; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g19450 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g19450
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:13072232..13073289
RNA-Seq ExpressionMoc03g19450
SyntenyMoc03g19450
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.1e-8770.08Show/hide
Query:  KQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSS--------------EGSRWE
        ++RT ESLHDYV RFNKEKLQVEGLTD+VSLLAF+  VRDEHLSF   K                    E+F    E +               +GSRWE
Subjt:  KQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSS--------------EGSRWE

Query:  KRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGES
        KRDRS Q+DPP+KFEKYT TTVPLEQVLMEIK+QRLLKWPERM A STKRSKGRYC FH DHGHATQDCFDLKEEVEGLI RGYLKEYVE+ K TQNGES
Subjt:  KRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGES

Query:  DKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        DKSPAREIRTIMG PIERESGRKRK D+REARA+REQNEVYH Y T+R VTI+F
Subjt:  DKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

XP_022150104.1 uncharacterized protein LOC111018365 [Momordica charantia]2.2e-6760.87Show/hide
Query:  QRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSSE--------------GSRWEK
        QRT ESLH+YVARFN+EKLQVEGLTD+VSLLAFMS VRDEHLSF  RK+                   E+F    EP  +               SRWEK
Subjt:  QRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSSE--------------GSRWEK

Query:  RDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESD
        RDRSSQ+DPP+KFEKYTPTTVPLEQ                                  DHGHATQDCFDLKEEV+GLIR GYLKEYVED K TQNGESD
Subjt:  RDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESD

Query:  KSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        KSPAREIRTI+G  IERESGRK KAD+ EARANR+QNEVYHA ITDRLVTI+F
Subjt:  KSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]5.5e-14379.65Show/hide
Query:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF
        VKQFD TTDPV+HLDAYREWMDIYGVSEAVRCR FSTTLN SARIWFRQLKRGSISSFKSLA+AFVTQFVGGRCRSRPVAYLLTIKQRT ESL DYVARF
Subjt:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF

Query:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFV--RKENT---------------EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFE
        N+EKLQVEGLTD+VSLLAFMS VRDEHLSF    R  NT               E+F    EP                +GSRWEKRDRSSQ+DPPRKFE
Subjt:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFV--RKENT---------------EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFE

Query:  KYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCP
        KYTPTTVP+EQVLMEIKDQRLLKWPERMKA S KRSKGRYC FHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVE+ K TQNGESDKSPAREIRTIMG P
Subjt:  KYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCP

Query:  IERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        IERESGRKRKAD+REAR +REQNEVYHAY T+R VTI+F
Subjt:  IERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]5.4e-6668.84Show/hide
Query:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF
        VK FDG T+PV+HLDAYREWMDIYGVS+A+RCR FSTTLN SARIWFRQLKRGSISSFKSLA+AF+TQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF
Subjt:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF

Query:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKEN-----------------TEYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKF
        N+EKLQ+EGLTD+VSLLAFMS VRDEHLSF   K                   +E+     EP                +GSRWEKRDR SQ+DPPRKF
Subjt:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKEN-----------------TEYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKF

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]4.3e-11175.17Show/hide
Query:  LKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT------------
        +KRGSISSFKSLA+AFVTQFVGGRCRSRPVAYLLTIKQRT ESLHDYVARFNKEKLQ+E LTD VSLLAFMS VRDEHLSF   K+              
Subjt:  LKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT------------

Query:  -----EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGH
             E+F    EP                +GSRWEKRDRSSQ+DPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMK  STKRSKGRYC FHRDH H
Subjt:  -----EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGH

Query:  ATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        ATQD FDLKEEVEGLIRRGYL+EYVE+ K TQNGES+KSPAREIRTIMG PIERES RKRKAD+REAR +REQNEVYHAY T+R VTI+F
Subjt:  ATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128055.5e-8870.08Show/hide
Query:  KQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSS--------------EGSRWE
        ++RT ESLHDYV RFNKEKLQVEGLTD+VSLLAF+  VRDEHLSF   K                    E+F    E +               +GSRWE
Subjt:  KQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSS--------------EGSRWE

Query:  KRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGES
        KRDRS Q+DPP+KFEKYT TTVPLEQVLMEIK+QRLLKWPERM A STKRSKGRYC FH DHGHATQDCFDLKEEVEGLI RGYLKEYVE+ K TQNGES
Subjt:  KRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGES

Query:  DKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        DKSPAREIRTIMG PIERESGRKRK D+REARA+REQNEVYH Y T+R VTI+F
Subjt:  DKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

A0A6J1D911 uncharacterized protein LOC1110183651.1e-6760.87Show/hide
Query:  QRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSSE--------------GSRWEK
        QRT ESLH+YVARFN+EKLQVEGLTD+VSLLAFMS VRDEHLSF  RK+                   E+F    EP  +               SRWEK
Subjt:  QRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT-----------------EYFLGGAEPSSE--------------GSRWEK

Query:  RDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESD
        RDRSSQ+DPP+KFEKYTPTTVPLEQ                                  DHGHATQDCFDLKEEV+GLIR GYLKEYVED K TQNGESD
Subjt:  RDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESD

Query:  KSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        KSPAREIRTI+G  IERESGRK KAD+ EARANR+QNEVYHA ITDRLVTI+F
Subjt:  KSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

A0A6J1DWY0 uncharacterized protein LOC1110252932.7e-14379.65Show/hide
Query:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF
        VKQFD TTDPV+HLDAYREWMDIYGVSEAVRCR FSTTLN SARIWFRQLKRGSISSFKSLA+AFVTQFVGGRCRSRPVAYLLTIKQRT ESL DYVARF
Subjt:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF

Query:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFV--RKENT---------------EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFE
        N+EKLQVEGLTD+VSLLAFMS VRDEHLSF    R  NT               E+F    EP                +GSRWEKRDRSSQ+DPPRKFE
Subjt:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFV--RKENT---------------EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFE

Query:  KYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCP
        KYTPTTVP+EQVLMEIKDQRLLKWPERMKA S KRSKGRYC FHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVE+ K TQNGESDKSPAREIRTIMG P
Subjt:  KYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCP

Query:  IERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        IERESGRKRKAD+REAR +REQNEVYHAY T+R VTI+F
Subjt:  IERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

A0A6J1DYL6 uncharacterized protein LOC1110257852.1e-11175.17Show/hide
Query:  LKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT------------
        +KRGSISSFKSLA+AFVTQFVGGRCRSRPVAYLLTIKQRT ESLHDYVARFNKEKLQ+E LTD VSLLAFMS VRDEHLSF   K+              
Subjt:  LKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKENT------------

Query:  -----EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGH
             E+F    EP                +GSRWEKRDRSSQ+DPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMK  STKRSKGRYC FHRDH H
Subjt:  -----EYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGH

Query:  ATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF
        ATQD FDLKEEVEGLIRRGYL+EYVE+ K TQNGES+KSPAREIRTIMG PIERES RKRKAD+REAR +REQNEVYHAY T+R VTI+F
Subjt:  ATQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKF

A0A6J1E1E7 uncharacterized protein LOC1110255482.6e-6668.84Show/hide
Query:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF
        VK FDG T+PV+HLDAYREWMDIYGVS+A+RCR FSTTLN SARIWFRQLKRGSISSFKSLA+AF+TQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF
Subjt:  VKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARF

Query:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKEN-----------------TEYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKF
        N+EKLQ+EGLTD+VSLLAFMS VRDEHLSF   K                   +E+     EP                +GSRWEKRDR SQ+DPPRKF
Subjt:  NKEKLQVEGLTDSVSLLAFMSSVRDEHLSFFVRKEN-----------------TEYFLGGAEPSS--------------EGSRWEKRDRSSQQDPPRKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAACAATTCGACGGGACGACCGACCCAGTGAACCATCTAGATGCTTATCGGGAATGGATGGATATCTACGGAGTGTCGGAGGCGGTCAGGTGCCGGGGATTCTC
GACTACATTAAACGAGTCAGCCAGAATATGGTTCCGACAATTAAAACGAGGGTCAATCTCGAGTTTCAAGAGCCTGGCAAAAGCATTCGTAACACAGTTTGTAGGGGGAC
GGTGTCGGAGCCGACCCGTGGCTTATCTTTTAACTATTAAACAGAGGACGGCAGAGAGTCTACACGACTATGTAGCTCGGTTCAACAAGGAAAAGCTGCAGGTAGAAGGC
CTTACAGACTCTGTATCTCTGCTGGCCTTCATGTCCAGCGTCAGGGATGAGCATTTGTCGTTTTTCGTTCGGAAAGAAAACACTGAGTACTTTCTCGGAGGCGCTGAGCC
GAGCTCAGAGGGGTCGAGATGGGAGAAGAGAGATCGGAGTAGCCAGCAAGATCCACCCCGAAAATTTGAAAAGTATACCCCGACCACCGTTCCACTCGAGCAAGTGCTGA
TGGAGATCAAAGACCAAAGGTTGCTTAAGTGGCCGGAGAGGATGAAAGCCTTGTCAACTAAACGAAGTAAAGGCCGATATTGCTTTTTCCACCGAGATCACGGCCATGCA
ACTCAGGATTGTTTTGATCTCAAAGAAGAGGTGGAAGGGCTAATCCGAAGGGGCTACCTCAAAGAGTATGTAGAGGACTTTAAAACGACACAAAACGGGGAAAGCGACAA
GTCCCCTGCTCGAGAGATTCGAACTATAATGGGATGCCCCATAGAGAGAGAATCTGGGAGAAAAAGAAAGGCAGATATGCGAGAAGCTAGGGCGAACCGTGAACAAAATG
AGGTCTACCACGCATATATTACAGACCGGCTGGTGACGATCAAGTTTTTCAGAGGACAAGGCGACTCACCTTCTCCACCCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAACAATTCGACGGGACGACCGACCCAGTGAACCATCTAGATGCTTATCGGGAATGGATGGATATCTACGGAGTGTCGGAGGCGGTCAGGTGCCGGGGATTCTC
GACTACATTAAACGAGTCAGCCAGAATATGGTTCCGACAATTAAAACGAGGGTCAATCTCGAGTTTCAAGAGCCTGGCAAAAGCATTCGTAACACAGTTTGTAGGGGGAC
GGTGTCGGAGCCGACCCGTGGCTTATCTTTTAACTATTAAACAGAGGACGGCAGAGAGTCTACACGACTATGTAGCTCGGTTCAACAAGGAAAAGCTGCAGGTAGAAGGC
CTTACAGACTCTGTATCTCTGCTGGCCTTCATGTCCAGCGTCAGGGATGAGCATTTGTCGTTTTTCGTTCGGAAAGAAAACACTGAGTACTTTCTCGGAGGCGCTGAGCC
GAGCTCAGAGGGGTCGAGATGGGAGAAGAGAGATCGGAGTAGCCAGCAAGATCCACCCCGAAAATTTGAAAAGTATACCCCGACCACCGTTCCACTCGAGCAAGTGCTGA
TGGAGATCAAAGACCAAAGGTTGCTTAAGTGGCCGGAGAGGATGAAAGCCTTGTCAACTAAACGAAGTAAAGGCCGATATTGCTTTTTCCACCGAGATCACGGCCATGCA
ACTCAGGATTGTTTTGATCTCAAAGAAGAGGTGGAAGGGCTAATCCGAAGGGGCTACCTCAAAGAGTATGTAGAGGACTTTAAAACGACACAAAACGGGGAAAGCGACAA
GTCCCCTGCTCGAGAGATTCGAACTATAATGGGATGCCCCATAGAGAGAGAATCTGGGAGAAAAAGAAAGGCAGATATGCGAGAAGCTAGGGCGAACCGTGAACAAAATG
AGGTCTACCACGCATATATTACAGACCGGCTGGTGACGATCAAGTTTTTCAGAGGACAAGGCGACTCACCTTCTCCACCCTCATAA
Protein sequenceShow/hide protein sequence
MVKQFDGTTDPVNHLDAYREWMDIYGVSEAVRCRGFSTTLNESARIWFRQLKRGSISSFKSLAKAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNKEKLQVEG
LTDSVSLLAFMSSVRDEHLSFFVRKENTEYFLGGAEPSSEGSRWEKRDRSSQQDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKALSTKRSKGRYCFFHRDHGHA
TQDCFDLKEEVEGLIRRGYLKEYVEDFKTTQNGESDKSPAREIRTIMGCPIERESGRKRKADMREARANREQNEVYHAYITDRLVTIKFFRGQGDSPSPPS