; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g27200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g27200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA ligase 1
Genome locationchr3:19569304..19571224
RNA-Seq ExpressionMoc03g27200
SyntenyMoc03g27200
Gene Ontology termsGO:0007131 - reciprocal meiotic recombination (biological process)
GO:0099086 - synaptonemal structure (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146600.1 DNA ligase 1 isoform X1 [Cucumis sativus]3.4e-9690.28Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGNIKIPTAKTR+RKRVSD DL+SSDQRK+T +DIDLDLDLSDDLKGIVSALNQI+E+A KDD KKNEETISSV++E+RTMIEEVKSK EKDRQ+FAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFL+TGSDEDFPA+D
Subjt:  GSFLETGSDEDFPAED

XP_022140180.1 DNA ligase 1 [Momordica charantia]9.5e-107100Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFLETGSDEDFPAED
Subjt:  GSFLETGSDEDFPAED

XP_022927498.1 DNA ligase 1 [Cucurbita moschata]8.1e-9892.13Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+KIP AKTRTRKRVSD DLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQKDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFLETGSDEDF A+D
Subjt:  GSFLETGSDEDFPAED

XP_023001751.1 DNA ligase 1 [Cucurbita maxima]3.3e-9992.59Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+KIP AKTRTRKRVSDPDLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQKDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFLETGSDEDFP +D
Subjt:  GSFLETGSDEDFPAED

XP_023520366.1 DNA ligase 1 [Cucurbita pepo subsp. pepo]8.9e-9791.2Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+KIP AKTRTRKRVS+ DLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQKDDQKKNEETISSVS+EIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFLETGSDEDF A+D
Subjt:  GSFLETGSDEDFPAED

TrEMBL top hitse value%identityAlignment
A0A0A0LRW7 Uncharacterized protein1.6e-9690.28Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGNIKIPTAKTR+RKRVSD DL+SSDQRK+T +DIDLDLDLSDDLKGIVSALNQI+E+A KDD KKNEETISSV++E+RTMIEEVKSK EKDRQ+FAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFL+TGSDEDFPA+D
Subjt:  GSFLETGSDEDFPAED

A0A5D3DS94 DNA ligase 1 isoform X13.1e-9589.81Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        M NIKIPTAKTR+RKRVSD DLTSS+QR RT +DIDLDLDLSDDLKGIVSALNQI+E+A KDD KKNEETISSV++E+RTMIEEVKSK EKDRQ+FAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFL+TGSDEDFPA+D
Subjt:  GSFLETGSDEDFPAED

A0A6J1CEE2 DNA ligase 14.6e-107100Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFLETGSDEDFPAED
Subjt:  GSFLETGSDEDFPAED

A0A6J1EL64 DNA ligase 13.9e-9892.13Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+KIP AKTRTRKRVSD DLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQKDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFLETGSDEDF A+D
Subjt:  GSFLETGSDEDFPAED

A0A6J1KJH3 DNA ligase 11.6e-9992.59Show/hide
Query:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+KIP AKTRTRKRVSDPDLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQKDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPAED
        GSFLETGSDEDFP +D
Subjt:  GSFLETGSDEDFPAED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G33793.1 unknown protein1.3e-6167.03Show/hide
Query:  DLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHLQA
        +LD+D+S D KGI+SAL Q REKA +D +KK EE+ISSVS+E+++ I+E+KSK EK+RQ+F+KALSKSSKECEN LKDE AKF+ LH+KF K++A HLQ 
Subjt:  DLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHLQA

Query:  IKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTLGSFLET-GSDEDFPAED
        +KDTISKFEE+KERL+ +YEQLRK+E+ +I+EQEK C +K+AQLEESLK+KK+ DKTFS+LRKTLGSFLE   SDE+FP ++
Subjt:  IKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTLGSFLET-GSDEDFPAED

AT2G46980.2 unknown protein8.6e-0527.63Show/hide
Query:  DIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHL
        D D D  L   +     AL     K +   +KK+ E I+SVS EI   +E +KS    +    +       K  E  L+++  K + +HEKF  + + HL
Subjt:  DIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHL

Query:  QAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKR
        +  K TI + E  +  L    ++ R   + LI+  E     K   L+++ KR
Subjt:  QAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKR

AT2G46980.3 unknown protein8.6e-0527.63Show/hide
Query:  DIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHL
        D D D  L   +     AL     K +   +KK+ E I+SVS EI   +E +KS    +    +       K  E  L+++  K + +HEKF  + + HL
Subjt:  DIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHL

Query:  QAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKR
        +  K TI + E  +  L    ++ R   + LI+  E     K   L+++ KR
Subjt:  QAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATT
GACCTCGATCTCGACCTTTCCGACGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACT
ATCTCAAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAA
GAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGATACCATT
TCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAA
ATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAG
GACTTCCCAGCGGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATT
GACCTCGATCTCGACCTTTCCGACGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACT
ATCTCAAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAA
GAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGATACCATT
TCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAA
ATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAG
GACTTCCCAGCGGAAGATTGA
Protein sequenceShow/hide protein sequence
MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSK
ECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTLGSFLETGSDE
DFPAED