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Moc03g18940 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g18940
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:12562827..12564112
RNA-Seq ExpressionMoc03g18940
SyntenyMoc03g18940
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON78322.1 Zinc knuckle CX2CX4HX4C [Parasponia andersonii]6.4e-1842.37Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPM
        IQN P SC+T  +A  LG  +  +E++D G++   LG F+RV V+ D+TKP RR I +++ D   E+   +QYE+L DFC  CG+M H  REC       
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPM

Query:  F--GSGQCPYGDWLWAST
        F   S +  YG+WL A+T
Subjt:  F--GSGQCPYGDWLWAST

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.9e-2647.46Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPMF
        I N+PF C++  MA +LG  LG VE+++   +  W G F+RV V+ID++KP RRGIKLK   G+++WCP++YE+L DFCY+CG + HS REC      + 
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPMF

Query:  GSGQCPYGDWLWASTRKK
         +    YGDWL A+  KK
Subjt:  GSGQCPYGDWLWASTRKK

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]5.8e-1928.86Show/hide
Query:  MEDLVDLWKDLALTGDENKDVCATDGCPLLTAKNVGHYAVGKWFSSGTVNVEAFKAVMKF----------------------------------------
        M+++ +LW++  LT ++ + +      PL+T +NV  YAVGK  +S  ++VEAF++VMK                                         
Subjt:  MEDLVDLWKDLALTGDENKDVCATDGCPLLTAKNVGHYAVGKWFSSGTVNVEAFKAVMKF----------------------------------------

Query:  ----------------------------IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQY
                                    I  +PF C+ + MA  LG  +G VE++DC  S  W G F+RV V+IDI+KPF+RG+K++    +E WCP++Y
Subjt:  ----------------------------IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQY

Query:  E
        E
Subjt:  E

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]6.8e-2051.65Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE
        I  + F C+T+ MA  LG  LG VE+VD  SS  W+  FL V V+I++ KP RRG+K+K   G+++WCP++YERL DFCY CG + HS+RE
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE

XP_041009301.1 uncharacterized protein LOC121253336 [Juglans microcarpa x Juglans regia]1.9e-1743.22Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDC-GSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPM
        I N+P   +T  +   LG  +G V +VD  GSS  W G FLR+ V+IDIT+P  RG  LKLD  ++VW P +YERL  FC+QCG ++H    C+     +
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDC-GSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPM

Query:  FGSGQCPYGDWLWASTRK
        +G   C +G WL A+  K
Subjt:  FGSGQCPYGDWLWASTRK

TrEMBL top hitse value%identityAlignment
A0A2P5DYF4 Zinc knuckle CX2CX4HX4C3.1e-1842.37Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPM
        IQN P SC+T  +A  LG  +  +E++D G++   LG F+RV V+ D+TKP RR I +++ D   E+   +QYE+L DFC  CG+M H  REC       
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPM

Query:  F--GSGQCPYGDWLWAST
        F   S +  YG+WL A+T
Subjt:  F--GSGQCPYGDWLWAST

A0A6J1D765 uncharacterized protein LOC1110179021.4e-2647.46Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPMF
        I N+PF C++  MA +LG  LG VE+++   +  W G F+RV V+ID++KP RRGIKLK   G+++WCP++YE+L DFCY+CG + HS REC      + 
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPMF

Query:  GSGQCPYGDWLWASTRKK
         +    YGDWL A+  KK
Subjt:  GSGQCPYGDWLWASTRKK

A0A6J1DP89 uncharacterized protein LOC1110229322.8e-1928.86Show/hide
Query:  MEDLVDLWKDLALTGDENKDVCATDGCPLLTAKNVGHYAVGKWFSSGTVNVEAFKAVMKF----------------------------------------
        M+++ +LW++  LT ++ + +      PL+T +NV  YAVGK  +S  ++VEAF++VMK                                         
Subjt:  MEDLVDLWKDLALTGDENKDVCATDGCPLLTAKNVGHYAVGKWFSSGTVNVEAFKAVMKF----------------------------------------

Query:  ----------------------------IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQY
                                    I  +PF C+ + MA  LG  +G VE++DC  S  W G F+RV V+IDI+KPF+RG+K++    +E WCP++Y
Subjt:  ----------------------------IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQY

Query:  E
        E
Subjt:  E

A0A6J1DVS4 uncharacterized protein LOC1110235553.3e-2051.65Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE
        I  + F C+T+ MA  LG  LG VE+VD  SS  W+  FL V V+I++ KP RRG+K+K   G+++WCP++YERL DFCY CG + HS+RE
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE

A0A6P6FRB5 uncharacterized protein LOC1124898222.6e-1740.34Show/hide
Query:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVR--IDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSP
        + NVP  C+T+ + M +G  LG +  VD        G ++RV VR  IDI KP RRG+ ++ D     W   QYERLL+FC+ CG++ HS ++CA  V+ 
Subjt:  IQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVR--IDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSP

Query:  MFGSGQCPYGDWLWASTRK
                YG WL AST +
Subjt:  MFGSGQCPYGDWLWASTRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding2.0e-0624.56Show/hide
Query:  AVGKWFSSGTVNVEAFKAVMKFIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDF
        A+ +W    T +   F  V   I+ +P   ++     ++  +LG V  +D     T    F+RV VR+D T+P R   +++  +        +YE+L   
Subjt:  AVGKWFSSGTVNVEAFKAVMKFIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDF

Query:  CYQCGLMRHSLREC
        C  C  + H +  C
Subjt:  CYQCGLMRHSLREC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTTCACCTTCTTCTTCGTGCCATCTCCTCCCTCCTTCTTAGCAATTCAATGTCGTCACAAACAGCCTCCTATAATACATAATGTTCTGATTGATTTTCTGGTCAT
GGAGGACTTGGTTGATCTATGGAAGGATTTAGCGCTAACGGGAGATGAGAATAAGGATGTGTGTGCGACTGACGGGTGTCCTTTACTGACAGCAAAGAATGTTGGTCATT
ATGCGGTGGGGAAATGGTTTTCTAGTGGTACTGTGAACGTTGAAGCCTTTAAGGCTGTCATGAAGTTTATTCAGAATGTCCCATTCTCTTGTCTGACGAGGGCGATGGCA
ATGATGTTGGGTGGCTCTCTGGGAATAGTCGAGGATGTTGACTGTGGCAGCTCTCGTACGTGGCTTGGGGGCTTTTTGCGGGTTTGGGTACGCATTGATATCACGAAGCC
TTTCCGTCGGGGTATTAAGCTCAAGCTTGACGCGGGGAGAGAAGTGTGGTGCCCCATCCAATATGAACGACTCCTGGATTTTTGTTACCAATGTGGTTTGATGAGGCATT
CGCTTCGCGAATGTGCTATTCCTGTTTCCCCGATGTTTGGGTCCGGACAGTGTCCATACGGTGATTGGTTATGGGCTTCGACTAGGAAGAAAGTGCCTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTTCACCTTCTTCTTCGTGCCATCTCCTCCCTCCTTCTTAGCAATTCAATGTCGTCACAAACAGCCTCCTATAATACATAATGTTCTGATTGATTTTCTGGTCAT
GGAGGACTTGGTTGATCTATGGAAGGATTTAGCGCTAACGGGAGATGAGAATAAGGATGTGTGTGCGACTGACGGGTGTCCTTTACTGACAGCAAAGAATGTTGGTCATT
ATGCGGTGGGGAAATGGTTTTCTAGTGGTACTGTGAACGTTGAAGCCTTTAAGGCTGTCATGAAGTTTATTCAGAATGTCCCATTCTCTTGTCTGACGAGGGCGATGGCA
ATGATGTTGGGTGGCTCTCTGGGAATAGTCGAGGATGTTGACTGTGGCAGCTCTCGTACGTGGCTTGGGGGCTTTTTGCGGGTTTGGGTACGCATTGATATCACGAAGCC
TTTCCGTCGGGGTATTAAGCTCAAGCTTGACGCGGGGAGAGAAGTGTGGTGCCCCATCCAATATGAACGACTCCTGGATTTTTGTTACCAATGTGGTTTGATGAGGCATT
CGCTTCGCGAATGTGCTATTCCTGTTTCCCCGATGTTTGGGTCCGGACAGTGTCCATACGGTGATTGGTTATGGGCTTCGACTAGGAAGAAAGTGCCTCCATGA
Protein sequenceShow/hide protein sequence
MYFTFFFVPSPPSFLAIQCRHKQPPIIHNVLIDFLVMEDLVDLWKDLALTGDENKDVCATDGCPLLTAKNVGHYAVGKWFSSGTVNVEAFKAVMKFIQNVPFSCLTRAMA
MMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRRGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRECAIPVSPMFGSGQCPYGDWLWASTRKKVPP