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Moc03g24930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g24930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:17922143..17923257
RNA-Seq ExpressionMoc03g24930
SyntenyMoc03g24930
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8686631.1 Piezo-type mechanosensitive ion channel-like protein [Hibiscus syriacus]9.3e-0531.76Show/hide
Query:  MTDMERVEMDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER-------------------LSNLLGNESLKFS
        M D +   +D Q + +IRL LS NV+  +A + TT  LM  L+  YEK  A++KV+L+ R FN+ M                     +S+  GN  LKF 
Subjt:  MTDMERVEMDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER-------------------LSNLLGNESLKFS

Query:  EMCDAEIAEEIRGKGNGKNSASTSGGENSMDAAAPSFSSMARLQVRIG
        ++ D  ++EEIR + +G+ S S++    S    +   S+  R + R G
Subjt:  EMCDAEIAEEIRGKGNGKNSASTSGGENSMDAAAPSFSSMARLQVRIG

RVW36426.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.4e-0635.77Show/hide
Query:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER--------------------------LSNLLGNESLKFSE
        +D QV+ +IRL LS  V+  V  + TT  LMK L+D YEK  AN+KV+L+ + FN+ M +                          +SN  G E LK+++
Subjt:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER--------------------------LSNLLGNESLKFSE

Query:  MCDAEIAEEIRGKGNGKNSASTS
        + D  +AEEIR +  G+ S S S
Subjt:  MCDAEIAEEIRGKGNGKNSASTS

RVW72813.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.0e-0739.81Show/hide
Query:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMERL----------SNLLGNESLKFSEMCDAEIAEEIRGKGNG
        +D QV+ +IRL LS +V+  +  + TT  LMK L+  YEKL+ N+KV+L+ ++FN  M  +          SN  G E LK++++ D  +AEEIR K  G
Subjt:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMERL----------SNLLGNESLKFSEMCDAEIAEEIRGKGNG

Query:  KNS
        + S
Subjt:  KNS

RVW76343.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.6e-0740.38Show/hide
Query:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER-------LSNLLGNESLKFSEMCDAEIAEEIRGKGNGKNS
        +D QV+ +IRL LS +V+  V  + TT  LMK  +  YEK  AN+KV+L+ + FN+ M         +SN  G E LK++++ D  +AEEIR +  G+ S
Subjt:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER-------LSNLLGNESLKFSEMCDAEIAEEIRGKGNGKNS

Query:  ASTS
         S+S
Subjt:  ASTS

XP_028220274.1 uncharacterized protein LOC114401894 [Glycine soja]3.4e-0737.74Show/hide
Query:  DMERVE---MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMERLSNLLGNESLKFSEMCDAEIAEEIRGKGNGK
        DM++ E   +D Q + +IRL L+ NV+  + ++ TT  LMK L+D YEK  A +KVYL+ R FN+ M  +S+     +LK S++ D  ++E++R + +G+
Subjt:  DMERVE---MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMERLSNLLGNESLKFSEMCDAEIAEEIRGKGNGK

Query:  NSASTS
        +S+  S
Subjt:  NSASTS

TrEMBL top hitse value%identityAlignment
A0A438DLV5 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-0635.77Show/hide
Query:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER--------------------------LSNLLGNESLKFSE
        +D QV+ +IRL LS  V+  V  + TT  LMK L+D YEK  AN+KV+L+ + FN+ M +                          +SN  G E LK+++
Subjt:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER--------------------------LSNLLGNESLKFSE

Query:  MCDAEIAEEIRGKGNGKNSASTS
        + D  +AEEIR +  G+ S S S
Subjt:  MCDAEIAEEIRGKGNGKNSASTS

A0A438GKS0 Retrovirus-related Pol polyprotein from transposon TNT 1-949.7e-0839.81Show/hide
Query:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMERL----------SNLLGNESLKFSEMCDAEIAEEIRGKGNG
        +D QV+ +IRL LS +V+  +  + TT  LMK L+  YEKL+ N+KV+L+ ++FN  M  +          SN  G E LK++++ D  +AEEIR K  G
Subjt:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMERL----------SNLLGNESLKFSEMCDAEIAEEIRGKGNG

Query:  KNS
        + S
Subjt:  KNS

A0A438GVW5 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-0740.38Show/hide
Query:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER-------LSNLLGNESLKFSEMCDAEIAEEIRGKGNGKNS
        +D QV+ +IRL LS +V+  V  + TT  LMK  +  YEK  AN+KV+L+ + FN+ M         +SN  G E LK++++ D  +AEEIR +  G+ S
Subjt:  MDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER-------LSNLLGNESLKFSEMCDAEIAEEIRGKGNGKNS

Query:  ASTS
         S+S
Subjt:  ASTS

A0A803L407 Uncharacterized protein5.7e-0837.72Show/hide
Query:  MTDMERVEMDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER----------LSNLLGNESLKFSEMCDAEIAE
        M + E   +D Q + +IRL LS NV+  +A +TTT  LMK L++ YEK  A++KV+L+ R F++ M +          +S+  GN  LKF ++ D  ++E
Subjt:  MTDMERVEMDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER----------LSNLLGNESLKFSEMCDAEIAE

Query:  EIRGKGNGKNSAST
        EIR + +G++S+S+
Subjt:  EIRGKGNGKNSAST

A0A803L6Q2 Uncharacterized protein1.7e-0738.05Show/hide
Query:  MTDMERVEMDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER---------LSNLLGNESLKFSEMCDAEIAEE
        M + E   +D Q + +IRL LS NV+  +A +TTT  LMK L++ YEK  A++KV+L+ R F++ M           +S+  GN  LKF +  D  ++EE
Subjt:  MTDMERVEMDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMER---------LSNLLGNESLKFSEMCDAEIAEE

Query:  IRGKGNGKNSAST
        IR + +G++S+S+
Subjt:  IRGKGNGKNSAST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGACATGGAACGGGTGGAGATGGACGAACAAGTCATAACAATCATCAGGTTGTGCTTGTCAATGAACGTGTCAAGTCTCGTGGCGAGTCAGACAACGACGATGAG
ACTTATGAAGACCCTGACAGACAGATATGAAAAACTCTATGCCAACAGCAAAGTGTATCTTATTATGAGATACTTCAACATTCATATGGAACGACTATCGAATTTGTTGG
GAAATGAAAGTCTGAAGTTTTCAGAAATGTGTGATGCTGAAATTGCTGAAGAGATTCGTGGGAAAGGAAATGGGAAGAACTCTGCATCCACTTCTGGTGGGGAGAACTCT
ATGGACGCTGCAGCGCCATCATTTAGCTCCATGGCGCGCCTGCAGGTCAGAATTGGTAGCAAAATCCCAAAGGAGCGCCGCAGCGCTAGTACACAGCGCCATGGCACCCT
GCAGATGAAACTTGGGCCTTTTTCCGCGATGACAGCGCCGCAGCACTGTATAGTAGCGCCATGCCGCTACGAACTTGCACGTCCGTCACAAATCTGGGACGGCTCCATGG
CGCTCACTAATGGCGCCATGGCGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGACATGGAACGGGTGGAGATGGACGAACAAGTCATAACAATCATCAGGTTGTGCTTGTCAATGAACGTGTCAAGTCTCGTGGCGAGTCAGACAACGACGATGAG
ACTTATGAAGACCCTGACAGACAGATATGAAAAACTCTATGCCAACAGCAAAGTGTATCTTATTATGAGATACTTCAACATTCATATGGAACGACTATCGAATTTGTTGG
GAAATGAAAGTCTGAAGTTTTCAGAAATGTGTGATGCTGAAATTGCTGAAGAGATTCGTGGGAAAGGAAATGGGAAGAACTCTGCATCCACTTCTGGTGGGGAGAACTCT
ATGGACGCTGCAGCGCCATCATTTAGCTCCATGGCGCGCCTGCAGGTCAGAATTGGTAGCAAAATCCCAAAGGAGCGCCGCAGCGCTAGTACACAGCGCCATGGCACCCT
GCAGATGAAACTTGGGCCTTTTTCCGCGATGACAGCGCCGCAGCACTGTATAGTAGCGCCATGCCGCTACGAACTTGCACGTCCGTCACAAATCTGGGACGGCTCCATGG
CGCTCACTAATGGCGCCATGGCGCTGTAG
Protein sequenceShow/hide protein sequence
MTDMERVEMDEQVITIIRLCLSMNVSSLVASQTTTMRLMKTLTDRYEKLYANSKVYLIMRYFNIHMERLSNLLGNESLKFSEMCDAEIAEEIRGKGNGKNSASTSGGENS
MDAAAPSFSSMARLQVRIGSKIPKERRSASTQRHGTLQMKLGPFSAMTAPQHCIVAPCRYELARPSQIWDGSMALTNGAMAL