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Moc03g22650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g22650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr3:16005890..16006686
RNA-Seq ExpressionMoc03g22650
SyntenyMoc03g22650
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047599.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.1e-1150.72Show/hide
Query:  KLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVED
        +  AIKQE TVE+Y++RF+ ++APLP+++++VLEG F NGL  +IR EV +M   GL+ +M  AQL E+
Subjt:  KLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVED

XP_022131713.1 uncharacterized protein LOC111004816 [Momordica charantia]7.5e-1358.9Show/hide
Query:  AIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKE
        AIKQE +VE+Y E F+A++A  P L +EVLE  +LNGL  ++RAEVLA +P GLDQIMR+AQL+ED    S+E
Subjt:  AIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKE

XP_022148929.1 uncharacterized protein LOC111017476 [Momordica charantia]8.5e-1734.84Show/hide
Query:  MVRMQLEERCDATEQEVTNLKEMLT--RVKEQVQINQKI---LETYMAKMDARHKRIERFMAHGSVEKSSMIE------------YSRGERSSVKR----
        M+  +LE RC A E+EVT++K  +T  +V+EQ  ++++I   LE++M+++          +    V+K+ + E            Y R +   V+     
Subjt:  MVRMQLEERCDATEQEVTNLKEMLT--RVKEQVQINQKI---LETYMAKMDARHKRIERFMAHGSVEKSSMIE------------YSRGERSSVKR----

Query:  ----KATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPD
                     W   R + T   + ++     F          +L AIKQE +V +Y E F+A++APLPQLSDEVLE  FLNGL  V+R++VLA EP 
Subjt:  ----KATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPD

Query:  GLDQIMRKAQLVEDIDLVSKE
        GL+QIM +AQLVEDI    +E
Subjt:  GLDQIMRKAQLVEDIDLVSKE

XP_022848903.1 uncharacterized protein LOC111371244 [Olea europaea var. sylvestris]2.7e-1032.74Show/hide
Query:  KMDARHKRIERFMAHG--------SVEKSSMI----EYSRGERSSVKRKATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTV
        +MD R +R+E  + HG          E+   I     + + E ++V  +        W   R         K+     F P     N+ K  A++QE TV
Subjt:  KMDARHKRIERFMAHG--------SVEKSSMI----EYSRGERSSVKRKATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTV

Query:  EDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEMEG
         DY   F+ +AAPL  + +++LEG F+NGLK +IRAEV  ++P GLD IM  AQ VED + + ++ +G
Subjt:  EDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEMEG

XP_031745472.1 uncharacterized protein K02A2.6-like [Cucumis sativus]4.1e-1129.08Show/hide
Query:  MVRMQLEERCDATEQEVTNLKEMLTRVKEQV-QINQKILETYMAKMDARHKRIERFMAHGSVEKSSMIEYSRGERSSVKRKATMKKLVSWRLRRPKLTVA
        M + Q+EER + TE+E+ +LKEM+  +K+ + ++  ++ E + AK     K+ E      S EK  +   S G+               W  RR ++   
Subjt:  MVRMQLEERCDATEQEVTNLKEMLTRVKEQV-QINQKILETYMAKMDARHKRIERFMAHGSVEKSSMIEYSRGERSSVKRKATMKKLVSWRLRRPKLTVA

Query:  SSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSK
           K    + F     +    +L  IKQE +  +Y+++F   +APLP +++ VL   FL GL+  ++AEV++  P  L++ M++AQLV D ++  K
Subjt:  SSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSK

TrEMBL top hitse value%identityAlignment
A0A5A7SLB5 Gypsy/ty3 element polyprotein3.7e-1054.93Show/hide
Query:  VEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEMEGRS
        V D+ ERF+A++APL  LSDEVLE  FLNGL   I+AEVL+ EP GL QIMR A  +ED  +V++   G++
Subjt:  VEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEMEGRS

A0A5D3BUF1 Ty3-gypsy retrotransposon protein2.9e-1036.36Show/hide
Query:  WRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVE
        W   R +       K    N F     E    +  AIKQE +V +++++F+ ++APLP++ +EVLEG F NGL  +I  EV +M   GL+ +M  AQL E
Subjt:  WRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVE

Query:  DIDLVSKEME
           LV +++E
Subjt:  DIDLVSKEME

A0A5D3CD29 Ty3-gypsy retrotransposon protein4.4e-1150.72Show/hide
Query:  KLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVED
        +  AIKQE TVE+Y++RF+ ++APLP+++++VLEG F NGL  +IR EV +M   GL+ +M  AQL E+
Subjt:  KLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVED

A0A6J1BU87 uncharacterized protein LOC1110048163.6e-1358.9Show/hide
Query:  AIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKE
        AIKQE +VE+Y E F+A++A  P L +EVLE  +LNGL  ++RAEVLA +P GLDQIMR+AQL+ED    S+E
Subjt:  AIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKE

A0A6J1D5H9 uncharacterized protein LOC1110174764.1e-1734.84Show/hide
Query:  MVRMQLEERCDATEQEVTNLKEMLT--RVKEQVQINQKI---LETYMAKMDARHKRIERFMAHGSVEKSSMIE------------YSRGERSSVKR----
        M+  +LE RC A E+EVT++K  +T  +V+EQ  ++++I   LE++M+++          +    V+K+ + E            Y R +   V+     
Subjt:  MVRMQLEERCDATEQEVTNLKEMLT--RVKEQVQINQKI---LETYMAKMDARHKRIERFMAHGSVEKSSMIE------------YSRGERSSVKR----

Query:  ----KATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPD
                     W   R + T   + ++     F          +L AIKQE +V +Y E F+A++APLPQLSDEVLE  FLNGL  V+R++VLA EP 
Subjt:  ----KATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPD

Query:  GLDQIMRKAQLVEDIDLVSKE
        GL+QIM +AQLVEDI    +E
Subjt:  GLDQIMRKAQLVEDIDLVSKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29750.1 Eukaryotic aspartyl protease family protein5.2e-0427.85Show/hide
Query:  PKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEME
        P    I+QE +V DY ERF+A+      L  +  E +FL GL+  ++  V  ++P+G++    +   +  + LV  +++
Subjt:  PKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEME

AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding1.6e-0535.71Show/hide
Query:  PKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVED
        P    I+QE +V +Y ERF+A+      L  + LE +FL GL+  ++  V  ++P+G+ Q+M  AQ +E+
Subjt:  PKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACGAATGCAACTGGAGGAACGTTGCGACGCTACGGAACAAGAGGTAACTAATCTGAAGGAGATGCTCACCAGAGTGAAGGAGCAGGTTCAGATTAACCAGAAGAT
CCTTGAAACTTACATGGCCAAGATGGATGCACGGCACAAAAGGATTGAGCGCTTCATGGCGCACGGCTCCGTCGAAAAGTCATCAATGATTGAATACAGTCGAGGAGAAA
GATCATCGGTAAAAAGGAAGGCGACAATGAAGAAACTCGTATCCTGGAGACTACGGAGACCGAAACTGACTGTAGCAAGTTCGAAAAAAAGCGACTATTCCAACGTTTTC
TACCCTCTAAACGGGGAAGATAATGTGCCAAAATTATTCGCGATAAAGCAGGAAACCACCGTTGAAGACTATATCGAACGGTTTAAGGCTATGGCAGCGCCGTTACCACA
ACTCTCCGACGAAGTCCTCGAAGGCGTTTTCCTCAACGGGCTGAAATCGGTGATTAGGGCTGAAGTTTTGGCCATGGAACCTGATGGGTTAGATCAAATTATGCGAAAAG
CCCAGTTAGTGGAAGATATTGACCTGGTGTCCAAGGAGATGGAGGGACGGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTACGAATGCAACTGGAGGAACGTTGCGACGCTACGGAACAAGAGGTAACTAATCTGAAGGAGATGCTCACCAGAGTGAAGGAGCAGGTTCAGATTAACCAGAAGAT
CCTTGAAACTTACATGGCCAAGATGGATGCACGGCACAAAAGGATTGAGCGCTTCATGGCGCACGGCTCCGTCGAAAAGTCATCAATGATTGAATACAGTCGAGGAGAAA
GATCATCGGTAAAAAGGAAGGCGACAATGAAGAAACTCGTATCCTGGAGACTACGGAGACCGAAACTGACTGTAGCAAGTTCGAAAAAAAGCGACTATTCCAACGTTTTC
TACCCTCTAAACGGGGAAGATAATGTGCCAAAATTATTCGCGATAAAGCAGGAAACCACCGTTGAAGACTATATCGAACGGTTTAAGGCTATGGCAGCGCCGTTACCACA
ACTCTCCGACGAAGTCCTCGAAGGCGTTTTCCTCAACGGGCTGAAATCGGTGATTAGGGCTGAAGTTTTGGCCATGGAACCTGATGGGTTAGATCAAATTATGCGAAAAG
CCCAGTTAGTGGAAGATATTGACCTGGTGTCCAAGGAGATGGAGGGACGGTCATAG
Protein sequenceShow/hide protein sequence
MVRMQLEERCDATEQEVTNLKEMLTRVKEQVQINQKILETYMAKMDARHKRIERFMAHGSVEKSSMIEYSRGERSSVKRKATMKKLVSWRLRRPKLTVASSKKSDYSNVF
YPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEMEGRS