; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g18340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g18340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:12131127..12132757
RNA-Seq ExpressionMoc03g18340
SyntenyMoc03g18340
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143574.1 uncharacterized protein LOC111013442 [Momordica charantia]1.7e-2944.58Show/hide
Query:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-----------------------------------------------------------KV
        + R LG + +++FSNSQL+V+QI+EEYQ KDSRM+KYLG                                                           KV
Subjt:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-----------------------------------------------------------KV

Query:  VRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        +RQG+YWP +  DAK+FV+ CDNCQ + NII+QP ELLT ISA WPFA+W VD+IGPFPLGKGQTK
Subjt:  VRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

XP_022154404.1 uncharacterized protein LOC111021681 [Momordica charantia]9.8e-2565.17Show/hide
Query:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        I+ +I E      S +     KVV+QG+YWP VD DAK+FVKACDNCQ FANII+QPPELLT ISA WPFA+W VD+IG FPLGKG+TK
Subjt:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

XP_022156778.1 uncharacterized protein LOC111023609 [Momordica charantia]1.3e-2465.17Show/hide
Query:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        I+ +I E      S       KVVRQG+YWP V+ D K+FVKACDNCQ FANII+QP +LLT ISALWPFA+W VD+IGPFPLGKGQTK
Subjt:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

XP_022156778.1 uncharacterized protein LOC111023609 [Momordica charantia]3.5e-0665.85Show/hide
Query:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLGKV
        + RGLG  H+++FS+SQLIVNQ++EEYQ KD+RM+KYL KV
Subjt:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLGKV

XP_022157626.1 uncharacterized protein LOC111024288 [Momordica charantia]1.8e-2634.92Show/hide
Query:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-------------------------------------------------------------
        M RGLG +HLQIFS+SQLIVNQI+EEY+ KDSRM+KYLG                                                             
Subjt:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------KVVRQGHYWPIVDLDA
                                                                                            KV+RQG+YWP VD DA
Subjt:  ------------------------------------------------------------------------------------KVVRQGHYWPIVDLDA

Query:  KEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        KEFVKACDNCQ FANII+QPPELLT IS  WPFA+W VDLIGPFPLGKGQTK
Subjt:  KEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

XP_022158485.1 uncharacterized protein LOC111024965 [Momordica charantia]7.5e-2560.22Show/hide
Query:  NSQLIVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        N   ++ ++ E+       +     K++RQG+YWP +D +AKEFVKACDNCQ FANII+QP ELLT ISA WPFAKW VDLI PFPLGKGQTK
Subjt:  NSQLIVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

TrEMBL top hitse value%identityAlignment
A0A6J1CPQ2 Ribonuclease H8.4e-3044.58Show/hide
Query:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-----------------------------------------------------------KV
        + R LG + +++FSNSQL+V+QI+EEYQ KDSRM+KYLG                                                           KV
Subjt:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-----------------------------------------------------------KV

Query:  VRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        +RQG+YWP +  DAK+FV+ CDNCQ + NII+QP ELLT ISA WPFA+W VD+IGPFPLGKGQTK
Subjt:  VRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

A0A6J1DM02 uncharacterized protein LOC1110216814.8e-2565.17Show/hide
Query:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        I+ +I E      S +     KVV+QG+YWP VD DAK+FVKACDNCQ FANII+QPPELLT ISA WPFA+W VD+IG FPLGKG+TK
Subjt:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

A0A6J1DVZ5 uncharacterized protein LOC1110249653.6e-2560.22Show/hide
Query:  NSQLIVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        N   ++ ++ E+       +     K++RQG+YWP +D +AKEFVKACDNCQ FANII+QP ELLT ISA WPFAKW VDLI PFPLGKGQTK
Subjt:  NSQLIVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

A0A6J1DWA1 Ribonuclease H6.2e-2565.17Show/hide
Query:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        I+ +I E      S       KVVRQG+YWP V+ DAK+FVK CDNCQ FA+II+QPPELLT ISA WPFA+W VD+IGPFPLGKGQTK
Subjt:  IVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

A0A6J1DWA1 Ribonuclease H1.3e-0365.71Show/hide
Query:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMD
        + +GLG TH+++FS+SQLIVNQI+EEYQ KD RM+
Subjt:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMD

A0A6J1DYR5 uncharacterized protein LOC1110242888.7e-2734.92Show/hide
Query:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-------------------------------------------------------------
        M RGLG +HLQIFS+SQLIVNQI+EEY+ KDSRM+KYLG                                                             
Subjt:  MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLG-------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------KVVRQGHYWPIVDLDA
                                                                                            KV+RQG+YWP VD DA
Subjt:  ------------------------------------------------------------------------------------KVVRQGHYWPIVDLDA

Query:  KEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK
        KEFVKACDNCQ FANII+QPPELLT IS  WPFA+W VDLIGPFPLGKGQTK
Subjt:  KEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTK

SwissProt top hitse value%identityAlignment
Q8K259 Gypsy retrotransposon integrase-like protein 11.5e-0438.33Show/hide
Query:  VVRQGHYWPIVDLDAKEFVKACDNCQFFAN-IIYQPPELLTLISALWPFAKWRVDLIGPF
        +V  G+YW  V  D K++V AC +CQ   N +I  P + L ++   W      VDL+GPF
Subjt:  VVRQGHYWPIVDLDAKEFVKACDNCQFFAN-IIYQPPELLTLISALWPFAKWRVDLIGPF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGAGGGCTAGGGGACACCCACCTACAAATTTTCAGCAATTCACAGTTGATAGTGAATCAGATCCAAGAAGAGTATCAGAGAAAAGACTCTCGGATGGATAAGTA
TTTGGGAAAGGTCGTTCGCCAAGGTCATTACTGGCCCATAGTTGATCTGGACGCAAAAGAATTTGTGAAGGCGTGTGACAACTGCCAATTCTTCGCGAACATCATCTATC
AGCCTCCAGAGCTGCTGACTCTGATCTCAGCTCTGTGGCCCTTTGCAAAATGGAGGGTGGACCTAATTGGGCCTTTCCCGTTAGGCAAAGGGCAGACCAAACCTCAAGAA
CCAGTACAAAAGAAAAGAATTAGAGATACAACAAGGAAAACTGGAAGAATTGGAGAAGGCCTCAGCTGCTTCCGAGGTGCGAACCAAGCTCGCCTTGGGATCCAAGAATA
TCTACCTCTTAGGAGTTCATCAACCCGACCTCCTGGGAAGAGTTCACGCCAGCAGTCTGATGAAGAGCTCCATCGGCTTCTTGGGAAGAAGGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGAGGGCTAGGGGACACCCACCTACAAATTTTCAGCAATTCACAGTTGATAGTGAATCAGATCCAAGAAGAGTATCAGAGAAAAGACTCTCGGATGGATAAGTA
TTTGGGAAAGGTCGTTCGCCAAGGTCATTACTGGCCCATAGTTGATCTGGACGCAAAAGAATTTGTGAAGGCGTGTGACAACTGCCAATTCTTCGCGAACATCATCTATC
AGCCTCCAGAGCTGCTGACTCTGATCTCAGCTCTGTGGCCCTTTGCAAAATGGAGGGTGGACCTAATTGGGCCTTTCCCGTTAGGCAAAGGGCAGACCAAACCTCAAGAA
CCAGTACAAAAGAAAAGAATTAGAGATACAACAAGGAAAACTGGAAGAATTGGAGAAGGCCTCAGCTGCTTCCGAGGTGCGAACCAAGCTCGCCTTGGGATCCAAGAATA
TCTACCTCTTAGGAGTTCATCAACCCGACCTCCTGGGAAGAGTTCACGCCAGCAGTCTGATGAAGAGCTCCATCGGCTTCTTGGGAAGAAGGGCTAG
Protein sequenceShow/hide protein sequence
MVRGLGDTHLQIFSNSQLIVNQIQEEYQRKDSRMDKYLGKVVRQGHYWPIVDLDAKEFVKACDNCQFFANIIYQPPELLTLISALWPFAKWRVDLIGPFPLGKGQTKPQE
PVQKKRIRDTTRKTGRIGEGLSCFRGANQARLGIQEYLPLRSSSTRPPGKSSRQQSDEELHRLLGKKG