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Moc03g18560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g18560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:12271148..12272317
RNA-Seq ExpressionMoc03g18560
SyntenyMoc03g18560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8387595.1 hypothetical protein HHK36_026248 [Tetracentron sinense]1.6e-1035.62Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGENHLDSALIAHSKGKEKMRYGKQKLKEDQKNED
        M++   +E++A+ LLSSL DSW+T+  TVSNS  +  L  S + ++   E+ RRK +G + A           AL+  ++G    R G  + K+D KN  
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGENHLDSALIAHSKGKEKMRYGKQKLKEDQKNED

Query:  TLNYVSPEVLACIEGNTTPI---DQSSEWVVDSAASVHVSSNRSWFTS--AENHGVFKGG
        T    S +V+    G    +   DQ  EWVVD+AAS H + N+ +FTS  A + G  K G
Subjt:  TLNYVSPEVLACIEGNTTPI---DQSSEWVVDSAASVHVSSNRSWFTS--AENHGVFKGG

KAG6639444.1 hypothetical protein CIPAW_10G100900 [Carya illinoinensis]1.3e-0932.87Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGK--NYASTSGGENHLDSALIAHSKGKEKMRYGKQKLKEDQKN
        +EI F +E++A+ LL+SL +SW+ ++  VSNS G   LK+ DI    + E++R+K SG+    +S    ++   S     ++G+ K +Y  +  +  +  
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGK--NYASTSGGENHLDSALIAHSKGKEKMRYGKQKLKEDQKN

Query:  EDTLNYVSPEVL-ACIEGNTTPIDQSSEWVVDSAASVHVSSNR
         D+ N V+ EV  A +    +P+D   +W++DS AS H SS+R
Subjt:  EDTLNYVSPEVL-ACIEGNTTPIDQSSEWVVDSAASVHVSSNR

RVW14266.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.3e-0931.28Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------
        M+ITF +E++A+ LLSSL +SW+T+  TVSNS  D  +  S +  + + E+ RRK SG +++            S S   ++ D +              
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------

Query:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS
           H KG  K    K K KE       ++K  DT      E++   +  +   I Q ++WV+DS AS HV+S   +FTS
Subjt:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS

RVW84195.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.3e-0931.28Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------
        M+ITF +E++A+ LLSSL +SW+T+  TVSNS  D  +  S +  + + E+ RRK SG +++            S S   ++ D +              
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------

Query:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS
           H KG  K    K K KE       ++K  DT      E++   +  +   I Q ++WV+DS AS HV+S   +FTS
Subjt:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS

RVW91307.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.2e-1135.33Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGEN--HLDSALIAHSKG--KEKMRYGKQKLKEDQ
        M+ITF +E++A+ LLSSL +SW+T+  TVSNS  D  +  S +  + + E+ RRK SG +++     EN     S   AH  G  K +++  +Q+   ++
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGEN--HLDSALIAHSKG--KEKMRYGKQKLKEDQ

Query:  KNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS
        K  DT      E++   +  +   I Q ++WV+DS AS HV+S   +FTS
Subjt:  KNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS

TrEMBL top hitse value%identityAlignment
A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0931.28Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------
        M+ITF +E++A+ LLSSL +SW+T+  TVSNS  D  +  S +  + + E+ RRK SG +++            S S   ++ D +              
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------

Query:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS
           H KG  K    K K KE       ++K  DT      E++   +  +   I Q ++WV+DS AS HV+S   +FTS
Subjt:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS

A0A438E7D0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0933.8Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGENHLDSALIAHSKGKEKMRYGKQKLKEDQKNE-
        +EI F +E++A+ +L+SL +SW+ ++  VSNS G + LK++DI    + E+IRR+ +G+   S SG   +L++    +++   +  + +Q     +KNE 
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGENHLDSALIAHSKGKEKMRYGKQKLKEDQKNE-

Query:  DTLNYVSPEVL-ACIEGNTTPIDQSSEWVVDSAASVHVSSNR
        D+ N V+ EV  A +    +P+D   +WV+DS AS H + +R
Subjt:  DTLNYVSPEVL-ACIEGNTTPIDQSSEWVVDSAASVHVSSNR

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0931.28Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------
        M+ITF +E++A+ LLSSL +SW+T+  TVSNS  D  +  S +  + + E+ RRK SG +++            S S   ++ D +              
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------

Query:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS
           H KG  K    K K KE       ++K  DT      E++   +  +   I Q ++WV+DS AS HV+S   +FTS
Subjt:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS

A0A438I3N7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-1135.33Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGEN--HLDSALIAHSKG--KEKMRYGKQKLKEDQ
        M+ITF +E++A+ LLSSL +SW+T+  TVSNS  D  +  S +  + + E+ RRK SG +++     EN     S   AH  G  K +++  +Q+   ++
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGEN--HLDSALIAHSKG--KEKMRYGKQKLKEDQ

Query:  KNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS
        K  DT      E++   +  +   I Q ++WV+DS AS HV+S   +FTS
Subjt:  KNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS

A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0931.28Show/hide
Query:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------
        M+ITF +E++A+ LLSSL +SW+T+  TVSNS  D  +  S +  + + E+ RRK SG +++            S S   ++ D +              
Subjt:  MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYA------------STSGGENHLDSA--------------

Query:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS
           H KG  K    K K KE       ++K  DT      E++   +  +   I Q ++WV+DS AS HV+S   +FTS
Subjt:  LIAHSKGKEKMRYGKQKLKE-------DQKNEDTLNYVSPEVLACIEG-NTTPIDQSSEWVVDSAASVHVSSNRSWFTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCACTTTCTCAGAGGAGGTAAAGGCTATAAAGCTGCTGTCTTCTTTGCATGATAGTTGGAAAACGATAAAGACGACGGTGTCGAATTCGTTAGGGGACAAGAG
TCTGAAATTTTCAGATATCTGTCATGCTGCAATTGTTGAGGACATTCGCAGGAAAGGAAGTGGAAAGAATTATGCATCCACTTCTGGTGGTGAGAACCATTTAGATTCAG
CATTGATAGCGCATAGTAAAGGCAAAGAGAAAATGAGATATGGGAAACAGAAGCTTAAAGAGGATCAGAAAAATGAGGACACTCTAAATTACGTGTCACCAGAGGTGTTA
GCTTGTATTGAAGGTAACACAACACCTATAGACCAGTCATCAGAGTGGGTAGTGGACAGTGCAGCTTCAGTACATGTATCTTCAAACAGAAGTTGGTTCACGTCCGCAGA
AAATCATGGCGTGTTCAAGGGAGGCTTGAAAGAACTAACAGCATTGACAGTCAAGAAATATCAGAAGAATCTGCCATCAATTCAAGTACAACAGTTAGGAAGTAGAGGAA
ATGGAGAGGGGAACCACTCAGTGAGGTGTTCAACAGACTGTCAGTTTCGAGCTCCAGTTGTCAGACGGATAAGTGAGCTGACAAAGTCGCATGGGCGAAAGGGTGCATTG
AGAAAGACTAGAATTGGTGCTGAGGTTGATGGTGGTGTCTCTAGAGTGGCAACGGAGTTAAGTGGAAGTGCCAAGTCATCAGATGGAAAATCTTTCTTCAGGAGTCGTTG
GGTGCGAGTCAACAAGGAAGCGTCGGGGATCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATCACTTTCTCAGAGGAGGTAAAGGCTATAAAGCTGCTGTCTTCTTTGCATGATAGTTGGAAAACGATAAAGACGACGGTGTCGAATTCGTTAGGGGACAAGAG
TCTGAAATTTTCAGATATCTGTCATGCTGCAATTGTTGAGGACATTCGCAGGAAAGGAAGTGGAAAGAATTATGCATCCACTTCTGGTGGTGAGAACCATTTAGATTCAG
CATTGATAGCGCATAGTAAAGGCAAAGAGAAAATGAGATATGGGAAACAGAAGCTTAAAGAGGATCAGAAAAATGAGGACACTCTAAATTACGTGTCACCAGAGGTGTTA
GCTTGTATTGAAGGTAACACAACACCTATAGACCAGTCATCAGAGTGGGTAGTGGACAGTGCAGCTTCAGTACATGTATCTTCAAACAGAAGTTGGTTCACGTCCGCAGA
AAATCATGGCGTGTTCAAGGGAGGCTTGAAAGAACTAACAGCATTGACAGTCAAGAAATATCAGAAGAATCTGCCATCAATTCAAGTACAACAGTTAGGAAGTAGAGGAA
ATGGAGAGGGGAACCACTCAGTGAGGTGTTCAACAGACTGTCAGTTTCGAGCTCCAGTTGTCAGACGGATAAGTGAGCTGACAAAGTCGCATGGGCGAAAGGGTGCATTG
AGAAAGACTAGAATTGGTGCTGAGGTTGATGGTGGTGTCTCTAGAGTGGCAACGGAGTTAAGTGGAAGTGCCAAGTCATCAGATGGAAAATCTTTCTTCAGGAGTCGTTG
GGTGCGAGTCAACAAGGAAGCGTCGGGGATCACTTAG
Protein sequenceShow/hide protein sequence
MEITFSEEVKAIKLLSSLHDSWKTIKTTVSNSLGDKSLKFSDICHAAIVEDIRRKGSGKNYASTSGGENHLDSALIAHSKGKEKMRYGKQKLKEDQKNEDTLNYVSPEVL
ACIEGNTTPIDQSSEWVVDSAASVHVSSNRSWFTSAENHGVFKGGLKELTALTVKKYQKNLPSIQVQQLGSRGNGEGNHSVRCSTDCQFRAPVVRRISELTKSHGRKGAL
RKTRIGAEVDGGVSRVATELSGSAKSSDGKSFFRSRWVRVNKEASGIT