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Moc03g21090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g21090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:14416299..14420065
RNA-Seq ExpressionMoc03g21090
SyntenyMoc03g21090
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8730942.1 Major allergen Pru ar 1 [Hibiscus syriacus]3.0e-0627.54Show/hide
Query:  DKEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMAL-------SNLLGDKSMKFSDICD------------------
        +++W   D  A+ +IRL L+ NVA  +A +KT + LM AL+  YEKPSA++K  +   L       S+  G+  +KF D+ D                  
Subjt:  DKEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMAL-------SNLLGDKSMKFSDICD------------------

Query:  ----AAVIE------------------EVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLE
              ++E                  ++ G GDI LK   +   +L+ V+++P  ++NL+S+G+L+
Subjt:  ----AAVIE------------------EVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLE

RVW36164.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.2e-0843.9Show/hide
Query:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK
        KEW   D+  + +IRL L+  VA  +  +KT   LMKAL+  YE PSAN+KE M+MA+SN  G + +K++DI D  + E+++
Subjt:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK

RVW93884.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.6e-0739.02Show/hide
Query:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK
        +EW   D   + +I+L L+ +VA  +  +KT   LMKAL+  YEK S N+KE M++ +SN  G + +K++DI D  ++EE++
Subjt:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK

RVX04667.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.6e-0743.37Show/hide
Query:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSK-EAMKMALSNLLGDKSMKFSDICDAAVIEEVK
        +EW   D   + +IRL L+ +VA  +  +KT   LMKAL+  YEKPSAN+K   M+MA+SN  G + +K++DI D  + EE++
Subjt:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSK-EAMKMALSNLLGDKSMKFSDICDAAVIEEVK

XP_022157059.1 uncharacterized protein LOC111023870 [Momordica charantia]2.2e-0936.2Show/hide
Query:  IEEVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLETMVTGVSSQKGISETEDEPPG-------------------------CRWFKASISNL-
        I +V+GIGD+ LKT    ELVL+ V+Y+P FR NLLS+GKLETM    S ++ +     +  G                          R  +    NL 
Subjt:  IEEVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLETMVTGVSSQKGISETEDEPPG-------------------------CRWFKASISNL-

Query:  -------SCRRFDELMKSHKQKSASKENTKFCTKVKGNVSRVVMDLDETAKSSEGRFTFRGRW
               + RR  EL+KSH++ SA K          G VS VV DL  +AKSS G  +F+GRW
Subjt:  -------SCRRFDELMKSHKQKSASKENTKFCTKVKGNVSRVVMDLDETAKSSEGRFTFRGRW

TrEMBL top hitse value%identityAlignment
A0A438DL06 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-0843.9Show/hide
Query:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK
        KEW   D+  + +IRL L+  VA  +  +KT   LMKAL+  YE PSAN+KE M+MA+SN  G + +K++DI D  + E+++
Subjt:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK

A0A438IB17 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-0739.02Show/hide
Query:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK
        +EW   D   + +I+L L+ +VA  +  +KT   LMKAL+  YEK S N+KE M++ +SN  G + +K++DI D  ++EE++
Subjt:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMKFSDICDAAVIEEVK

A0A438J6T4 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-0743.37Show/hide
Query:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSK-EAMKMALSNLLGDKSMKFSDICDAAVIEEVK
        +EW   D   + +IRL L+ +VA  +  +KT   LMKAL+  YEKPSAN+K   M+MA+SN  G + +K++DI D  + EE++
Subjt:  KEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSK-EAMKMALSNLLGDKSMKFSDICDAAVIEEVK

A0A6A3CTZ2 Major allergen Pru ar 11.5e-0627.54Show/hide
Query:  DKEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMAL-------SNLLGDKSMKFSDICD------------------
        +++W   D  A+ +IRL L+ NVA  +A +KT + LM AL+  YEKPSA++K  +   L       S+  G+  +KF D+ D                  
Subjt:  DKEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMAL-------SNLLGDKSMKFSDICD------------------

Query:  ----AAVIE------------------EVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLE
              ++E                  ++ G GDI LK   +   +L+ V+++P  ++NL+S+G+L+
Subjt:  ----AAVIE------------------EVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLE

A0A6J1DVE9 uncharacterized protein LOC1110238701.1e-0936.2Show/hide
Query:  IEEVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLETMVTGVSSQKGISETEDEPPG-------------------------CRWFKASISNL-
        I +V+GIGD+ LKT    ELVL+ V+Y+P FR NLLS+GKLETM    S ++ +     +  G                          R  +    NL 
Subjt:  IEEVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLETMVTGVSSQKGISETEDEPPG-------------------------CRWFKASISNL-

Query:  -------SCRRFDELMKSHKQKSASKENTKFCTKVKGNVSRVVMDLDETAKSSEGRFTFRGRW
               + RR  EL+KSH++ SA K          G VS VV DL  +AKSS G  +F+GRW
Subjt:  -------SCRRFDELMKSHKQKSASKENTKFCTKVKGNVSRVVMDLDETAKSSEGRFTFRGRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAAGTGAAGAAGGTAGATGAAGGTGCATACAAGTGGGTGTTGGTCTTACCTCACGAGAAATGGAGTAAGCAGGCCTTTAGTTGTGGATCTAAGTGTGATGATGT
AGTTAATAATCTAGATAAAGAGTGGATAGAGAATGATGAGTATGCAGTAGCAATCATCAGGCTGTGTTTAACGATGAATGTGGCAAGTCTCTTGGCGAGCCAGAAAACAG
CAATCAGATTGATGAAGGCTTTGACTGACAGGTATGAAAAACCTTCTGCCAACAGCAAGGAGGCGATGAAAATGGCATTGTCGAATTTGTTGGGGGACAAGAGTATGAAA
TTTTCAGATATCTGTGATGCTGCAGTTATTGAGGAGGTCAAAGGAATTGGGGATATCTGTTTAAAGACCGATGGGGAAAAAGAGTTGGTGTTGCAAGCTGTCAAGTATGT
TCCAAGGTTCAGAAAGAATTTGTTATCTATTGGAAAACTAGAGACGATGGTTACAGGAGTGAGTTCGCAGAAGGGGATCTCAGAGACAGAGGATGAACCACCGGGCTGTA
GATGGTTTAAGGCTTCGATTTCTAACCTCAGTTGTCGACGGTTTGACGAGCTGATGAAGTCGCATAAGCAAAAGAGTGCATCAAAGGAGAATACTAAATTTTGTACTAAA
GTCAAGGGTAATGTCTCGAGGGTGGTAATGGACTTGGATGAGACTGCCAAGTCATCAGAGGGGAGATTTACTTTTAGAGGTCGTTGGGTTCAATTGAGGAAGGAAGCATC
AGGGACCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAAGTGAAGAAGGTAGATGAAGGTGCATACAAGTGGGTGTTGGTCTTACCTCACGAGAAATGGAGTAAGCAGGCCTTTAGTTGTGGATCTAAGTGTGATGATGT
AGTTAATAATCTAGATAAAGAGTGGATAGAGAATGATGAGTATGCAGTAGCAATCATCAGGCTGTGTTTAACGATGAATGTGGCAAGTCTCTTGGCGAGCCAGAAAACAG
CAATCAGATTGATGAAGGCTTTGACTGACAGGTATGAAAAACCTTCTGCCAACAGCAAGGAGGCGATGAAAATGGCATTGTCGAATTTGTTGGGGGACAAGAGTATGAAA
TTTTCAGATATCTGTGATGCTGCAGTTATTGAGGAGGTCAAAGGAATTGGGGATATCTGTTTAAAGACCGATGGGGAAAAAGAGTTGGTGTTGCAAGCTGTCAAGTATGT
TCCAAGGTTCAGAAAGAATTTGTTATCTATTGGAAAACTAGAGACGATGGTTACAGGAGTGAGTTCGCAGAAGGGGATCTCAGAGACAGAGGATGAACCACCGGGCTGTA
GATGGTTTAAGGCTTCGATTTCTAACCTCAGTTGTCGACGGTTTGACGAGCTGATGAAGTCGCATAAGCAAAAGAGTGCATCAAAGGAGAATACTAAATTTTGTACTAAA
GTCAAGGGTAATGTCTCGAGGGTGGTAATGGACTTGGATGAGACTGCCAAGTCATCAGAGGGGAGATTTACTTTTAGAGGTCGTTGGGTTCAATTGAGGAAGGAAGCATC
AGGGACCATTTAG
Protein sequenceShow/hide protein sequence
MQEVKKVDEGAYKWVLVLPHEKWSKQAFSCGSKCDDVVNNLDKEWIENDEYAVAIIRLCLTMNVASLLASQKTAIRLMKALTDRYEKPSANSKEAMKMALSNLLGDKSMK
FSDICDAAVIEEVKGIGDICLKTDGEKELVLQAVKYVPRFRKNLLSIGKLETMVTGVSSQKGISETEDEPPGCRWFKASISNLSCRRFDELMKSHKQKSASKENTKFCTK
VKGNVSRVVMDLDETAKSSEGRFTFRGRWVQLRKEASGTI