; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g22710 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g22710
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:16049809..16051968
RNA-Seq ExpressionMoc03g22710
SyntenyMoc03g22710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]7.5e-1837.41Show/hide
Query:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR
        G  + I+CR FS TL G T +                         GG  + RP  YLLT++QKA+ES +DY+ RFN + L+VEG TD   L   I+G++
Subjt:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR

Query:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP
        DE+ ++S GK+T  TF +  ++ Q +M VGEL+ ++ +P
Subjt:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]4.1e-1634.53Show/hide
Query:  GARDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR
        G  + +KCR FS TL+G                            +GGR + RP  YLLT++Q+A+ES  DY+ RFN + L+VEG T+  +L   ++ +R
Subjt:  GARDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR

Query:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP
        DE   +S GKKT  TF + +++ Q++M  GE   ++  P
Subjt:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]4.8e-1737.4Show/hide
Query:  RDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDE
        R+ I+CR FS TL G                            +GGR + +P TYLLT++QKA+ES ++Y+ RFN + L+VEG TD  AL   ++G++DE
Subjt:  RDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDE

Query:  KFLWSLGKKTLVTFDDFITKTQRHMHVGELL
        + ++S GK+T  TF + +++ Q++M  GEL+
Subjt:  KFLWSLGKKTLVTFDDFITKTQRHMHVGELL

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.4e-2430.25Show/hide
Query:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR
        G  + ++CR FS TL G   +                         GGR + RP  YLLT++Q+ +ES RDY+ RFN + L+VEG TD  +L   ++G+R
Subjt:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR

Query:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNPGDITRNPE--------------------------------PIKVPIEHILMEIKDQNLLKW
        DE   +S GK+T  TF + +++ QR+M  GE   ++  P     +P+                                P  VPIE +LMEIKDQ LLKW
Subjt:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNPGDITRNPE--------------------------------PIKVPIEHILMEIKDQNLLKW

Query:  PTKRPQGNFSKDPKPN--LLIKGEGDTTLPHKKDC----RLTNSLINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP
        P +R + + +K  K    L  +  G  T    +DC         LI   Y +  V+ P+    G+    P R+ R +   P
Subjt:  PTKRPQGNFSKDPKPN--LLIKGEGDTTLPHKKDC----RLTNSLINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]6.5e-2231.22Show/hide
Query:  LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP------
        +GGR + RP  YLLT++Q+ +ES  DY+ RFN + L++E  TD  +L   ++G+RDE   +S GKKT  TF + +++ QR+M  GE   ++  P      
Subjt:  LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP------

Query:  ------GDITRNPE--------------------PIKVPIEHILMEIKDQNLLKWP-------TKRPQGNFSKDPKPNLLIKGEGDTTLPHKKDCRLTNS
              GD  +                       P  VP+E +LMEIKDQ LLKWP       TKR +G +       L  +     T  +         
Subjt:  ------GDITRNPE--------------------PIKVPIEHILMEIKDQNLLKWP-------TKRPQGNFSKDPKPNLLIKGEGDTTLPHKKDCRLTNS

Query:  LINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP
        LI   Y Q  V+ P+    G+ +  P R+ R +   P
Subjt:  LINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP

TrEMBL top hitse value%identityAlignment
A0A2N9HJ21 Ribonuclease H8.1e-1833.52Show/hide
Query:  GARDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR
        G  DEI CRAF  TL GP                           +G ++  RP T+LL ++QK  E+ R Y+ RFN + L V+G  D   LT  I+GL+
Subjt:  GARDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR

Query:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNPGDITRNP--------EPIKVPIEHILMEIKDQNLLKWPTK
           FL+S+ K    T  + + + QRHM+  E L AR       R           P+  P++HI M+I++   LKWP K
Subjt:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNPGDITRNP--------EPIKVPIEHILMEIKDQNLLKWPTK

A0A6J1D3B7 uncharacterized protein LOC1110166193.6e-1837.41Show/hide
Query:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR
        G  + I+CR FS TL G T +                         GG  + RP  YLLT++QKA+ES +DY+ RFN + L+VEG TD   L   I+G++
Subjt:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR

Query:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP
        DE+ ++S GK+T  TF +  ++ Q +M VGEL+ ++ +P
Subjt:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP

A0A6J1DWY0 uncharacterized protein LOC1110252931.2e-2430.25Show/hide
Query:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR
        G  + ++CR FS TL G   +                         GGR + RP  YLLT++Q+ +ES RDY+ RFN + L+VEG TD  +L   ++G+R
Subjt:  GARDEIKCRAFSLTLAGPTTL-------------------------GGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLR

Query:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNPGDITRNPE--------------------------------PIKVPIEHILMEIKDQNLLKW
        DE   +S GK+T  TF + +++ QR+M  GE   ++  P     +P+                                P  VPIE +LMEIKDQ LLKW
Subjt:  DEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNPGDITRNPE--------------------------------PIKVPIEHILMEIKDQNLLKW

Query:  PTKRPQGNFSKDPKPN--LLIKGEGDTTLPHKKDC----RLTNSLINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP
        P +R + + +K  K    L  +  G  T    +DC         LI   Y +  V+ P+    G+    P R+ R +   P
Subjt:  PTKRPQGNFSKDPKPN--LLIKGEGDTTLPHKKDC----RLTNSLINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP

A0A6J1DYL6 uncharacterized protein LOC1110257853.2e-2231.22Show/hide
Query:  LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP------
        +GGR + RP  YLLT++Q+ +ES  DY+ RFN + L++E  TD  +L   ++G+RDE   +S GKKT  TF + +++ QR+M  GE   ++  P      
Subjt:  LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNP------

Query:  ------GDITRNPE--------------------PIKVPIEHILMEIKDQNLLKWP-------TKRPQGNFSKDPKPNLLIKGEGDTTLPHKKDCRLTNS
              GD  +                       P  VP+E +LMEIKDQ LLKWP       TKR +G +       L  +     T  +         
Subjt:  ------GDITRNPE--------------------PIKVPIEHILMEIKDQNLLKWP-------TKRPQGNFSKDPKPNLLIKGEGDTTLPHKKDCRLTNS

Query:  LINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP
        LI   Y Q  V+ P+    G+ +  P R+ R +   P
Subjt:  LINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIP

A0A6J1DZ49 uncharacterized protein LOC1110248512.3e-1737.4Show/hide
Query:  RDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDE
        R+ I+CR FS TL G                            +GGR + +P TYLLT++QKA+ES ++Y+ RFN + L+VEG TD  AL   ++G++DE
Subjt:  RDEIKCRAFSLTLAGPTT-------------------------LGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDE

Query:  KFLWSLGKKTLVTFDDFITKTQRHMHVGELL
        + ++S GK+T  TF + +++ Q++M  GEL+
Subjt:  KFLWSLGKKTLVTFDDFITKTQRHMHVGELL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAGTACAATTGTGATATTTGAGCCTAACAGTCAACCCACCTCCTATAAATATGGGAGAAGAGCAACCCTTCAAGTTGGCGCTGTCTGTGGGGACGACTGTCAATC
TAATATACTTATGGATCCTGACCATAGCCACCCACCTCAAGAAGGAAATCCAGTCCCAGGACAAGGATACTCACTCGTTCCTTCTCGAAGACCTGGAGGGCTGCAACCCA
GCTTCCAGCACCCTATTCAAGGGGCAAAGGGAGTAAATGAAAATCTTACGATCACAACACACTTTGTGGATGAGTCAGAAGTGCCCCAACGCCGACGAAGTCGGTACACA
CAAATTAATCAAGATTTGCAAGGCTTAAAGGGAGATATGGTCGAGGTATTGGCTCTTCTAAAACAAAAGGAGAATCTTGGAACATGTGCCAGTTCCTCCTTCCACAATCA
CTCTGTTAGAGACCCGGCAAAAGGGAAATCCCCGGTGGAAGTGGAAGATGAATCACAGGTAAATCGTCCTCCAAATCCACCTAAGAAATTAATCCTAGAGGGAAACAATC
GATTAAGAGATCCCCCAAAGAGTATCAACTCTCCCAAATCTTGTCTCCCTGGCAAGCGAAGGGGTCATCCGGGGGCTCGAGATGAAATCAAGTGCCGAGCATTTTCATTA
ACCCTCGCTGGTCCGACCACACTTGGAGGACGCAAGCAGAAAAGACCAGCCACATACTTGTTAACAGTTCGGCAAAAAGCCAGCGAGAGCCCTCGTGACTACATAGTCCG
TTTTAACAATAAAGCCTTGAAGGTGGAAGGAGGAACTGATGGAACCGCTCTGACCACTATCATCGCAGGACTGCGGGATGAGAAATTCCTATGGTCATTAGGAAAAAAGA
CGCTAGTCACCTTTGATGACTTTATCACCAAAACTCAGCGACACATGCATGTTGGAGAGTTACTTAGTGCCCGCAGTAATCCAGGAGACATCACTCGTAATCCTGAACCC
ATAAAAGTACCAATTGAGCATATTCTTATGGAAATTAAAGATCAAAATCTGCTGAAATGGCCTACCAAGAGGCCACAAGGGAATTTTTCCAAGGACCCCAAGCCGAATTT
GTTGATAAAAGGGGAAGGGGATACCACCCTCCCCCACAAGAAGGATTGCAGGTTGACAAACAGCCTGATCAACGAGAGATACGAACAATTTTTGGTGGACCTACCGGAGG
AGAATCTAGCCGGAAAAGAAAAGCTCAAACCCGACAGGCAAGGCAGGAACCTTACATCTATACCATTTGTGCCGCCTCCTAGGCATGTTCTGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTAGTACAATTGTGATATTTGAGCCTAACAGTCAACCCACCTCCTATAAATATGGGAGAAGAGCAACCCTTCAAGTTGGCGCTGTCTGTGGGGACGACTGTCAATC
TAATATACTTATGGATCCTGACCATAGCCACCCACCTCAAGAAGGAAATCCAGTCCCAGGACAAGGATACTCACTCGTTCCTTCTCGAAGACCTGGAGGGCTGCAACCCA
GCTTCCAGCACCCTATTCAAGGGGCAAAGGGAGTAAATGAAAATCTTACGATCACAACACACTTTGTGGATGAGTCAGAAGTGCCCCAACGCCGACGAAGTCGGTACACA
CAAATTAATCAAGATTTGCAAGGCTTAAAGGGAGATATGGTCGAGGTATTGGCTCTTCTAAAACAAAAGGAGAATCTTGGAACATGTGCCAGTTCCTCCTTCCACAATCA
CTCTGTTAGAGACCCGGCAAAAGGGAAATCCCCGGTGGAAGTGGAAGATGAATCACAGGTAAATCGTCCTCCAAATCCACCTAAGAAATTAATCCTAGAGGGAAACAATC
GATTAAGAGATCCCCCAAAGAGTATCAACTCTCCCAAATCTTGTCTCCCTGGCAAGCGAAGGGGTCATCCGGGGGCTCGAGATGAAATCAAGTGCCGAGCATTTTCATTA
ACCCTCGCTGGTCCGACCACACTTGGAGGACGCAAGCAGAAAAGACCAGCCACATACTTGTTAACAGTTCGGCAAAAAGCCAGCGAGAGCCCTCGTGACTACATAGTCCG
TTTTAACAATAAAGCCTTGAAGGTGGAAGGAGGAACTGATGGAACCGCTCTGACCACTATCATCGCAGGACTGCGGGATGAGAAATTCCTATGGTCATTAGGAAAAAAGA
CGCTAGTCACCTTTGATGACTTTATCACCAAAACTCAGCGACACATGCATGTTGGAGAGTTACTTAGTGCCCGCAGTAATCCAGGAGACATCACTCGTAATCCTGAACCC
ATAAAAGTACCAATTGAGCATATTCTTATGGAAATTAAAGATCAAAATCTGCTGAAATGGCCTACCAAGAGGCCACAAGGGAATTTTTCCAAGGACCCCAAGCCGAATTT
GTTGATAAAAGGGGAAGGGGATACCACCCTCCCCCACAAGAAGGATTGCAGGTTGACAAACAGCCTGATCAACGAGAGATACGAACAATTTTTGGTGGACCTACCGGAGG
AGAATCTAGCCGGAAAAGAAAAGCTCAAACCCGACAGGCAAGGCAGGAACCTTACATCTATACCATTTGTGCCGCCTCCTAGGCATGTTCTGAAATAA
Protein sequenceShow/hide protein sequence
MRSTIVIFEPNSQPTSYKYGRRATLQVGAVCGDDCQSNILMDPDHSHPPQEGNPVPGQGYSLVPSRRPGGLQPSFQHPIQGAKGVNENLTITTHFVDESEVPQRRRSRYT
QINQDLQGLKGDMVEVLALLKQKENLGTCASSSFHNHSVRDPAKGKSPVEVEDESQVNRPPNPPKKLILEGNNRLRDPPKSINSPKSCLPGKRRGHPGARDEIKCRAFSL
TLAGPTTLGGRKQKRPATYLLTVRQKASESPRDYIVRFNNKALKVEGGTDGTALTTIIAGLRDEKFLWSLGKKTLVTFDDFITKTQRHMHVGELLSARSNPGDITRNPEP
IKVPIEHILMEIKDQNLLKWPTKRPQGNFSKDPKPNLLIKGEGDTTLPHKKDCRLTNSLINERYEQFLVDLPEENLAGKEKLKPDRQGRNLTSIPFVPPPRHVLK