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Moc03g20250 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g20250
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:13658743..13659171
RNA-Seq ExpressionMoc03g20250
SyntenyMoc03g20250
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-3056.59Show/hide
Query:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL
        N  +H Q   M+A + + DLN D+NWYPDSGA+NH+T+    LS+G+EY GGN+++  NG GL + H GS    S++  F   SF L NLL VP I KNL
Subjt:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL

Query:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG
        ISVSQFAKDN VFFEFHP  C+VKDL TG
Subjt:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG

KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.8e-2760.75Show/hide
Query:  DTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFAKDNDVFFEFHPFDCF
        D+NWYPDSGA+NH+T+    LS G+EY GGN+++  NG GL + H GS    S++  F   SF LKNLLHVP I KNLISVS FAKDN VFFEFHP  C+
Subjt:  DTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFAKDNDVFFEFHPFDCF

Query:  VKDLQTG
        VKDL  G
Subjt:  VKDLQTG

RVX12456.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]1.9e-2653.28Show/hide
Query:  MNAFMISPDLNKDTN---WYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFA
        M A ++   +N D +   W+ DSGA+NH TNDF  L++GT+Y   NK ++GNG GLD+LH G S   + S   SS+  +L+NLLHVP I KNLIS+SQFA
Subjt:  MNAFMISPDLNKDTN---WYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFA

Query:  KDNDVFFEFHPFDCFVKDLQTG
        ++N V+FEFHP  CFVKDL+ G
Subjt:  KDNDVFFEFHPFDCFVKDLQTG

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-3056.59Show/hide
Query:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL
        N  +H Q   M+A + + DLN D+NWYPDSGA+NH+T+    LS+G+EY GGN+++  NG GL + H GS    S++  F   SF L NLL VP I KNL
Subjt:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL

Query:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG
        ISVSQFAKDN VFFEFHP  C+VKDL TG
Subjt:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG

XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]5.1e-3260.83Show/hide
Query:  MNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNS-FLLKNLLHVPPIIKNLISVSQFAKD
        M A M++ D N+D  WYPDSGA+NHVTNDFG  SLG++Y G  K+ +GNG  L + H GS+ L+S S   SS   F L+NLLHVP I KNLIS+S FAKD
Subjt:  MNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNS-FLLKNLLHVPPIIKNLISVSQFAKD

Query:  NDVFFEFHPFDCFVKDLQTG
        N VFFEFHP + FVKDL TG
Subjt:  NDVFFEFHPFDCFVKDLQTG

TrEMBL top hitse value%identityAlignment
A0A438JU20 Retrovirus-related Pol polyprotein from transposon RE29.0e-2753.28Show/hide
Query:  MNAFMISPDLNKDTN---WYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFA
        M A ++   +N D +   W+ DSGA+NH TNDF  L++GT+Y   NK ++GNG GLD+LH G S   + S   SS+  +L+NLLHVP I KNLIS+SQFA
Subjt:  MNAFMISPDLNKDTN---WYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFA

Query:  KDNDVFFEFHPFDCFVKDLQTG
        ++N V+FEFHP  CFVKDL+ G
Subjt:  KDNDVFFEFHPFDCFVKDLQTG

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-3056.59Show/hide
Query:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL
        N  +H Q   M+A + + DLN D+NWYPDSGA+NH+T+    LS+G+EY GGN+++  NG GL + H GS    S++  F   SF L NLL VP I KNL
Subjt:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL

Query:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG
        ISVSQFAKDN VFFEFHP  C+VKDL TG
Subjt:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-3056.59Show/hide
Query:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL
        N  +H Q   M+A + + DLN D+NWYPDSGA+NH+T+    LS+G+EY GGN+++  NG GL + H GS    S++  F   SF L NLL VP I KNL
Subjt:  NFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNL

Query:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG
        ISVSQFAKDN VFFEFHP  C+VKDL TG
Subjt:  ISVSQFAKDNDVFFEFHPFDCFVKDLQTG

A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-2760.75Show/hide
Query:  DTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFAKDNDVFFEFHPFDCF
        D+NWYPDSGA+NH+T+    LS G+EY GGN+++  NG GL + H GS    S++  F   SF LKNLLHVP I KNLISVS FAKDN VFFEFHP  C+
Subjt:  DTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLHVPPIIKNLISVSQFAKDNDVFFEFHPFDCF

Query:  VKDLQTG
        VKDL  G
Subjt:  VKDLQTG

A0A6J1DSS1 uncharacterized protein LOC1110235862.5e-3260.83Show/hide
Query:  MNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNS-FLLKNLLHVPPIIKNLISVSQFAKD
        M A M++ D N+D  WYPDSGA+NHVTNDFG  SLG++Y G  K+ +GNG  L + H GS+ L+S S   SS   F L+NLLHVP I KNLIS+S FAKD
Subjt:  MNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNS-FLLKNLLHVPPIIKNLISVSQFAKD

Query:  NDVFFEFHPFDCFVKDLQTG
        N VFFEFHP + FVKDL TG
Subjt:  NDVFFEFHPFDCFVKDLQTG

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-1539.57Show/hide
Query:  QQSAPFVPGQNFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNL
        Q  +PF P Q           N  + SP      NW  DSGA++H+T+DF  LSL   Y GG+ V + +G  + + HTGS+ L +      S    L N+
Subjt:  QQSAPFVPGQNFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNL

Query:  LHVPPIIKNLISVSQFAKDNDVFFEFHPFDCFVKDLQTG
        L+VP I KNLISV +    N V  EF P    VKDL TG
Subjt:  LHVPPIIKNLISVSQFAKDNDVFFEFHPFDCFVKDLQTG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.6e-1540.85Show/hide
Query:  NPQQS-APFVPGQNFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLL
        N QQS +PF P Q   +    +  NA           NW  DSGA++H+T+DF  LS    Y GG+ V I +G  + + HTGS+ L +     SS S  L
Subjt:  NPQQS-APFVPGQNFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLL

Query:  KNLLHVPPIIKNLISVSQFAKDNDVFFEFHPFDCFVKDLQTG
          +L+VP I KNLISV +    N V  EF P    VKDL TG
Subjt:  KNLLHVPPIIKNLISVSQFAKDNDVFFEFHPFDCFVKDLQTG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTCAACAGAGCGCACCATTTGTTCCAGGACAGAACTTTCAACATCATCATCAACCAGCCACGATGAATGCCTTTATGATCTCTCCAGACTTGAACAAA
GATACCAATTGGTATCCCGATTCTGGTGCCTCAAATCATGTTACAAATGATTTTGGTTACCTGTCCTTGGGAACTGAATATCTTGGTGGAAACAAAGTCCATATT
GGTAATGGTATGGGATTAGATGTTCTTCATACTGGCTCATCTTACCTTAAATCCACTTCACCTCATTTTTCCTCTAACTCTTTCCTACTTAAAAATCTTCTTCAT
GTTCCTCCTATTATCAAAAATCTAATCAGTGTTAGTCAATTTGCTAAGGATAATGATGTTTTCTTTGAATTTCACCCATTTGATTGTTTTGTGAAGGATCTCCAA
ACTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTCAACAGAGCGCACCATTTGTTCCAGGACAGAACTTTCAACATCATCATCAACCAGCCACGATGAATGCCTTTATGATCTCTCCAGACTTGAACAAA
GATACCAATTGGTATCCCGATTCTGGTGCCTCAAATCATGTTACAAATGATTTTGGTTACCTGTCCTTGGGAACTGAATATCTTGGTGGAAACAAAGTCCATATT
GGTAATGGTATGGGATTAGATGTTCTTCATACTGGCTCATCTTACCTTAAATCCACTTCACCTCATTTTTCCTCTAACTCTTTCCTACTTAAAAATCTTCTTCAT
GTTCCTCCTATTATCAAAAATCTAATCAGTGTTAGTCAATTTGCTAAGGATAATGATGTTTTCTTTGAATTTCACCCATTTGATTGTTTTGTGAAGGATCTCCAA
ACTGGATAA
Protein sequenceShow/hide protein sequence
MNPQQSAPFVPGQNFQHHHQPATMNAFMISPDLNKDTNWYPDSGASNHVTNDFGYLSLGTEYLGGNKVHIGNGMGLDVLHTGSSYLKSTSPHFSSNSFLLKNLLH
VPPIIKNLISVSQFAKDNDVFFEFHPFDCFVKDLQTG