; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g20780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g20780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:14169524..14171941
RNA-Seq ExpressionMoc03g20780
SyntenyMoc03g20780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]3.0e-5676.97Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE
        MAEFVVID RSAYNAIFGRP+IHS R VPSTLHQ +KYSTPNGV  VRGEQ+ SRE YASALKG SVCALEEQ   D       DLP+V KR+F   TEE
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE

Query:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI
        LELVPLLSPE+Q+SIGTKLGATDREE INFLR+NSNVF+WSHE+M GIDPKI
Subjt:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI

XP_022149985.1 uncharacterized protein LOC111018267 [Momordica charantia]1.6e-5778.95Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE
        MAEFVVI+GRSAYNAIFGRPIIHSF+ VPSTLHQV+KYSTPNGV T+RGEQKTSRE YAS LKGSSVCALEEQ + D       DLP+  KR+FS P EE
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE

Query:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI
        LELVPLLS E+Q+SI TKLGATDREELINFLRSNS+VF+WSHEDM GID KI
Subjt:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI

XP_022152367.1 uncharacterized protein LOC111020111 [Momordica charantia]2.3e-4082.57Show/hide
Query:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQDDLPRVSKRQFSPPTEELELV
        V QMAEFVVIDGR AYNAIFGRPIIHSFR VPSTLHQV+KYSTPNGV TVRGEQKTSRE YAS LKGSSVC LEEQ +QDD PR  KRQFSP  EELELV
Subjt:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQDDLPRVSKRQFSPPTEELELV

Query:  PLLSPEKQI
        PLLSP + +
Subjt:  PLLSPEKQI

XP_022154846.1 uncharacterized protein LOC111022006 [Momordica charantia]1.8e-5677.78Show/hide
Query:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP
        V QMAEFVVID +SAYNAIFGRPIIHSF  V STLHQV+KYST NGV TVRGEQKTSR+ YAS LKG +VC LEEQT       S+ DLP+ SKRQFSPP
Subjt:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP

Query:  TEELELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDP
        TEELELVPLLSPEK ++IGTKL ATDR+ELINFLRSNS+VF+WSHEDM GIDP
Subjt:  TEELELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDP

XP_022158414.1 uncharacterized protein LOC111024904 [Momordica charantia]2.3e-4080.87Show/hide
Query:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP
        V QMAEFVVIDGRSAYNAIFGRPIIHSFR VPSTLHQV+KYSTPN V  VRGEQKTSRE YASALKGS+VCALEEQT       S+ DLP+  KRQF PP
Subjt:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP

Query:  TEELELVPLLSPEKQ
        TEELELVPLLSPE+Q
Subjt:  TEELELVPLLSPEKQ

TrEMBL top hitse value%identityAlignment
A0A6J1D6M1 Ribonuclease H1.5e-5676.97Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE
        MAEFVVID RSAYNAIFGRP+IHS R VPSTLHQ +KYSTPNGV  VRGEQ+ SRE YASALKG SVCALEEQ   D       DLP+V KR+F   TEE
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE

Query:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI
        LELVPLLSPE+Q+SIGTKLGATDREE INFLR+NSNVF+WSHE+M GIDPKI
Subjt:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI

A0A6J1D787 uncharacterized protein LOC1110182677.8e-5878.95Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE
        MAEFVVI+GRSAYNAIFGRPIIHSF+ VPSTLHQV+KYSTPNGV T+RGEQKTSRE YAS LKGSSVCALEEQ + D       DLP+  KR+FS P EE
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQD-------DLPRVSKRQFSPPTEE

Query:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI
        LELVPLLS E+Q+SI TKLGATDREELINFLRSNS+VF+WSHEDM GID KI
Subjt:  LELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKI

A0A6J1DG07 uncharacterized protein LOC1110201111.1e-4082.57Show/hide
Query:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQDDLPRVSKRQFSPPTEELELV
        V QMAEFVVIDGR AYNAIFGRPIIHSFR VPSTLHQV+KYSTPNGV TVRGEQKTSRE YAS LKGSSVC LEEQ +QDD PR  KRQFSP  EELELV
Subjt:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQDDLPRVSKRQFSPPTEELELV

Query:  PLLSPEKQI
        PLLSP + +
Subjt:  PLLSPEKQI

A0A6J1DPX9 uncharacterized protein LOC1110220068.6e-5777.78Show/hide
Query:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP
        V QMAEFVVID +SAYNAIFGRPIIHSF  V STLHQV+KYST NGV TVRGEQKTSR+ YAS LKG +VC LEEQT       S+ DLP+ SKRQFSPP
Subjt:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP

Query:  TEELELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDP
        TEELELVPLLSPEK ++IGTKL ATDR+ELINFLRSNS+VF+WSHEDM GIDP
Subjt:  TEELELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDP

A0A6J1DZB9 uncharacterized protein LOC1110249041.1e-4080.87Show/hide
Query:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP
        V QMAEFVVIDGRSAYNAIFGRPIIHSFR VPSTLHQV+KYSTPN V  VRGEQKTSRE YASALKGS+VCALEEQT       S+ DLP+  KRQF PP
Subjt:  VDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQT-------SQDDLPRVSKRQFSPP

Query:  TEELELVPLLSPEKQ
        TEELELVPLLSPE+Q
Subjt:  TEELELVPLLSPEKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATACTCGCGGGGAAGGAAAAACGAGCATTGCCAATATCTTGTCCCTCCCAACATATCTAGCATTGGGGTGGACCAGATGGCTGAGTTTGTAGTGATCGATGGCAG
GTCGGCTTACAACGCCATCTTTGGGAGACCTATCATCCACTCATTCCGGACCGTCCCTTCCACACTGCATCAAGTCATGAAGTATTCAACCCCTAATGGAGTCAGCACGG
TCCGAGGTGAGCAAAAGACTTCAAGGGAGCGTTACGCATCCGCGCTCAAAGGGTCGTCAGTATGTGCCCTGGAAGAGCAAACTAGTCAAGACGACCTTCCGAGGGTAAGC
AAAAGGCAGTTCTCCCCACCAACAGAGGAGCTCGAGCTCGTTCCCTTGCTTAGCCCTGAAAAACAAATAAGCATAGGAACCAAGCTGGGGGCCACTGACAGGGAAGAACT
GATCAACTTCCTCAGGTCCAACTCGAACGTCTTTTCATGGTCTCACGAGGACATGTCTGGCATCGACCCAAAGATCGGTCCCGATCGAGATCTTGGACAACCCTTCAATC
TTGGAGCCAGATGTGATGGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATACTCGCGGGGAAGGAAAAACGAGCATTGCCAATATCTTGTCCCTCCCAACATATCTAGCATTGGGGTGGACCAGATGGCTGAGTTTGTAGTGATCGATGGCAG
GTCGGCTTACAACGCCATCTTTGGGAGACCTATCATCCACTCATTCCGGACCGTCCCTTCCACACTGCATCAAGTCATGAAGTATTCAACCCCTAATGGAGTCAGCACGG
TCCGAGGTGAGCAAAAGACTTCAAGGGAGCGTTACGCATCCGCGCTCAAAGGGTCGTCAGTATGTGCCCTGGAAGAGCAAACTAGTCAAGACGACCTTCCGAGGGTAAGC
AAAAGGCAGTTCTCCCCACCAACAGAGGAGCTCGAGCTCGTTCCCTTGCTTAGCCCTGAAAAACAAATAAGCATAGGAACCAAGCTGGGGGCCACTGACAGGGAAGAACT
GATCAACTTCCTCAGGTCCAACTCGAACGTCTTTTCATGGTCTCACGAGGACATGTCTGGCATCGACCCAAAGATCGGTCCCGATCGAGATCTTGGACAACCCTTCAATC
TTGGAGCCAGATGTGATGGAGGTTGA
Protein sequenceShow/hide protein sequence
MLYSRGRKNEHCQYLVPPNISSIGVDQMAEFVVIDGRSAYNAIFGRPIIHSFRTVPSTLHQVMKYSTPNGVSTVRGEQKTSRERYASALKGSSVCALEEQTSQDDLPRVS
KRQFSPPTEELELVPLLSPEKQISIGTKLGATDREELINFLRSNSNVFSWSHEDMSGIDPKIGPDRDLGQPFNLGARCDGG