; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g18480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g18480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr3:12205005..12209450
RNA-Seq ExpressionMoc03g18480
SyntenyMoc03g18480
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.1e-4662.99Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        H+RTEEANRLKDKL+SQ+LNSV ANLVESS  ++DR K +       + + ++  Q K TGG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        L E D  I+A +VEANL+ENK+DWILDTGASRHFC+NR+L HD++D+ADG+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.1e-4662.99Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        H+RTEEANRLKDKL+SQ+LNSV ANLVESS  ++DR K +       + + ++  Q K TGG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        L E D  I+A +VEANL+ENK+DWILDTGASRHFC+NR+L HD++D+ADG+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.1e-4662.99Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        H+RTEEANRLKDKL+SQ+LNSV ANLVESS  ++DR K +       + + ++  Q K TGG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        L E D  I+A +VEANL+ENK+DWILDTGASRHFC+NR+L HD++D+ADG+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]1.7e-5288.98Show/hide
Query:  FKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIVAVVVEANLVENKSDWILDTGASRHFCS
        FKNKGKTI RDRAQKNKGLQPKNTGGRIEKSKL+CYVC K  HKSYQCTQ+KDR DQRATPQANLTETDDII  VVVE NLVENKSDWILDTGASRHFCS
Subjt:  FKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIVAVVVEANLVENKSDWILDTGASRHFCS

Query:  NRDLFHDFQDSADGKAAF
        NRDLFHDFQDSADG+  F
Subjt:  NRDLFHDFQDSADGKAAF

XP_022156023.1 uncharacterized protein LOC111022991 [Momordica charantia]1.3e-6383.12Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        HV TEEANRLKDKLSSQSLNSVK NLVESSSASKDRFK KGK IARDRAQKNKGL+PKN GGR+EK KL+CYVC K GHKSYQCTQ+KDRKDQR  PQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        + ET +II  VVVEANLVENKS+WILDTGASRHFC NRDLFHDFQDSA+G+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

TrEMBL top hitse value%identityAlignment
A0A5D3C5T2 Ty1-copia retrotransposon protein2.0e-4662.99Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        H+RTEEANRLKDKL+SQ+LNSV ANLVESS  ++DR K +       + + ++  Q K TGG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        L E D  I+A +VEANL+ENK+DWILDTGASRHFC+NR+L HD++D+ADG+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

A0A5D3DJE2 Ty1-copia retrotransposon protein2.0e-4662.99Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        H+RTEEANRLKDKL+SQ+LNSV ANLVESS  ++DR K +       + + ++  Q K TGG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        L E D  I+A +VEANL+ENK+DWILDTGASRHFC+NR+L HD++D+ADG+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

A0A5D3DSQ3 Ty1-copia retrotransposon protein2.0e-4662.99Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        H+RTEEANRLKDKL+SQ+LNSV ANLVESS  ++DR K +       + + ++  Q K TGG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        L E D  I+A +VEANL+ENK+DWILDTGASRHFC+NR+L HD++D+ADG+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

A0A6J1DHJ4 uncharacterized protein LOC1110211478.3e-5388.98Show/hide
Query:  FKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIVAVVVEANLVENKSDWILDTGASRHFCS
        FKNKGKTI RDRAQKNKGLQPKNTGGRIEKSKL+CYVC K  HKSYQCTQ+KDR DQRATPQANLTETDDII  VVVE NLVENKSDWILDTGASRHFCS
Subjt:  FKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIVAVVVEANLVENKSDWILDTGASRHFCS

Query:  NRDLFHDFQDSADGKAAF
        NRDLFHDFQDSADG+  F
Subjt:  NRDLFHDFQDSADGKAAF

A0A6J1DPG7 uncharacterized protein LOC1110229916.1e-6483.12Show/hide
Query:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN
        HV TEEANRLKDKLSSQSLNSVK NLVESSSASKDRFK KGK IARDRAQKNKGL+PKN GGR+EK KL+CYVC K GHKSYQCTQ+KDRKDQR  PQAN
Subjt:  HVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQAN

Query:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF
        + ET +II  VVVEANLVENKS+WILDTGASRHFC NRDLFHDFQDSA+G+  F
Subjt:  LTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCATCGTTCAACAGTGTTGCCGGAGAGGCCACTAGGGAGGTGCAAGAGCTCGGGATGGTCCTACCGGACTTGTCAAAATTGGAACCACTCGACGGATCCAACTA
TCGCCGATGTCACGTGCGCACGGAGGAGGCCAACAGGCTAAAGGATAAGCTCTCTTCTCAATCCCTAAATTCAGTTAAGGCTAATTTAGTTGAATCTTCTAGTGCTTCCA
AAGACAGGTTCAAGAATAAAGGGAAGACAATTGCAAGGGATAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATACTGGTGGAAGAATCGAGAAATCCAAACTGATC
TGCTATGTCTGTGGAAAAGCCGGGCACAAATCCTATCAGTGCACTCAGAGGAAAGATAGGAAAGATCAAAGGGCTACTCCACAAGCCAACCTTACAGAGACGGATGACAT
CATTGTCGCTGTGGTTGTGGAAGCGAATCTAGTAGAGAACAAATCCGACTGGATTCTTGACACAGGAGCATCTAGACATTTCTGCTCGAACCGTGACCTCTTCCATGACT
TCCAGGACTCTGCCGACGGTAAGGCTGCCTTCTATGAAAGAGTAGAGTTGAGGAGTCTCTTTCTAGAGCTTTCACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCATCGTTCAACAGTGTTGCCGGAGAGGCCACTAGGGAGGTGCAAGAGCTCGGGATGGTCCTACCGGACTTGTCAAAATTGGAACCACTCGACGGATCCAACTA
TCGCCGATGTCACGTGCGCACGGAGGAGGCCAACAGGCTAAAGGATAAGCTCTCTTCTCAATCCCTAAATTCAGTTAAGGCTAATTTAGTTGAATCTTCTAGTGCTTCCA
AAGACAGGTTCAAGAATAAAGGGAAGACAATTGCAAGGGATAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATACTGGTGGAAGAATCGAGAAATCCAAACTGATC
TGCTATGTCTGTGGAAAAGCCGGGCACAAATCCTATCAGTGCACTCAGAGGAAAGATAGGAAAGATCAAAGGGCTACTCCACAAGCCAACCTTACAGAGACGGATGACAT
CATTGTCGCTGTGGTTGTGGAAGCGAATCTAGTAGAGAACAAATCCGACTGGATTCTTGACACAGGAGCATCTAGACATTTCTGCTCGAACCGTGACCTCTTCCATGACT
TCCAGGACTCTGCCGACGGTAAGGCTGCCTTCTATGAAAGAGTAGAGTTGAGGAGTCTCTTTCTAGAGCTTTCACGATGA
Protein sequenceShow/hide protein sequence
MLSSFNSVAGEATREVQELGMVLPDLSKLEPLDGSNYRRCHVRTEEANRLKDKLSSQSLNSVKANLVESSSASKDRFKNKGKTIARDRAQKNKGLQPKNTGGRIEKSKLI
CYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIVAVVVEANLVENKSDWILDTGASRHFCSNRDLFHDFQDSADGKAAFYERVELRSLFLELSR