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Moc03g27190 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g27190
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein LOL2
Genome locationchr3:19565435..19567560
RNA-Seq ExpressionMoc03g27190
SyntenyMoc03g27190
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]5.0e-5886.26Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        M+  EI+ DEDDGPPPGWEPITP  P PPPP LSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT+VTEIGVHNRRPPWSV QGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_022140183.1 protein LOL2 [Momordica charantia]1.3e-69100Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]4.1e-6089.31Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPP P PPP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_023001758.1 protein LOL2 [Cucurbita maxima]3.4e-5988.55Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPP P  PP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_038893782.1 protein LOL2 isoform X1 [Benincasa hispida]1.7e-5885.82Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPIT---PPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVR
        M+  EI+ D+DDGPPPGWEPIT   PPPPPPPPPPLSSDMAQMVCG+CRRLLKYLKGA YV+CSCCSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVR
Subjt:  MEFQEIDNDEDDGPPPGWEPIT---PPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVR

Query:  CSSCTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CSSCT+VTEIGVHNRRPPWSVQQGQA  PTN VQ
Subjt:  CSSCTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein2.4e-5886.26Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        M+  EI+ DEDDGPPPGWEPITP  P PPPP LSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT+VTEIGVHNRRPPWSV QGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A5A7UQS3 Protein LOL2 isoform X43.8e-5684.73Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        M+  EI+ DEDDGPPPGWEPITP  P PP P LS DMAQMVCG+CRRLLKYLKGARYV+CS CSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT+VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A6J1CHF4 protein LOL26.1e-70100Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A6J1EMN3 protein LOL22.0e-6089.31Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPP P PPP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A6J1KRG9 protein LOL21.7e-5988.55Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPP P  PP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL24.0e-3457.48Show/hide
Query:  QEIDNDEDDGPPPGWEPITPPPP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS
        +E + +E++GPPPGWE    PPP         P P      + AQMVCGSCRRLL YL+G+++V+CS C TVN VLEA +VGQV C +C LLLMYPYGA 
Subjt:  QEIDNDEDDGPPPGWEPITPPPP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS

Query:  SVRCSSCTNVTEIGVHNRRPPWSVQQG
        +VRCSSC +VT+I  +N+RPPWS QQG
Subjt:  SVRCSSCTNVTEIGVHNRRPPWSVQQG

P94077 Protein LSD12.5e-2046.43Show/hide
Query:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS
        PPPPPP   DMA ++CG CR +L Y +GA  VRCSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS

Query:  VQQ--GQATPPT
          +  G A PP+
Subjt:  VQQ--GQATPPT

Q0J7V9 Protein LSD17.3e-2053.85Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        P   ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  +EA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

Q704V3 Protein LOL58.0e-2753.45Show/hide
Query:  PGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPP
        P  +   P  PPPP P L+ ++ QMVCGSCR LL Y +GA YV C+CC T+NYVLEA EVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R  
Subjt:  PGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPP

Query:  WSVQQGQATPPTNVVQ
         S++Q   T  + + +
Subjt:  WSVQQGQATPPTNVVQ

Q93ZB1 Protein LOL15.0e-2156.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 13.6e-2256.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

AT1G32540.2 lsd one like 13.6e-2256.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

AT1G32540.3 lsd one like 13.6e-2256.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

AT4G20380.2 LSD1 zinc finger family protein1.8e-2146.43Show/hide
Query:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS
        PPPPPP   DMA ++CG CR +L Y +GA  VRCSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS

Query:  VQQ--GQATPPT
          +  G A PP+
Subjt:  VQQ--GQATPPT

AT4G21610.1 lsd one like 22.8e-3557.48Show/hide
Query:  QEIDNDEDDGPPPGWEPITPPPP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS
        +E + +E++GPPPGWE    PPP         P P      + AQMVCGSCRRLL YL+G+++V+CS C TVN VLEA +VGQV C +C LLLMYPYGA 
Subjt:  QEIDNDEDDGPPPGWEPITPPPP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS

Query:  SVRCSSCTNVTEIGVHNRRPPWSVQQG
        +VRCSSC +VT+I  +N+RPPWS QQG
Subjt:  SVRCSSCTNVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCCAGGAAATCGACAATGACGAAGATGACGGACCTCCTCCCGGATGGGAACCTATCACTCCGCCGCCGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCGGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCACAGG
AGGTTGGACAAGTTAAATGTGGTTCCTGTGCATTGTTGCTGATGTACCCATATGGAGCATCATCAGTTAGGTGTTCGTCGTGTACCAATGTAACAGAAATTGGGGTGCAT
AACAGACGCCCACCGTGGTCTGTCCAGCAGGGACAAGCAACCCCTCCTACCAACGTTGTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCCAGGAAATCGACAATGACGAAGATGACGGACCTCCTCCCGGATGGGAACCTATCACTCCGCCGCCGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCGGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCACAGG
AGGTTGGACAAGTTAAATGTGGTTCCTGTGCATTGTTGCTGATGTACCCATATGGAGCATCATCAGTTAGGTGTTCGTCGTGTACCAATGTAACAGAAATTGGGGTGCAT
AACAGACGCCCACCGTGGTCTGTCCAGCAGGGACAAGCAACCCCTCCTACCAACGTTGTCCAGTAG
Protein sequenceShow/hide protein sequence
MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVH
NRRPPWSVQQGQATPPTNVVQ