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Moc03g19370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g19370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr3:13042989..13045843
RNA-Seq ExpressionMoc03g19370
SyntenyMoc03g19370
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-2148.84Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA +RGDQLV+Q V ++K N F W         + L P   K RTF+ELATR HD+E+SI +RG  D  
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
                N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

KAA0051229.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-2249.61Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA++RGDQLV+Q V ++K N F W +         L P   K RTF+ELATR HD+E+SI +RG  DL 
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
                N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

KAA0054170.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-2053.51Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNW----------------SVHPRHALRSSLHPSRDKTRTFKELATRT
        M  GYQP KFQ FD KGNPKQHI HFVET ENA +RGDQLV+Q V ++K N F W                +VH RHAL         K  TF+ELAT T
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNW----------------SVHPRHALRSSLHPSRDKTRTFKELATRT

Query:  HDIEISIGSRGFCD
        HD+E+SI SRG  D
Subjt:  HDIEISIGSRGFCD

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-2249.61Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA +RGDQLV+Q V ++K N F W         + L P   K RTF+ELATR HD+E+SI +RG  D  
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
              G N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-2249.61Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA +RGDQLV+Q V ++K N F W         + L P   K RTF+ELATR HD+E+SI +RG  D  
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
              G N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein2.0e-2148.84Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA +RGDQLV+Q V ++K N F W         + L P   K RTF+ELATR HD+E+SI +RG  D  
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
                N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

A0A5A7UCG4 Ty3-gypsy retrotransposon protein1.4e-2249.61Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA++RGDQLV+Q V ++K N F W +         L P   K RTF+ELATR HD+E+SI +RG  DL 
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
                N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

A0A5A7UFZ3 Ty3-gypsy retrotransposon protein1.3e-2053.51Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNW----------------SVHPRHALRSSLHPSRDKTRTFKELATRT
        M  GYQP KFQ FD KGNPKQHI HFVET ENA +RGDQLV+Q V ++K N F W                +VH RHAL         K  TF+ELAT T
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNW----------------SVHPRHALRSSLHPSRDKTRTFKELATRT

Query:  HDIEISIGSRGFCD
        HD+E+SI SRG  D
Subjt:  HDIEISIGSRGFCD

A0A5A7UI09 Retrotransposon gag protein3.9e-2249.61Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA +RGDQLV+Q V ++K N F W         + L P   K RTF+ELATR HD+E+SI +RG  D  
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
              G N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

A0A5D3CCI8 Retrotransposon gag protein3.9e-2249.61Show/hide
Query:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS
        M  GYQP KFQ FD KGNPKQHIAHFVET ENA +RGDQLV+Q V ++K N F W         + L P   K RTF+ELATR HD+E+SI +RG  D  
Subjt:  MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLS

Query:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR
              G N ++ TK +A+ V+  + +++
Subjt:  AWSCLIGCNLLS-TKVVAHPVIVSNPIIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTGGATACCAACCTTCAAAGTTCCAGCATTTCGACGAGAAAGGCAATCCCAAGCAACATATTGCTCACTTCGTCGAAACTTATGAGAATGCCGATACG
AGAGGCGATCAACTGGTCAAGCAATCCGTCTGGACGATGAAGGAAAACACCTTTAACTGGAGTGTGCACCCAAGGCATGCACTAAGGTCTTCTTTACATCCTTCA
AGGGATAAAACCCGAACCTTTAAAGAACTTGCAACTCGCACTCATGACATTGAGATAAGTATTGGTAGTAGAGGCTTCTGCGACCTTTCAGCCTGGTCATGTCTG
ATCGGCTGCAATCTCTTGTCAACTAAGGTTGTCGCACATCCTGTTATTGTCTCAAATCCTATTATTCGAGCCTGCTTAGATGGAAAGATATATTATGGTTCATTC
CTTCGACTTTCTCGTTCAATGCAGCTAATTTGCTCCCTTGCTATTTTTGGCCTGCGATTGGTTGCTCTCTCTATCCAGGAAATTGTCTATTCATTTCACCTAGGA
CCTACTCTAGAACTTGTCGACTTACTTCACCCTAGACCTCCTCAGATGTTGAATCAAAGGGTCAGTGGCCAAGTTCGAGCCTACCTTCGCAAGGTTGTCAGAGGG
GCTTCATTGAAATTCTCGGTCAGTGGCTGCGATCTGGATCGACTGAAGTTTGCTGAGTCGAGACCTCGCAAGATTCTGAACCTAGTCATGACCTGGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTGGATACCAACCTTCAAAGTTCCAGCATTTCGACGAGAAAGGCAATCCCAAGCAACATATTGCTCACTTCGTCGAAACTTATGAGAATGCCGATACG
AGAGGCGATCAACTGGTCAAGCAATCCGTCTGGACGATGAAGGAAAACACCTTTAACTGGAGTGTGCACCCAAGGCATGCACTAAGGTCTTCTTTACATCCTTCA
AGGGATAAAACCCGAACCTTTAAAGAACTTGCAACTCGCACTCATGACATTGAGATAAGTATTGGTAGTAGAGGCTTCTGCGACCTTTCAGCCTGGTCATGTCTG
ATCGGCTGCAATCTCTTGTCAACTAAGGTTGTCGCACATCCTGTTATTGTCTCAAATCCTATTATTCGAGCCTGCTTAGATGGAAAGATATATTATGGTTCATTC
CTTCGACTTTCTCGTTCAATGCAGCTAATTTGCTCCCTTGCTATTTTTGGCCTGCGATTGGTTGCTCTCTCTATCCAGGAAATTGTCTATTCATTTCACCTAGGA
CCTACTCTAGAACTTGTCGACTTACTTCACCCTAGACCTCCTCAGATGTTGAATCAAAGGGTCAGTGGCCAAGTTCGAGCCTACCTTCGCAAGGTTGTCAGAGGG
GCTTCATTGAAATTCTCGGTCAGTGGCTGCGATCTGGATCGACTGAAGTTTGCTGAGTCGAGACCTCGCAAGATTCTGAACCTAGTCATGACCTGGATCTAG
Protein sequenceShow/hide protein sequence
MSAGYQPSKFQHFDEKGNPKQHIAHFVETYENADTRGDQLVKQSVWTMKENTFNWSVHPRHALRSSLHPSRDKTRTFKELATRTHDIEISIGSRGFCDLSAWSCL
IGCNLLSTKVVAHPVIVSNPIIRACLDGKIYYGSFLRLSRSMQLICSLAIFGLRLVALSIQEIVYSFHLGPTLELVDLLHPRPPQMLNQRVSGQVRAYLRKVVRG
ASLKFSVSGCDLDRLKFAESRPRKILNLVMTWI