CuGenDBv2

Gene ID	Moc03g22190
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	polyadenylation and cleavage factor homolog 4-like
Genome location	chr3:15557063..15558271
RNA-Seq Expression	Moc03g22190
Synteny	Moc03g22190
Gene Ontology terms	GO:0010467 - gene expression (biological process) GO:0016071 - mRNA metabolic process (biological process)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573202.1 Polyadenylation and cleavage factor-like 4, partial [Cucurbita argyrosperma subsp. sororia]

8.7e-05

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF+SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

KAG7012378.1 Polyadenylation and cleavage factor-like 4 [Cucurbita argyrosperma subsp. argyrosperma]

8.7e-05

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF+SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

XP_022954959.1 polyadenylation and cleavage factor homolog 4-like [Cucurbita moschata]

8.7e-05

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF+SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

XP_022994287.1 polyadenylation and cleavage factor homolog 4-like [Cucurbita maxima]

1.1e-04

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF+SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

XP_023542573.1 polyadenylation and cleavage factor homolog 4-like [Cucurbita pepo subsp. pepo]

8.7e-05

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF+SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

TrEMBL top hits

e value

%identity

Alignment

A0A4D6N3K7 Pre-mRNA cleavage complex 2 protein Pcf11

7.2e-05

40.54

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Query:  DLKSSVVEVQSRCMVILPNQCMTWGLRFRSQEKLHDHMDWH---GREQKISRGWFMNKASWV----AYGRKDAP
        +LK  +  V +     LP QC + GLRFRSQE+   HMDWH    R Q++ R WF++   W+    A G K  P
Subjt:  DLKSSVVEVQSRCMVILPNQCMTWGLRFRSQEKLHDHMDWH---GREQKISRGWFMNKASWV----AYGRKDAP

A0A6J1GUI7 polyadenylation and cleavage factor homolog 4-like

4.2e-05

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF+SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

A0A6J1JVD4 polyadenylation and cleavage factor homolog 4-like

5.5e-05

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF+SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

A0A6J1KI02 polyadenylation and cleavage factor homolog 4-like isoform X2

7.2e-05

48.08

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF++QE+  +HMDWH         R+QK SR WF++ + W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

A0A6J1KKK6 polyadenylation and cleavage factor homolog 4-like isoform X1

7.2e-05

48.08

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF++QE+  +HMDWH         R+QK SR WF++ + W++
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

SwissProt top hits

e value

%identity

Alignment

Q0WPF2 Polyadenylation and cleavage factor homolog 4

4.1e-05

36.62

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVAYGRKDAPELEGG--PSQPS
        LP QC T GLRF+ QE+   HMDWH          +Q  SR WF++ + W++       E   G  P++P+
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVAYGRKDAPELEGG--PSQPS

Q9C710 Polyadenylation and cleavage factor homolog 1

2.0e-04

37.5

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH-------------GREQKISRGWFMNKASWV
        +P QC + GLRF+ QE+   HMDWH             G++ K SRGW  + + W+
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH-------------GREQKISRGWFMNKASWV

Arabidopsis top hits

e value

%identity

Alignment

AT1G66500.1 Pre-mRNA cleavage complex II

1.4e-05

37.5

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH-------------GREQKISRGWFMNKASWV
        +P QC + GLRF+ QE+   HMDWH             G++ K SRGW  + + W+
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH-------------GREQKISRGWFMNKASWV

AT4G04885.1 PCF11P-similar protein 4

2.9e-06

36.62

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Query:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVAYGRKDAPELEGG--PSQPS
        LP QC T GLRF+ QE+   HMDWH          +Q  SR WF++ + W++       E   G  P++P+
Subjt:  LPNQCMTWGLRFRSQEKLHDHMDWH--------GREQKISRGWFMNKASWVAYGRKDAPELEGG--PSQPS

AT5G43620.1 Pre-mRNA cleavage complex II

3.5e-04

29.13

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Query:  LDLKNDNLDLKSSDILDLKSMKSRDDLDLKSSV----VEVQSRCMVILPNQCMTWGLRFRSQEKLHDHMDWH-------------GREQKISRGWFMNKA
        L L N+  + K+S+  +  S+      D  SS+      V       +P QC + G+RF+ QE+   HMDWH             G++ K SRGW  + +
Subjt:  LDLKNDNLDLKSSDILDLKSMKSRDDLDLKSSV----VEVQSRCMVILPNQCMTWGLRFRSQEKLHDHMDWH-------------GREQKISRGWFMNKA

Query:  SWV
         W+
Subjt:  SWV

Sequences

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CDS sequence

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ATGACTGGATCTGAAGAGCAGGGACAATTTGGATCAGAAGAGCAGCGCGGTGTAAGCCCAGGCAGCAATCTGGATTTGAAGAGCGGTGGTGAACTAGATCTGAAGAACGA
CAATCTGGATCTGAAGAGCAGCGACATTCTAGATCTGAAGAGCATGAAGAGCAGGGATGATCTGGATCTGAAGAGCAGCGTGGTGGAAGTCCAGTCGCGTTGTATGGTAA
TCCTCCCCAACCAATGTATGACCTGGGGCCTCCGATTCCGCTCCCAGGAAAAGCTCCATGATCATATGGACTGGCATGGTAGGGAGCAAAAGATTTCTCGTGGCTGGTTC
ATGAATAAAGCTTCATGGGTTGCTTATGGGCGTAAGGATGCACCTGAACTTGAAGGTGGTCCATCCCAACCATCTGGTAAATGA

mRNA sequence

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Protein sequence

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MTGSEEQGQFGSEEQRGVSPGSNLDLKSGGELDLKNDNLDLKSSDILDLKSMKSRDDLDLKSSVVEVQSRCMVILPNQCMTWGLRFRSQEKLHDHMDWHGREQKISRGWF
MNKASWVAYGRKDAPELEGGPSQPSGK

Moc03g22190 (gene) of Bitter gourd (OHB3-1) v2 genome