CuGenDBv2

Gene ID	Moc03g24290
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	ribonuclease H2 subunit C
Genome location	chr3:17291373..17293976
RNA-Seq Expression	Moc03g24290
Synteny	Moc03g24290
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-71

82.53

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+ENER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

XP_022142418.1 ribonuclease H2 subunit C [Momordica charantia]

2.6e-88

100

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
Subjt:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

1.4e-70

81.93

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

5.4e-70

81.33

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSV+ AYFRGRKLQGATISLPEGY G+V+GRK L KRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA ASTA K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

1.9e-70

81.93

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        M+AENER+ EVIVD D   DS A+DLSGKVHQLPC +K DGPCSVS YFKPK TGIE DGLSVEEAYFRGRKLQGATISLPEGYSG+VLG+K LGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQ Q+S  W+VKAKF NITYWNH TLPSQDD F+RSFHWLTVAQALH+PVTAEDLASASTA K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9A8 uncharacterized protein C12B10.15c

2.5e-65

74.4

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Query:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK
        M+A+N R+ E  V  D D G D +A+DLSGK+HQLPCT+K DGPC VSHYFKPK TGIEVDGL+VEEAYFRGRKLQGATISLPEGYSG+VLG+K LGK K
Subjt:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK

Query:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        +S+Q  DS  W+VKAKF NITYWNH TLPSQDD F+R+FHWLTVAQALH+PVTAEDLASAS A  ++S
Subjt:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

2.5e-65

74.4

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Query:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK
        M+A+N R+ E  V  D D G D +A+DLSGK+HQLPCT+K DGPC VSHYFKPK TGIEVDGL+VEEAYFRGRKLQGATISLPEGYSG+VLG+K LGK K
Subjt:  MDAENERQREVIV--DLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK

Query:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        +S+Q  DS  W+VKAKF NITYWNH TLPSQDD F+R+FHWLTVAQALH+PVTAEDLASAS A  ++S
Subjt:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

A0A6J1CLH6 ribonuclease H2 subunit C

1.3e-88

100

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
Subjt:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

A0A6J1EN41 uncharacterized protein C12B10.15c

6.9e-71

81.93

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

A0A6J1KH29 uncharacterized protein C12B10.15c

2.6e-70

81.33

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Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSV+ AYFRGRKLQGATISLPEGY G+V+GRK L KRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA ASTA K+MS
Subjt:  EQSQD--SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

3.0e-07

31.36

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Query:  KVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-FVLGRKDLGKRKASEQS--QDSWEVKAKFGNITYWNHSTL-
        K   LPC +  DGP  V  YF  K   I  +  S      RGR+L G  + LPE Y+G  VL    L   + SE+   + +W + + F  +  WN   + 
Subjt:  KVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-FVLGRKDLGKRKASEQS--QDSWEVKAKFGNITYWNHSTL-

Query:  PSQDDMFRRS-FHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDMFRRS-FHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

4.2e-09

29.93

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Query:  VHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFV---------LGRKD-LGKRKASEQSQDSWE--------VKA
        +H LPC V +DGP  V  +F P        G    E  FRGR L+G  +++P G  G+V         +G+ D L      +Q ++  E          A
Subjt:  VHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFV---------LGRKD-LGKRKASEQSQDSWE--------VKA

Query:  KFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPV
         F   T W   T+P  D   R +  W ++A A+H  V
Subjt:  KFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

5.6e-49

60.4

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Query:  DSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKD----LGKRKASEQSQDS--WEVKAKF
        ++  VDLS +VHQLPC ++ DGP  VSHYFKPK + +E+DG+  EEA+FRGRKLQGATISLP GYSGFVL +       GKRKAS  ++D+  WEVKAKF
Subjt:  DSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKD----LGKRKASEQSQDS--WEVKAKF

Query:  GNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKS
         N+TYWNH +LPS+DD F RSFHW ++A+ALH+PV  EDL + S   K+
Subjt:  GNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKS

Sequences

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CDS sequence

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ATGGATGCGGAAAACGAGAGGCAAAGGGAAGTAATTGTGGATCTTGATCTTGGGAGGGACTCGGAAGCTGTCGACCTCAGCGGCAAAGTTCATCAGCTTCCCTGT
ACCGTTAAACTCGATGGTCCTTGCTCTGTTTCTCACTATTTCAAACCCAAATTCACTGGAATCGAGGTTGACGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGA
AGAAAGTTGCAAGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTTTGTGCTAGGGAGGAAAGATCTTGGAAAGCGAAAAGCTTCTGAACAGTCTCAGGAC
TCTTGGGAGGTGAAGGCCAAATTTGGAAACATAACATATTGGAACCACAGCACCCTGCCTTCACAAGATGATATGTTTCGGCGTTCTTTTCACTGGCTTACCGTT
GCACAAGCATTGCACCAACCGGTGACAGCAGAAGATCTGGCATCTGCATCTACTGCTCACAAGAGCATGAGTTGA

mRNA sequence

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Protein sequence

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MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKASEQSQD
SWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS

Moc03g24290 (gene) of Bitter gourd (OHB3-1) v2 genome