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Moc03g20230 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g20230
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:13657786..13658109
RNA-Seq ExpressionMoc03g20230
SyntenyMoc03g20230
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.9e-1650.56Show/hide
Query:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV
        I   G+KIS VKLND+ FLLW+ Q+LTAL+ + LE F++  +E P  ++ S + S  S+T  PN  +  WKRQD+LI+SWLLGSM+E++
Subjt:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]4.5e-1746.15Show/hide
Query:  SERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQS--GDESSSTLIPNQEFLNWKRQDKLITSWLLGSM
        S  +S L V N   SI   G+KIS VKL+D+NFLLW+ Q+LTAL+ + LE F +   E P  ++ S     +S+T  PN E+  WKR ++LI+ WLLGSM
Subjt:  SERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQS--GDESSSTLIPNQEFLNWKRQDKLITSWLLGSM

Query:  TEDV
        +E++
Subjt:  TEDV

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.9e-1650.56Show/hide
Query:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV
        I   G+KIS VKLND+ FLLW+ Q+LTAL+ + LE F++  +E P  ++ S + S  S+T  PN  +  WKRQD+LI+SWLLGSM+E++
Subjt:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]4.4e-2048.62Show/hide
Query:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDE--SSSTLIPNQEFLNWKRQDKLITSW
        M   SS RNS+     +    +NPG K+S V+LND+N LLW+ Q+ TAL+G+GLE +ID N + P  FVQ+ ++  SSS+L  N  +  W +QDKLI++W
Subjt:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDE--SSSTLIPNQEFLNWKRQDKLITSW

Query:  LLGSMTEDV
        LLGSM ED+
Subjt:  LLGSMTEDV

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]2.8e-3571.96Show/hide
Query:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLL
        M +SSSE +S   V N+N +IVNPG+KIST+KLNDENFLLWRLQ+ TAL+GHGL KFIDP A+IP  FVQS DESSS   PN EF+NWKRQDKLITSWLL
Subjt:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLL

Query:  GSMTEDV
        GSM+E++
Subjt:  GSMTEDV

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1650.56Show/hide
Query:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV
        I   G+KIS VKLND+ FLLW+ Q+LTAL+ + LE F++  +E P  ++ S + S  S+T  PN  +  WKRQD+LI+SWLLGSM+E++
Subjt:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV

A0A5A7UB21 Keratin, type II cytoskeletal 1-like2.2e-1746.15Show/hide
Query:  SERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQS--GDESSSTLIPNQEFLNWKRQDKLITSWLLGSM
        S  +S L V N   SI   G+KIS VKL+D+NFLLW+ Q+LTAL+ + LE F +   E P  ++ S     +S+T  PN E+  WKR ++LI+ WLLGSM
Subjt:  SERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQS--GDESSSTLIPNQEFLNWKRQDKLITSWLLGSM

Query:  TEDV
        +E++
Subjt:  TEDV

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1650.56Show/hide
Query:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV
        I   G+KIS VKLND+ FLLW+ Q+LTAL+ + LE F++  +E P  ++ S + S  S+T  PN  +  WKRQD+LI+SWLLGSM+E++
Subjt:  IVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDES--SSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV

A0A6J1DLT9 uncharacterized protein LOC1110217572.1e-2048.62Show/hide
Query:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDE--SSSTLIPNQEFLNWKRQDKLITSW
        M   SS RNS+     +    +NPG K+S V+LND+N LLW+ Q+ TAL+G+GLE +ID N + P  FVQ+ ++  SSS+L  N  +  W +QDKLI++W
Subjt:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDE--SSSTLIPNQEFLNWKRQDKLITSW

Query:  LLGSMTEDV
        LLGSM ED+
Subjt:  LLGSMTEDV

A0A6J1E314 uncharacterized protein LOC1110255721.4e-3571.96Show/hide
Query:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLL
        M +SSSE +S   V N+N +IVNPG+KIST+KLNDENFLLWRLQ+ TAL+GHGL KFIDP A+IP  FVQS DESSS   PN EF+NWKRQDKLITSWLL
Subjt:  MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLL

Query:  GSMTEDV
        GSM+E++
Subjt:  GSMTEDV

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.4e-0735.35Show/hide
Query:  NSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV
        ++E  V N N SI+N  +  +  KL   N+L+W  QV     G+ L  F+D +  +PPA +  G +++  +  N ++  WKRQDKLI S +LG+++  V
Subjt:  NSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.4e-0732.99Show/hide
Query:  ELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV
        E+ + N N   VN     +  KL   N+L+W  QV     G+ L  F+D +  +PPA +  G ++   +  N ++  W+RQDKLI S +LG+++  V
Subjt:  ELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTTCATCCTCAGAGAGAAATTCAGAATTATTTGTAACAAACAAGAATTACTCAATAGTGAATCCTGGCGATAAGATTTCAACGGTGAAATTGAATGACGAAAA
TTTTTTGCTGTGGAGGTTACAAGTTCTCACAGCGCTCAAAGGGCACGGTTTAGAAAAATTCATCGATCCAAATGCTGAAATTCCACCAGCCTTTGTACAATCTGGAGATG
AATCATCGTCAACCTTAATTCCTAATCAGGAATTTCTCAATTGGAAAAGGCAAGACAAACTAATCACTTCATGGCTTCTTGGATCTATGACTGAAGACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTTTCATCCTCAGAGAGAAATTCAGAATTATTTGTAACAAACAAGAATTACTCAATAGTGAATCCTGGCGATAAGATTTCAACGGTGAAATTGAATGACGAAAA
TTTTTTGCTGTGGAGGTTACAAGTTCTCACAGCGCTCAAAGGGCACGGTTTAGAAAAATTCATCGATCCAAATGCTGAAATTCCACCAGCCTTTGTACAATCTGGAGATG
AATCATCGTCAACCTTAATTCCTAATCAGGAATTTCTCAATTGGAAAAGGCAAGACAAACTAATCACTTCATGGCTTCTTGGATCTATGACTGAAGACGTTTGA
Protein sequenceShow/hide protein sequence
MVVSSSERNSELFVTNKNYSIVNPGDKISTVKLNDENFLLWRLQVLTALKGHGLEKFIDPNAEIPPAFVQSGDESSSTLIPNQEFLNWKRQDKLITSWLLGSMTEDV