CuGenDBv2

Gene ID	Moc03g20610
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein RDM1-like
Genome location	chr3:14031382..14032059
RNA-Seq Expression	Moc03g20610
Synteny	Moc03g20610
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]

4.7e-88

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022159295.1 protein RDM1-like [Momordica charantia]

1.8e-95

99.43

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022951070.1 protein RDM1-like [Cucurbita moschata]

4.7e-88

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022974457.1 protein RDM1-like [Cucurbita maxima]

3.0e-87

89.66

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSE +L KRAEMYQEYMKQIPIPA+RGSVIPFTTW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]

2.1e-88

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TS+G+L KRAEMYQEYMKQIPIPAHRGSVIPFTTW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E3H6 protein RDM1-like

8.6e-96

99.43

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GHM4 protein RDM1-like

2.3e-88

90.23

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GV10 protein RDM1

3.6e-86

89.08

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPSMDD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSVIPFTTW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1IGA1 protein RDM1-like

1.5e-87

89.66

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSE +L KRAEMYQEYMKQIPIPA+RGSVIPFTTW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

8.1e-86

88.51

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPS+DD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSVIPFTTW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLR

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

4.9e-48

54.6

Show/hide

Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLRYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS+IPFT+WVGL  S+KQLY QPL YLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLRYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

3.5e-49

54.6

Show/hide

Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLRYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS+IPFT+WVGL  S+KQLY QPL YLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLRYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

Sequences

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CDS sequence

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ATGAAGAGGCCAATGCCATGGAACGAACAAGTGGATATTATTTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGTCAAAATGATGGGTTTGAGTTCAAGCC
TTCCATGGATGATTTGAAAATCCCTGCCAAAGAAATCACATCTGAAGGTTTGTTGACTAAAAGAGCAGAAATGTATCAAGAATACATGAAACAGATACCAATCCCAGCAC
ACCGTGGTTCTGTAATACCATTTACAACATGGGTGGGATTGGGCAAATCTATAAAGCAGCTATATAGTCAGCCTTTGCGTTACCTGACTAATATTCAACTAAAACAGTGG
GATCAATTAAGATTCGGAAGTTCGGATGAATATAAGCCATTGGATACTTTAATTCATCCGAGTAAAGCTGAAGCAACCATATGGATGGTTGAAGAGATTCATAGGCGCAC
CTCGTCCCATCATCATGTTGCTAAACTCTGGCTATCAGACCCAATGCACCATGCGTATGTTGACTCCATTTTCCCCCAACTATGA

mRNA sequence

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Protein sequence

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MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLRYLTNIQLKQW
DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

Moc03g20610 (gene) of Bitter gourd (OHB3-1) v2 genome