CuGenDBv2

Gene ID	Moc03g20740
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein RDM1-like
Genome location	chr3:14142752..14155918
RNA-Seq Expression	Moc03g20740
Synteny	Moc03g20740
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR002683 - PsbP, C-terminal IPR015270 - Protein RDM1, plant IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich IPR036319 - RDM1 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6597432.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-89

88.4

Show/hide

Query:  RNYILYDMKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQ
        ++ ILY MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+D  KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQ
Subjt:  RNYILYDMKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQ

Query:  LYSQPLHYLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        LY QPLHYLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  LYSQPLHYLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-89

90.4

Show/hide

Query:  LYDMKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQ
        LY MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY Q
Subjt:  LYDMKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQ

Query:  PLHYLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        PLHYLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  PLHYLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022159295.1 protein RDM1-like [Momordica charantia]

5.0e-95

99.43

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022951070.1 protein RDM1-like [Cucurbita moschata]

1.6e-88

90.8

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]

7.0e-89

90.8

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TS+G+L KRAEMYQEYMKQIPIPAHRGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E3H6 protein RDM1-like

2.4e-95

99.43

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GHM4 protein RDM1-like

7.6e-89

90.8

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GV10 protein RDM1

1.2e-86

89.66

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPSMDD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1IGA1 protein RDM1-like

4.9e-88

90.23

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSE +L KRAEMYQEYMKQIPIPA+RGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

2.7e-86

89.08

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPS+DD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

1.3e-48

55.21

Show/hide

Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS+IPFT+WVGL  S+KQLY QPLHYLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

Q9LXX5 PsbP domain-containing protein 6, chloroplastic

3.6e-56

80.62

Show/hide

Query:  EPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGST
        EPW+EVKFE++KQGK+QVVASPLIRLTNKPNATIED+G PEKVIASLGPFVTGNSYD +ELL+ S+EK+GDQTYYKY LETP+ALTG+HNLAKATAKGST
Subjt:  EPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGST

Query:  VVLFVASANDKQWPASEKILRTMLDSFQL
        VVLFV SA +KQW +S+K L  +LDSFQL
Subjt:  VVLFVASANDKQWPASEKILRTMLDSFQL

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

8.9e-50

55.21

Show/hide

Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS+IPFT+WVGL  S+KQLY QPLHYLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

AT3G56650.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

2.6e-57

80.62

Show/hide

Query:  EPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGST
        EPW+EVKFE++KQGK+QVVASPLIRLTNKPNATIED+G PEKVIASLGPFVTGNSYD +ELL+ S+EK+GDQTYYKY LETP+ALTG+HNLAKATAKGST
Subjt:  EPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGST

Query:  VVLFVASANDKQWPASEKILRTMLDSFQL
        VVLFV SA +KQW +S+K L  +LDSFQL
Subjt:  VVLFVASANDKQWPASEKILRTMLDSFQL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGACTTTTTGGGATCAAACCTCTGGATCCTCTCTTTTTCTTGGAGGCAAGCAGTCTGTGATTGTATTTTTATCTCCTTCTCCAATCCTTTTCACTTTAAACTTTTG
TCTCCAGAAAGATTCCTCTTTGGCTGCAAGTGTGAGGAGCTGTTCCCTGATTTTGGATCTTTCTTTTTGTGATATGGGACAGTTTTTTCGGAGGCTCGTGGGGTGGATGC
AAACAAAGAAAAAACAACTTGCCATTGTGGAAATGTCTGCTGTTACCATAATTTATGATATTCAATCTCATATAGCAAGAAATTCAAAAATTTCCGGGACAGTAGCACGA
GAAGAAATGTTTCTTTTGTGGTCTTATGAAATATATGGCTGGAGTGACTGTTCAGTAATGTGGAGAGGGCTTAAGAGGAGGTATCGATCTCGACTAGAGCCATGGGTAGA
GGTAAAATTTGAAGATGACAAACAAGGGAAAATCCAGGTAGTGGCTTCCCCTTTGATTCGTCTTACTAATAAGCCTAATGCTACAATTGAAGACATAGGTAGCCCTGAGA
AGGTGATCGCTTCGCTTGGCCCTTTCGTTACTGGAAATTCATACGACCCAGAAGAGCTCCTTGAAGCATCAGTTGAGAAACTCGGTGATCAGACGTACTACAAATACACA
CTTGAGACTCCCTATGCTCTGACGGGGACACACAATCTAGCTAAGGCAACGGCAAAAGGAAGCACAGTTGTCTTGTTTGTGGCTAGTGCAAATGATAAACAATGGCCGGC
ATCTGAGAAAATTCTGAGAACCATGCTCGATTCTTTCCAGCTGAAGATTTGCCATCGCTATTGGTTGTCTCTCACTGCTGCACTACCGCCCTCAGTTTTCTCTCCACAAC
TCAAAGGAGTACTTGCTCACAATGATCCTACGCCAGAGAGAGATCTCCAAAGGAATTACATTCTTTACGATATGAAGAGGCCAATGCCATGGAACGAACAAGTGGATATT
ATTTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGTCAAAATGATGGGTTTGAGTTCAAGCCTTCCATGGATGATTTGAAAATCCCTGCCAAAGAAATCAC
ATCTGAAGGTTTGTTGACTAAAAGAGCAGAAATGTATCAAGAATACATGAAACAGATACCAATCCCAGCACACCGTGGTTCTGTAATACCATTTACAACATGGGTGGGAT
TGGGCAAATCTATAAAGCAGCTATATAGTCAGCCTTTGCATTACCTGACTAATATTCAACTAAAACAGTGGGATCAATTAAGATTCGGAAGTTCGGATGAATATAAGCCA
TTGGATACTTTAATTCATCCGAGTAAAGCTGAAGCAACCATATGGATGGTTGAAGAGATTCATAGGCGCACCTCGTCCCATCATCATGTTGCTAAACTCTGGCTATCAGA
CCCAATGCACCATGCGTATGTTGACTCCATTTTCCCCCAACTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

METFWDQTSGSSLFLGGKQSVIVFLSPSPILFTLNFCLQKDSSLAASVRSCSLILDLSFCDMGQFFRRLVGWMQTKKKQLAIVEMSAVTIIYDIQSHIARNSKISGTVAR
EEMFLLWSYEIYGWSDCSVMWRGLKRRYRSRLEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYT
LETPYALTGTHNLAKATAKGSTVVLFVASANDKQWPASEKILRTMLDSFQLKICHRYWLSLTAALPPSVFSPQLKGVLAHNDPTPERDLQRNYILYDMKRPMPWNEQVDI
ISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQWDQLRFGSSDEYKP
LDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

Moc03g20740 (gene) of Bitter gourd (OHB3-1) v2 genome