CuGenDBv2

Gene ID	Moc03g21120
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase domain-containing protein
Genome location	chr3:14431644..14432857
RNA-Seq Expression	Moc03g21120
Synteny	Moc03g21120
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]

5.1e-18

36.17

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Query:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV
        +W V +    SWC R IL  ++ L+   +  +G+G RC VW D WL  G  +  +   +     +R    L  F  P    L  RG        E +   
Subjt:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV

Query:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
           + L+  + +G   GNI KHSF AWLA++DRLGTRD    WD SV  S  +C   +E RDHLFF  PF   VW  ++    SSHR+
Subjt:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]

5.1e-18

36.17

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Query:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV
        +W V +    SWC R IL  ++ L+   +  +G+G RC VW D WL  G  +  +   +     +R    L  F  P    L  RG        E +   
Subjt:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV

Query:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
           + L+  + +G   GNI KHSF AWLA++DRLGTRD    WD SV  S  +C   +E RDHLFF  PF   VW  ++    SSHR+
Subjt:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]

5.1e-18

36.17

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Query:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV
        +W V +    SWC R IL  ++ L+   +  +G+G RC VW D WL  G  +  +   +     +R    L  F  P    L  RG        E +   
Subjt:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV

Query:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
           + L+  + +G   GNI KHSF AWLA++DRLGTRD    WD SV  S  +C   +E RDHLFF  PF   VW  ++    SSHR+
Subjt:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]

5.6e-17

61.73

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Query:  YSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
        +SL++FG   GNI KHSFIAWLA+RDRL TRD LC WD+SV+ S   C   E  D+LFFE PFS  VW  MI WAGSS R+
Subjt:  YSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]

2.7e-19

37.63

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Query:  PLFQFAIGDGQRCFVWHDAWLPGG-------------LFIRGLVTGLSMMLQARPGR-----MLLIFYFPMVLGTRGV------------VESLIGVECV
        P F  + GDG+ CFVWHD WL GG             +    +   +  +L     R     + L+   P V+  R V            V  L  V  V
Subjt:  PLFQFAIGDGQRCFVWHDAWLPGG-------------LFIRGLVTGLSMMLQARPGR-----MLLIFYFPMVLGTRGV------------VESLIGVECV

Query:  GCVAASQ----TLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
          +   +    + + L++FG   GNI KHSFI+WLA+RDRL TR+ L  W+  V A+   CA LE RDHLF + P+S  VW  MI WAGSSHRV
Subjt:  GCVAASQ----TLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSI8 uncharacterized protein LOC103493225

2.5e-18

36.17

Show/hide

Query:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV
        +W V +    SWC R IL  ++ L+   +  +G+G RC VW D WL  G  +  +   +     +R    L  F  P    L  RG        E +   
Subjt:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV

Query:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
           + L+  + +G   GNI KHSF AWLA++DRLGTRD    WD SV  S  +C   +E RDHLFF  PF   VW  ++    SSHR+
Subjt:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

A0A5A7UP65 Reverse transcriptase

2.5e-18

36.17

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Query:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV
        +W V +    SWC R IL  ++ L+   +  +G+G RC VW D WL  G  +  +   +     +R    L  F  P    L  RG        E +   
Subjt:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV

Query:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
           + L+  + +G   GNI KHSF AWLA++DRLGTRD    WD SV  S  +C   +E RDHLFF  PF   VW  ++    SSHR+
Subjt:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

A0A5D3D7P6 Reverse transcriptase

2.5e-18

36.17

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Query:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV
        +W V +    SWC R IL  ++ L+   +  +G+G RC VW D WL  G  +  +   +     +R    L  F  P    L  RG        E +   
Subjt:  IWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFP--MVLGTRGVVESLIGVECVGCV

Query:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
           + L+  + +G   GNI KHSF AWLA++DRLGTRD    WD SV  S  +C   +E RDHLFF  PF   VW  ++    SSHR+
Subjt:  AASQTLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VC-ADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

A0A6J1DTG0 uncharacterized protein LOC111024165

2.7e-17

61.73

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Query:  YSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
        +SL++FG   GNI KHSFIAWLA+RDRL TRD LC WD+SV+ S   C   E  D+LFFE PFS  VW  MI WAGSS R+
Subjt:  YSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

A0A6J1E271 uncharacterized protein LOC111025324

1.3e-19

37.63

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Query:  PLFQFAIGDGQRCFVWHDAWLPGG-------------LFIRGLVTGLSMMLQARPGR-----MLLIFYFPMVLGTRGV------------VESLIGVECV
        P F  + GDG+ CFVWHD WL GG             +    +   +  +L     R     + L+   P V+  R V            V  L  V  V
Subjt:  PLFQFAIGDGQRCFVWHDAWLPGG-------------LFIRGLVTGLSMMLQARPGR-----MLLIFYFPMVLGTRGV------------VESLIGVECV

Query:  GCVAASQ----TLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV
          +   +    + + L++FG   GNI KHSFI+WLA+RDRL TR+ L  W+  V A+   CA LE RDHLF + P+S  VW  MI WAGSSHRV
Subjt:  GCVAASQ----TLYSLIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

6.2e-06

41.67

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Query:  GNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLASVC----ADLEFRDHLFFEFPFSSGVW
        G I KH+FIAW+ +R RL T+D +  W F +   +C       E R HLFF+  F+  VW
Subjt:  GNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLASVC----ADLEFRDHLFFEFPFSSGVW

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.5e-04

42.59

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Query:  KHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADL-EFRDHLFFEFPFSSGV
        K+S +AW+A+++RL T D +  W+    +S  +C  L E RDHLFF  P+S+ V
Subjt:  KHSFIAWLAVRDRLGTRDCLCCWDFSVLAS--VCADL-EFRDHLFFEFPFSSGV

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.4e-05

44.83

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Query:  GNISKHSFIAWLAVRDRLGTRDCLCCWDFSV--LASVC-ADLEFRDHLFFEFPFSSGV
        G I KH+FI+W+ +R RL TRD L  W   V  L  +C A  E R HLFF+  F+  +
Subjt:  GNISKHSFIAWLAVRDRLGTRDCLCCWDFSV--LASVC-ADLEFRDHLFFEFPFSSGV

Sequences

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CDS sequence

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ATGCTTTGGCTTCATTTGAAGATTTGGCGGGTCTTGTCGCGAGTATTTGGAAGAGCTCGTTTTTCAGGGCAGGCCTTCCTGATGCGAAGCCTTTGCTTGAGCGGATTGTC
TCTCGTGTTCAAGTTGGTCAGCTCGGGTGCTTTCTTTTGCTGGCTAGTTGCAGCTTATCTGGTCGATTCTGTAGAGCTTTCAGGTCTATGGACCAGTGTGTTATCCTTCC
GGCTTGGGTTGTTCATGATGTTGAGCAGATTCTGCACTTTTTCTTGTAGAAGGGGTGCGAGAGCGGGCGGTCAAGGGCTAAGGTGGCTTGGTTTGAGGCTTATATTCTTC
GGGAAATTTTGTATTTGGACCGTTCATGCTTCGTCTCGGTTCTCTTGGTGTTGGCGGGATATTCTTTCTATCCGGGATATTTTACGACCTCTGTTTCAGTTTGCTATTGG
AGATGGTCAGCGTTGTTTTGTGTGGCATGACGCTTGGCTTCCGGGGGGCCTATTTATCCGAGGTTTGGTGACCGGATTATCTATGATGCTGCAAGCTCGTCCCGGGCGAA
TGTTGCTTATTTTCTATTTTCCGATGGTTCTGGGCACTCGAGGCGTTGTCGAGTCTCTTATCGGTGTCGAGTGCGTGGGTTGTGTTGCGGCCAGCCAGACCTTATATTCC
TTGATTTTCTTTGGCTCGGTTCATGGGAACATTTCGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTGATCGACTTGGTACGAGGGATTGCTTATGTTGTTGGGACTT
TTCTGTTCTTGCTTCTGTGTGTGCTGACCTGGAGTTTCGAGATCATCTATTCTTTGAGTTCCCCTTTAGTTCAGGGGTCTGGTATGACATGATTGATTGGGCTGGTTCTT
CTCACCGAGTTTAA

mRNA sequence

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Protein sequence

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MLWLHLKIWRVLSRVFGRARFSGQAFLMRSLCLSGLSLVFKLVSSGAFFCWLVAAYLVDSVELSGLWTSVLSFRLGLFMMLSRFCTFSCRRGARAGGQGLRWLGLRLIFF
GKFCIWTVHASSRFSWCWRDILSIRDILRPLFQFAIGDGQRCFVWHDAWLPGGLFIRGLVTGLSMMLQARPGRMLLIFYFPMVLGTRGVVESLIGVECVGCVAASQTLYS
LIFFGSVHGNISKHSFIAWLAVRDRLGTRDCLCCWDFSVLASVCADLEFRDHLFFEFPFSSGVWYDMIDWAGSSHRV

Moc03g21120 (gene) of Bitter gourd (OHB3-1) v2 genome