEHQ+T +VEF VIDR+  YN ILGRP IH LKA+PSTYHQ++KY T + +AT+RGE  T  ECYAA +KGTA CA I  +EA  P      E 
Subjt:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL

Query:  SRGTPAEDLELVPLLGLDK
        +RGT  +++ELVPLL  DK
Subjt:  SRGTPAEDLELVPLLGLDK

XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]1.3e-2631.74Show/hide
Query:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIME------LEATTP-PHTDEAELSRGTPA
        + EF VIDR   YNAI GRP+IH+L+AVPST HQ LKY TP G+  VRGEQR S ECYA+ +KG + CA   +      LE+    P   + E    T  
Subjt:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIME------LEATTP-PHTDEAELSRGTPA

Query:  EDLELVPLL---------------------------------------GLD-------------------------------------------------
        E+LELVPLL                                       G+D                                                 
Subjt:  EDLELVPLL---------------------------------------GLD-------------------------------------------------

Query:  -----------------------KSKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEVQSAQPTWMDPI-----------------------
                               +S+NSNADAL +LA AYETDL R+VPVEIL   SI  P++MEV +  P+WMD I                       
Subjt:  -----------------------KSKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEVQSAQPTWMDPI-----------------------

Query:  -----KSKLFKRGYPLPLLRFLDPEEARYVIREI
                L+++G+ LPLL+ + PE+  Y+IREI
Subjt:  -----KSKLFKRGYPLPLLRFLDPEEARYVIREI

XP_022157402.1 uncharacterized protein LOC111024109 [Momordica charantia]1.3e-3466.95Show/hide
Query:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL
        P     G+ ++T+V EF VIDRS  YNAI+GRPLIH+L+AVPSTYHQVLKYPT AGIATVRGEQ+TS ECYA  MKGT TCAA+ +      P  DE E 
Subjt:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL

Query:  SRGTPAEDLELVPLLGLD
        +RGTPAE+LELVPLLGL+
Subjt:  SRGTPAEDLELVPLLGLD

XP_022158219.1 protein NYNRIN-like [Momordica charantia]7.8e-3739.55Show/hide
Query:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTD-EAELSR---GTPAEDL
        + EF VID    YNAI GRP+IH+ + VPST HQVLKY TP G+ TVRGEQ  S ECYA+ +KG++ CA  +E  A+     + +A+L R     P E+L
Subjt:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTD-EAELSR---GTPAEDL

Query:  ELVPLLGLDK------------------------------------------------SKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEV
        ELVPLL L+K                                                ++NSNADAL +LA AYETDL R+VPVEIL   SI  P++ME+
Subjt:  ELVPLLGLDK------------------------------------------------SKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEV

Query:  QSAQPTWMDPI----------------------------KSKLFKRGYPLPLLRFLDPEEARYVIREI
         + + +WMDPI                               L++RG+ LPLLR L PEE  YV+RE+
Subjt:  QSAQPTWMDPI----------------------------KSKLFKRGYPLPLLRFLDPEEARYVIREI

XP_022159205.1 uncharacterized protein LOC111025624 [Momordica charantia]1.2e-3265.55Show/hide
Query:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL
        P     G+ Q+T+V EF VIDRS  YNAI+GRPLI +L+AVPSTYHQVLKYPT AGIA VRGEQ+ S ECYAA MKGT TCAA+        P  DE + 
Subjt:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL

Query:  SRGTPAEDLELVPLLGLDK
        SRGTPAE+LELVPLLG +K
Subjt:  SRGTPAEDLELVPLLGLDK

TrEMBL top hitse value%identityAlignment
A0A6J1CR75 uncharacterized protein LOC1110135041.5e-2556.3Show/hide
Query:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL
        P     GEHQ+T +VEF VIDR+  YN ILGRP IH LKA+PSTYHQ++KY T + +AT+RGE  T  ECYAA +KGTA CA I  +EA  P      E 
Subjt:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL

Query:  SRGTPAEDLELVPLLGLDK
        +RGT  +++ELVPLL  DK
Subjt:  SRGTPAEDLELVPLLGLDK

A0A6J1D6M1 Ribonuclease H6.1e-2731.74Show/hide
Query:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIME------LEATTP-PHTDEAELSRGTPA
        + EF VIDR   YNAI GRP+IH+L+AVPST HQ LKY TP G+  VRGEQR S ECYA+ +KG + CA   +      LE+    P   + E    T  
Subjt:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIME------LEATTP-PHTDEAELSRGTPA

Query:  EDLELVPLL---------------------------------------GLD-------------------------------------------------
        E+LELVPLL                                       G+D                                                 
Subjt:  EDLELVPLL---------------------------------------GLD-------------------------------------------------

Query:  -----------------------KSKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEVQSAQPTWMDPI-----------------------
                               +S+NSNADAL +LA AYETDL R+VPVEIL   SI  P++MEV +  P+WMD I                       
Subjt:  -----------------------KSKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEVQSAQPTWMDPI-----------------------

Query:  -----KSKLFKRGYPLPLLRFLDPEEARYVIREI
                L+++G+ LPLL+ + PE+  Y+IREI
Subjt:  -----KSKLFKRGYPLPLLRFLDPEEARYVIREI

A0A6J1DUD8 uncharacterized protein LOC1110241096.1e-3566.95Show/hide
Query:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL
        P     G+ ++T+V EF VIDRS  YNAI+GRPLIH+L+AVPSTYHQVLKYPT AGIATVRGEQ+TS ECYA  MKGT TCAA+ +      P  DE E 
Subjt:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL

Query:  SRGTPAEDLELVPLLGLD
        +RGTPAE+LELVPLLGL+
Subjt:  SRGTPAEDLELVPLLGLD

A0A6J1DY08 uncharacterized protein LOC1110256245.7e-3365.55Show/hide
Query:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL
        P     G+ Q+T+V EF VIDRS  YNAI+GRPLI +L+AVPSTYHQVLKYPT AGIA VRGEQ+ S ECYAA MKGT TCAA+        P  DE + 
Subjt:  PCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTDEAEL

Query:  SRGTPAEDLELVPLLGLDK
        SRGTPAE+LELVPLLG +K
Subjt:  SRGTPAEDLELVPLLGLDK

A0A6J1DYS0 Ribonuclease H3.8e-3739.55Show/hide
Query:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTD-EAELSR---GTPAEDL
        + EF VID    YNAI GRP+IH+ + VPST HQVLKY TP G+ TVRGEQ  S ECYA+ +KG++ CA  +E  A+     + +A+L R     P E+L
Subjt:  VVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATCAAIMELEATTPPHTD-EAELSR---GTPAEDL

Query:  ELVPLLGLDK------------------------------------------------SKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEV
        ELVPLL L+K                                                ++NSNADAL +LA AYETDL R+VPVEIL   SI  P++ME+
Subjt:  ELVPLLGLDK------------------------------------------------SKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEV

Query:  QSAQPTWMDPI----------------------------KSKLFKRGYPLPLLRFLDPEEARYVIREI
         + + +WMDPI                               L++RG+ LPLLR L PEE  YV+RE+
Subjt:  QSAQPTWMDPI----------------------------KSKLFKRGYPLPLLRFLDPEEARYVIREI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGAAAGCACTTGAAGCACATCCCAACGCCCTTAGTTGGCTATGCAGGGGATTCAGTTGGTGCGGAAGGATGTATCTCGCTCCCTGTAACCATCGGCGAGGAGA
GCATCAGATGACCAGAGTTGTCGAGTTTTTTGTGATAGATCGAAGCTTGACATACAATGCTATACTTGGTCGGCCCCTGATTCACAACCTCAAGGCAGTTCCCTCCACTT
ACCACCAAGTTTTGAAGTATCCGACCCCGGCCGGGATCGCAACGGTCAGAGGTGAGCAAAGAACGTCCACAGAATGCTACGCAGCTACAATGAAAGGGACCGCCACTTGC
GCCGCGATCATGGAACTAGAAGCGACTACGCCACCACATACCGACGAGGCAGAGCTCAGCCGCGGCACTCCAGCAGAAGATCTGGAACTTGTCCCCTTGTTGGGGCTGGA
TAAGTCAAAAAACTCCAATGCTGATGCACTGACTCGCTTAGCATTGGCCTATGAGACCGACCTACCGAGAACGGTACCAGTTGAAATACTTGCTGAGTCATCCATCGACC
GACCTGAAATAATGGAGGTCCAGTCAGCTCAGCCCACGTGGATGGATCCAATCAAAAGCAAGCTCTTCAAGAGAGGATACCCTCTACCGTTGTTGCGGTTCCTCGATCCA
GAGGAGGCGAGGTATGTCATTCGCGAGATCACGAAGGAATCTGCGAAAACCACGGTGGAGCTCGATCTATGGCTGCAAAGGTCGTCCGCCAGGGTTACTATTGGTCGACG
ATTGACCGCGACACCAGGGAGTTCGCAAAGGCATGTCACAAGTGCCAGCGCTTCGCGAACATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGAAAGCACTTGAAGCACATCCCAACGCCCTTAGTTGGCTATGCAGGGGATTCAGTTGGTGCGGAAGGATGTATCTCGCTCCCTGTAACCATCGGCGAGGAGA
GCATCAGATGACCAGAGTTGTCGAGTTTTTTGTGATAGATCGAAGCTTGACATACAATGCTATACTTGGTCGGCCCCTGATTCACAACCTCAAGGCAGTTCCCTCCACTT
ACCACCAAGTTTTGAAGTATCCGACCCCGGCCGGGATCGCAACGGTCAGAGGTGAGCAAAGAACGTCCACAGAATGCTACGCAGCTACAATGAAAGGGACCGCCACTTGC
GCCGCGATCATGGAACTAGAAGCGACTACGCCACCACATACCGACGAGGCAGAGCTCAGCCGCGGCACTCCAGCAGAAGATCTGGAACTTGTCCCCTTGTTGGGGCTGGA
TAAGTCAAAAAACTCCAATGCTGATGCACTGACTCGCTTAGCATTGGCCTATGAGACCGACCTACCGAGAACGGTACCAGTTGAAATACTTGCTGAGTCATCCATCGACC
GACCTGAAATAATGGAGGTCCAGTCAGCTCAGCCCACGTGGATGGATCCAATCAAAAGCAAGCTCTTCAAGAGAGGATACCCTCTACCGTTGTTGCGGTTCCTCGATCCA
GAGGAGGCGAGGTATGTCATTCGCGAGATCACGAAGGAATCTGCGAAAACCACGGTGGAGCTCGATCTATGGCTGCAAAGGTCGTCCGCCAGGGTTACTATTGGTCGACG
ATTGACCGCGACACCAGGGAGTTCGCAAAGGCATGTCACAAGTGCCAGCGCTTCGCGAACATCTTGA
Protein sequenceShow/hide protein sequence
MGEKALEAHPNALSWLCRGFSWCGRMYLAPCNHRRGEHQMTRVVEFFVIDRSLTYNAILGRPLIHNLKAVPSTYHQVLKYPTPAGIATVRGEQRTSTECYAATMKGTATC
AAIMELEATTPPHTDEAELSRGTPAEDLELVPLLGLDKSKNSNADALTRLALAYETDLPRTVPVEILAESSIDRPEIMEVQSAQPTWMDPIKSKLFKRGYPLPLLRFLDP
EEARYVIREITKESAKTTVELDLWLQRSSARVTIGRRLTATPGSSQRHVTSASASRTS