CuGenDBv2

Gene ID	Moc03g20460
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Genome location	chr3:13807203..13810074
RNA-Seq Expression	Moc03g20460
Synteny	Moc03g20460
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051973.1 E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]

7.4e-25

49.64

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Query:  KIIVITSKKSITTLCFKDVKIFCWISPATKKKITWRWMTIDGNFKGGRIGTKMHHFKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVA
        KI+ + SKK  TTL    V +   IS  T  K  W     D   +G +     H +KMKI LPT+ GK + + FL+WV + ENFF+YM+TP+ KKV LV 
Subjt:  KIIVITSKKSITTLCFKDVKIFCWISPATKKKITWRWMTIDGNFKGGRIGTKMHHFKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVA

Query:  FKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
         KL+ G  AWWDQLE+NRQRYGK PIR WE MK+L++
Subjt:  FKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

KAA0061454.1 reverse transcriptase [Cucumis melo var. makuwa]

2.1e-27

62.11

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Query:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        +KG     ++HH +KMKI LPT+ GK +IE FL+W+ N+ENFF+YM+TP+ KK+ LVA KL GG  AWWDQLE+NRQRYGK PIRSWE MK L++
Subjt:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

TYK11204.1 reverse transcriptase [Cucumis melo var. makuwa]

4.3e-25

58.95

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Query:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        ++G     ++HH +KMKI LPT+ GK ++E FL+W+ N ENFF+YM+T + KKV LVA KL+GG  AWWDQ+E+NRQRYGK PI SWE MK+LM+
Subjt:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]

4.3e-25

70.73

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Query:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        FKMKI LPTF GKM++E FL+ V NVENFF Y NTPEDKKV+LVAFK++ G  AWWDQLE+N +R GK+PIRSW  M RLMR
Subjt:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]

4.3e-25

70.73

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Query:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        FKMKI LPTF GKM++E FL+ V NVENFF Y NTPEDKKV+LVAFK++ G  AWWDQLE+N +R GK+PIRSW  M RLMR
Subjt:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X4

3.6e-25

49.64

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Query:  KIIVITSKKSITTLCFKDVKIFCWISPATKKKITWRWMTIDGNFKGGRIGTKMHHFKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVA
        KI+ + SKK  TTL    V +   IS  T  K  W     D   +G +     H +KMKI LPT+ GK + + FL+WV + ENFF+YM+TP+ KKV LV 
Subjt:  KIIVITSKKSITTLCFKDVKIFCWISPATKKKITWRWMTIDGNFKGGRIGTKMHHFKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVA

Query:  FKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
         KL+ G  AWWDQLE+NRQRYGK PIR WE MK+L++
Subjt:  FKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

A0A5D3CH16 Reverse transcriptase

1.0e-27

62.11

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Query:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        +KG     ++HH +KMKI LPT+ GK +IE FL+W+ N+ENFF+YM+TP+ KK+ LVA KL GG  AWWDQLE+NRQRYGK PIRSWE MK L++
Subjt:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

A0A5D3CJ99 Reverse transcriptase

2.1e-25

58.95

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Query:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        ++G     ++HH +KMKI LPT+ GK ++E FL+W+ N ENFF+YM+T + KKV LVA KL+GG  AWWDQ+E+NRQRYGK PI SWE MK+LM+
Subjt:  FKGGRIGTKMHH-FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X1

2.1e-25

70.73

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Query:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        FKMKI LPTF GKM++E FL+ V NVENFF Y NTPEDKKV+LVAFK++ G  AWWDQLE+N +R GK+PIRSW  M RLMR
Subjt:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X2

2.1e-25

70.73

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Query:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        FKMKI LPTF GKM++E FL+ V NVENFF Y NTPEDKKV+LVAFK++ G  AWWDQLE+N +R GK+PIRSW  M RLMR
Subjt:  FKMKICLPTFGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G40129.1 unknown protein

6.9e-05

31.82

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Query:  EGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        E +LEW  N++ +FSY N   + +       L G  + WW Q   +R  Y + PI  W  +K  +R
Subjt:  EGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

AT4G07350.1 unknown protein

1.8e-05

34.25

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Query:  FGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR
        F GK   E +LEW  N++ +FSY N   + +       L G  + WW Q   +R  Y + PI  W  +K L+R
Subjt:  FGGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMR

Sequences

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CDS sequence

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ATGAACGGTGTATTCTCATGTGAAGGAGCCGTCTTTGTGGGAGCTGAGATCCAAAAGGGAGTTAGAGTAGGGCCCTTTAACAAGATATCTTCACCAAAAGAAGCTCGTGA
TCCCTTTATGGCTTTGTCCCATCAAGTTCAAGTAACCAGTAAAGAAAGTCATCCAAGTACAGTTTGTGTCAAGGAACGCTCCTTGCCATGGATTATCCCTGATACTAGTC
CAAAGGATAATGCTCGTTTTAGAAACATGTCATTTAAAGGCTGTGAGATTAAGCAAATACTGGAGATTATACATCAGCAATTGAAAACGCTGAATACAAATCAGAGTCCA
ACAAGGAATACTCAACCTCTGCCCCCAAGAATCAACCAAGATGGTATTCGCATTGCATTCAAGAAAGACCTGCAGAACCTCCAAGATTCCATCAAGAAAGAGGGCAAGAT
TACAATAGGGGTCCAAGATTGTGTCAAGATTATCGTCATCACCTCCAAGAAGTCAATCACAACCCTTTGTTTCAAAGACGTCAAGATCTTTTGTTGGATTTCTCCAGCGA
CGAAGAAGAAGATTACTTGGAGATGGATGACAATCGACGGTAATTTCAAAGGAGGCCGAATAGGCACCAAGATGCACCATTTCAAAATGAAAATTTGCCTACCTACCTTC
GGCGGCAAAATGGAAATTGAGGGGTTCTTGGAGTGGGTTTGGAATGTGGAAAATTTTTTCTCATACATGAACACACCGGAAGATAAAAAGGTACGCCTCGTTGCTTTTAA
ACTTAAAGGTGGTGTCTTTGCTTGGTGGGATCAATTAGAGGTCAATCGTCAAAGGTATGGTAAGCGGCCTATTCGGAGTTGGGAACTTATGAAAAGACTAATGAGATTTG
GATTAAGAAGTTAA

mRNA sequence

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Protein sequence

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MNGVFSCEGAVFVGAEIQKGVRVGPFNKISSPKEARDPFMALSHQVQVTSKESHPSTVCVKERSLPWIIPDTSPKDNARFRNMSFKGCEIKQILEIIHQQLKTLNTNQSP
TRNTQPLPPRINQDGIRIAFKKDLQNLQDSIKKEGKITIGVQDCVKIIVITSKKSITTLCFKDVKIFCWISPATKKKITWRWMTIDGNFKGGRIGTKMHHFKMKICLPTF
GGKMEIEGFLEWVWNVENFFSYMNTPEDKKVRLVAFKLKGGVFAWWDQLEVNRQRYGKRPIRSWELMKRLMRFGLRS

Moc03g20460 (gene) of Bitter gourd (OHB3-1) v2 genome