; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g20540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g20540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPMD domain-containing protein
Genome locationchr3:13954824..13962691
RNA-Seq ExpressionMoc03g20540
SyntenyMoc03g20540
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025448.1 hypothetical protein E6C27_scaffold417G00440 [Cucumis melo var. makuwa]1.1e-1639.06Show/hide
Query:  MHYVYGWLARYFNTHYKTPMELPDPQMIEFSVKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIV
        M+YV+GWLA YF THY  P E+  P+M  FS +         +P + VT R++ WW+ +H  YFE     LVS  +  P   +LPKN+  + GGK + +V
Subjt:  MHYVYGWLARYFNTHYKTPMELPDPQMIEFSVKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIV

Query:  EDKASAPAEVASESPEESQDSNDEQHWK
        E  A    E   E  +ES  S  ++HWK
Subjt:  EDKASAPAEVASESPEESQDSNDEQHWK

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]5.6e-2625.69Show/hide
Query:  CLSMHYVYGWLARYFNTHYKTPMELPDPQMIEFS---------------------------------------------------------------VKA
        C  +HYV+GWLA YFNTHYK    L  P M+EFS                                                               +  
Subjt:  CLSMHYVYGWLARYFNTHYKTPMELPDPQMIEFS---------------------------------------------------------------VKA

Query:  IFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRG-GKSLHIVEDKASAPAEV-----------------------
        ++LPA TL P   +TS YK+WW  KHGDY ++ +  L+  D P+P  +K    K+ +    K +   + K    A+                        
Subjt:  IFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRG-GKSLHIVEDKASAPAEV-----------------------

Query:  ASESPEESQDSNDEQHWKGIG---------------------------SIVEGDHVPTKKVV-------------------HVDVLKFFNICVDAAISDV
         S   E+S  SND++HWK                              S  E    P    +                    +   +  + C D  ISD+
Subjt:  ASESPEESQDSNDEQHWKGIG---------------------------SIVEGDHVPTKKVV-------------------HVDVLKFFNICVDAAISDV

Query:  QRQVASAMWAILHKNIIHTSIDKASSLEPEVRKIFHVVSGTYVVNLTSLKDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHA
        +++ A  +W  L + II T  ++ SSLEPE+RKIF  ++ +   NLT LK+ + GYFQ    ++ ++   SS L  ++KD QL E K  ++ +  D+   
Subjt:  QRQVASAMWAILHKNIIHTSIDKASSLEPEVRKIFHVVSGTYVVNLTSLKDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHA

Query:  LEERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS
        LEE   +Q++ A++  +E KLEAKL   + + +++S
Subjt:  LEERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS

XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]7.5e-2365.52Show/hide
Query:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG
        MQSNRSTLILIILYTHDSS S V HLPL+TLAI PSLELALYALVKYSSQLNDLQLLHGNHS  A              VP  I            RILG
Subjt:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG

Query:  SDESSLALVAPDCYDC
        S+ESSL LV  D YDC
Subjt:  SDESSLALVAPDCYDC

XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]7.0e-3778.26Show/hide
Query:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG
        MQSN STLILIILYTHDSS SC++HLPL+TLAI PSLELA+YALVKYSSQLNDLQLL GNHS LAGRTT DKVV + LRV ELI+  E+IGI  + RILG
Subjt:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG

Query:  SDESSLALVAPDCYD
        SD SSLALVA D YD
Subjt:  SDESSLALVAPDCYD

XP_031739998.1 uncharacterized protein LOC116403342 [Cucumis sativus]1.4e-1624.82Show/hide
Query:  EFSVKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDR------------------------GGKSL-------
        E ++  ++LP    +P   VTS YK WW  KHGDY ++ +  L+  D P+PP +K    K+ +                         G K L       
Subjt:  EFSVKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDR------------------------GGKSL-------

Query:  ----HIV---------EDKASAPAEVASESPEESQDSNDEQHWK--------------------------------------------------------
            H++         +++ S   +  S+  E+SQ SND++HWK                                                        
Subjt:  ----HIV---------EDKASAPAEVASESPEESQDSNDEQHWK--------------------------------------------------------

Query:  -------GIGS--------IVEGDHVPTKKVVHVDVLKFFNICVDAAISDVQRQVASAMWAILHKNIIHTSIDKASSLEPEVRKIFHVVSGTYVVNLTSL
                IG+        +++G     +    + V +  + C D+ ISD++RQ A  +W  L + II T  ++ SSLEPE+ KIF  ++     NL  L
Subjt:  -------GIGS--------IVEGDHVPTKKVVHVDVLKFFNICVDAAISDVQRQVASAMWAILHKNIIHTSIDKASSLEPEVRKIFHVVSGTYVVNLTSL

Query:  KDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHALEERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS----KQDEHLDQK
        ++ + GYFQ     +N   + SS L  ++KD QL E K  ++ +  DE   L E +  ++   ++  +E KLEAKL + +A+ ++ S    K D  L  K
Subjt:  KDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHALEERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS----KQDEHLDQK

Query:  KVEASKVREKM
        + E SK  E++
Subjt:  KVEASKVREKM

TrEMBL top hitse value%identityAlignment
A0A5A7U4C3 Uncharacterized protein2.7e-2625.69Show/hide
Query:  CLSMHYVYGWLARYFNTHYKTPMELPDPQMIEFS---------------------------------------------------------------VKA
        C  +HYV+GWLA YFNTHYK    L  P M+EFS                                                               +  
Subjt:  CLSMHYVYGWLARYFNTHYKTPMELPDPQMIEFS---------------------------------------------------------------VKA

Query:  IFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRG-GKSLHIVEDKASAPAEV-----------------------
        ++LPA TL P   +TS YK+WW  KHGDY ++ +  L+  D P+P  +K    K+ +    K +   + K    A+                        
Subjt:  IFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRG-GKSLHIVEDKASAPAEV-----------------------

Query:  ASESPEESQDSNDEQHWKGIG---------------------------SIVEGDHVPTKKVV-------------------HVDVLKFFNICVDAAISDV
         S   E+S  SND++HWK                              S  E    P    +                    +   +  + C D  ISD+
Subjt:  ASESPEESQDSNDEQHWKGIG---------------------------SIVEGDHVPTKKVV-------------------HVDVLKFFNICVDAAISDV

Query:  QRQVASAMWAILHKNIIHTSIDKASSLEPEVRKIFHVVSGTYVVNLTSLKDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHA
        +++ A  +W  L + II T  ++ SSLEPE+RKIF  ++ +   NLT LK+ + GYFQ    ++ ++   SS L  ++KD QL E K  ++ +  D+   
Subjt:  QRQVASAMWAILHKNIIHTSIDKASSLEPEVRKIFHVVSGTYVVNLTSLKDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHA

Query:  LEERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS
        LEE   +Q++ A++  +E KLEAKL   + + +++S
Subjt:  LEERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS

A0A5D3C0F3 Uncharacterized protein5.1e-1739.06Show/hide
Query:  MHYVYGWLARYFNTHYKTPMELPDPQMIEFSVKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIV
        M+YV+GWLA YF THY  P E+  P+M  FS +         +P + VT R++ WW+ +H  YFE     LVS  +  P   +LPKN+  + GGK + +V
Subjt:  MHYVYGWLARYFNTHYKTPMELPDPQMIEFSVKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIV

Query:  EDKASAPAEVASESPEESQDSNDEQHWK
        E  A    E   E  +ES  S  ++HWK
Subjt:  EDKASAPAEVASESPEESQDSNDEQHWK

A0A5D3C267 Putative mitochondrial protein1.5e-1625.07Show/hide
Query:  MHYVYGWLARYFNTHYKTPMELPDPQMIEFS--------------------------VKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSG
        MHYV+GWLA YF+THY  P E+  P+M  FS                          +  ++LPA +L+P + VT ++  WW+ +H  YFE     LVS 
Subjt:  MHYVYGWLARYFNTHYKTPMELPDPQMIEFS--------------------------VKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSG

Query:  DLPSPPPLKLPKNKEGDRGGKSLHIVEDKASAPAEVASESPEESQDSNDEQHWKG--IGSIVEGDH-----VPTKKVVHVDVLKFFNICVDAAISDVQRQ
         +P P   +L KN+  + GGK + +VE  A    E   +  +ES  S   +HWK     + V GDH     +   +V  V  L   N  ++  +  V  +
Subjt:  DLPSPPPLKLPKNKEGDRGGKSLHIVEDKASAPAEVASESPEESQDSNDEQHWKG--IGSIVEGDH-----VPTKKVVHVDVLKFFNICVDAAISDVQRQ

Query:  VASAMWAILHKNIIHTSIDKASSLEPEVRKIFH--VVSGTYVVNLTSLKDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHAL
          + + A      + +  ++  + +  V K+    +     +  +   K  +G           L++L   +L  T K  QL E   ++++ L   +   
Subjt:  VASAMWAILHKNIIHTSIDKASSLEPEVRKIFH--VVSGTYVVNLTSLKDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHAL

Query:  EERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS----KQDEHLDQKKVEASKV
         +   +Q++ A++  E ++LE +L    AK  ++S    ++ E +DQ++++ +K+
Subjt:  EERDKLQQQHAQILQEEEKLEAKLIVAQAKRSEVS----KQDEHLDQKKVEASKV

A0A6J1CQG9 (-)-germacrene D synthase-like3.7e-2365.52Show/hide
Query:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG
        MQSNRSTLILIILYTHDSS S V HLPL+TLAI PSLELALYALVKYSSQLNDLQLLHGNHS  A              VP  I            RILG
Subjt:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG

Query:  SDESSLALVAPDCYDC
        S+ESSL LV  D YDC
Subjt:  SDESSLALVAPDCYDC

A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein3.4e-3778.26Show/hide
Query:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG
        MQSN STLILIILYTHDSS SC++HLPL+TLAI PSLELA+YALVKYSSQLNDLQLL GNHS LAGRTT DKVV + LRV ELI+  E+IGI  + RILG
Subjt:  MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILG

Query:  SDESSLALVAPDCYD
        SD SSLALVA D YD
Subjt:  SDESSLALVAPDCYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCAATAGGTCAACATTGATTTTGATAATCTTGTACACTCATGATTCTAGTGTTTCATGTGTTTACCATCTTCCTTTGGAAACTTTAGCCATCCCGCCT
TCATTAGAACTTGCACTATATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCACGGTAATCACAGCGTACTTGCGGGTCGTACCACTTTG
GATAAGGTGGTTGTAATGGTTCTACGAGTACCAGAGCTAATAAATGACTTTGAAATGATTGGGATAATAGCTCGGTATAGGATATTGGGATCGGATGAAAGCTCT
CTCGCTTTAGTTGCCCCCGACTGCTATGATTGTCTGATCAAGAGCTCCTCATCAAAAGGTTCCATGGAAGATTTTATTACTCCCTCAAGAACTTGGGATGTCCTT
AAACTACAGGAGTTTGTTTATGAGGATTATGTAACAGAGATTTTGCATATCCCTATTAGCAGTTCAGATGTGAACTTTAATTCAAGGGCTTGTGAACTTGTTCTT
GAATCAATGGTCGATGACTTCAACTTCTTTCTTGTCGAAGGATCTTTGAAGTCTTTGGATGAATCTAAATGCTCCGAATCCTCTGAATATCCAATCTTCTGGACA
TTTTCGAATGTCCCAAATGAGAGTCCCTTGTGTTATTCTTGTGATCGTGCTCTTGCTTGTCTCTCCATGCATTACGTTTACGGTTGGTTGGCTCGTTATTTCAAC
ACTCATTATAAAACTCCTATGGAGCTTCCGGATCCTCAAATGATTGAGTTTTCTGTGAAGGCGATATTTCTTCCGGCTCATACGCTAGATCCTCATGAACAAGTT
ACTTCTCGTTACAAAAGCTGGTGGTCAATTAAGCATGGAGACTACTTTGAGAAATGTATAGTGAAGTTAGTGAGTGGTGATCTTCCTTCCCCACCACCACTTAAA
TTACCCAAGAACAAGGAGGGTGATAGAGGAGGCAAAAGTCTTCATATAGTTGAGGATAAGGCATCTGCTCCTGCAGAAGTTGCTTCGGAATCTCCTGAAGAGAGC
CAAGATAGTAATGATGAGCAACATTGGAAGGGAATCGGCAGCATAGTTGAGGGTGATCATGTACCAACCAAAAAGGTGGTGCATGTTGATGTCCTTAAATTCTTC
AACATATGTGTTGATGCTGCAATTTCTGACGTTCAACGACAAGTTGCTTCAGCTATGTGGGCCATTCTACATAAGAATATTATACACACTTCAATTGATAAGGCT
TCATCTCTCGAACCAGAAGTGCGTAAAATTTTTCATGTTGTTTCAGGGACGTATGTAGTTAATCTTACTTCTCTCAAAGATTTTATAGGTGGCTATTTTCAGAAG
GCCGCAACTTACGATAACCTACAATCCTTAGTTTCTTCTCGGCTGACTTTGACAAGTAAGGATTGCCAACTAGAGGAGTACAAACTTAGTTTGGAGAAGATATTA
TGTGACGAGCAACATGCACTTGAGGAGAGAGACAAGCTTCAACAACAACATGCACAAATATTGCAAGAAGAAGAGAAGTTGGAAGCCAAACTTATAGTTGCTCAG
GCTAAACGAAGCGAGGTTTCCAAGCAAGATGAGCACCTAGACCAGAAAAAGGTTGAAGCTTCTAAAGTACGGGAGAAAATGGGTGACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCAATAGGTCAACATTGATTTTGATAATCTTGTACACTCATGATTCTAGTGTTTCATGTGTTTACCATCTTCCTTTGGAAACTTTAGCCATCCCGCCT
TCATTAGAACTTGCACTATATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCACGGTAATCACAGCGTACTTGCGGGTCGTACCACTTTG
GATAAGGTGGTTGTAATGGTTCTACGAGTACCAGAGCTAATAAATGACTTTGAAATGATTGGGATAATAGCTCGGTATAGGATATTGGGATCGGATGAAAGCTCT
CTCGCTTTAGTTGCCCCCGACTGCTATGATTGTCTGATCAAGAGCTCCTCATCAAAAGGTTCCATGGAAGATTTTATTACTCCCTCAAGAACTTGGGATGTCCTT
AAACTACAGGAGTTTGTTTATGAGGATTATGTAACAGAGATTTTGCATATCCCTATTAGCAGTTCAGATGTGAACTTTAATTCAAGGGCTTGTGAACTTGTTCTT
GAATCAATGGTCGATGACTTCAACTTCTTTCTTGTCGAAGGATCTTTGAAGTCTTTGGATGAATCTAAATGCTCCGAATCCTCTGAATATCCAATCTTCTGGACA
TTTTCGAATGTCCCAAATGAGAGTCCCTTGTGTTATTCTTGTGATCGTGCTCTTGCTTGTCTCTCCATGCATTACGTTTACGGTTGGTTGGCTCGTTATTTCAAC
ACTCATTATAAAACTCCTATGGAGCTTCCGGATCCTCAAATGATTGAGTTTTCTGTGAAGGCGATATTTCTTCCGGCTCATACGCTAGATCCTCATGAACAAGTT
ACTTCTCGTTACAAAAGCTGGTGGTCAATTAAGCATGGAGACTACTTTGAGAAATGTATAGTGAAGTTAGTGAGTGGTGATCTTCCTTCCCCACCACCACTTAAA
TTACCCAAGAACAAGGAGGGTGATAGAGGAGGCAAAAGTCTTCATATAGTTGAGGATAAGGCATCTGCTCCTGCAGAAGTTGCTTCGGAATCTCCTGAAGAGAGC
CAAGATAGTAATGATGAGCAACATTGGAAGGGAATCGGCAGCATAGTTGAGGGTGATCATGTACCAACCAAAAAGGTGGTGCATGTTGATGTCCTTAAATTCTTC
AACATATGTGTTGATGCTGCAATTTCTGACGTTCAACGACAAGTTGCTTCAGCTATGTGGGCCATTCTACATAAGAATATTATACACACTTCAATTGATAAGGCT
TCATCTCTCGAACCAGAAGTGCGTAAAATTTTTCATGTTGTTTCAGGGACGTATGTAGTTAATCTTACTTCTCTCAAAGATTTTATAGGTGGCTATTTTCAGAAG
GCCGCAACTTACGATAACCTACAATCCTTAGTTTCTTCTCGGCTGACTTTGACAAGTAAGGATTGCCAACTAGAGGAGTACAAACTTAGTTTGGAGAAGATATTA
TGTGACGAGCAACATGCACTTGAGGAGAGAGACAAGCTTCAACAACAACATGCACAAATATTGCAAGAAGAAGAGAAGTTGGAAGCCAAACTTATAGTTGCTCAG
GCTAAACGAAGCGAGGTTTCCAAGCAAGATGAGCACCTAGACCAGAAAAAGGTTGAAGCTTCTAAAGTACGGGAGAAAATGGGTGACAATTAA
Protein sequenceShow/hide protein sequence
MQSNRSTLILIILYTHDSSVSCVYHLPLETLAIPPSLELALYALVKYSSQLNDLQLLHGNHSVLAGRTTLDKVVVMVLRVPELINDFEMIGIIARYRILGSDESS
LALVAPDCYDCLIKSSSSKGSMEDFITPSRTWDVLKLQEFVYEDYVTEILHIPISSSDVNFNSRACELVLESMVDDFNFFLVEGSLKSLDESKCSESSEYPIFWT
FSNVPNESPLCYSCDRALACLSMHYVYGWLARYFNTHYKTPMELPDPQMIEFSVKAIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLK
LPKNKEGDRGGKSLHIVEDKASAPAEVASESPEESQDSNDEQHWKGIGSIVEGDHVPTKKVVHVDVLKFFNICVDAAISDVQRQVASAMWAILHKNIIHTSIDKA
SSLEPEVRKIFHVVSGTYVVNLTSLKDFIGGYFQKAATYDNLQSLVSSRLTLTSKDCQLEEYKLSLEKILCDEQHALEERDKLQQQHAQILQEEEKLEAKLIVAQ
AKRSEVSKQDEHLDQKKVEASKVREKMGDN