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Moc03g27720 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g27720
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr3:19924958..19927877
RNA-Seq ExpressionMoc03g27720
SyntenyMoc03g27720
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056936.1 putative ribonuclease H protein [Cucumis melo var. makuwa]9.4e-7779.78Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL
        L ARQ H +   IPVAW RPEIGWTKLNFDGSSKG K+PG  SIGGVLRDH+AQFLLGYAE IGRANSA+AEL+AL KGLELV+ENGWKDVWVEGD KGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        VEI+ +N+EVKCVE RS FRYI S+ILDLDNC VSH+YREGNKVA  FASIGHRYKKLEIWR++PPL+TL+MMR DAE
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

KAE8652698.1 hypothetical protein Csa_013405 [Cucumis sativus]1.4e-7276.4Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL
        L AR+ H     IPVAWTRPE GWTKLNFDGSSKG+  PG  SIGGVLRDH+AQFLLGYAE IGRA S++AEL AL KGLELV+ENGWKDVWVEGDAKGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        VEI+ ENREVKC+EARS  R+I S++LD DNC VSH+YREGNKVA  FASIGHR KKLEIWR++PPL+TL+MMR DAE
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

KAG5516709.1 hypothetical protein RHGRI_037449 [Rhododendron griersonianum]8.6e-6258.67Show/hide
Query:  MFSLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLEL
        M ++ NI+RC     +  R  + R WH E I VAW +PEIGWTKLNFDGS KGK   G+ SIGGV R+H+A+FLLGYAE IGR  S +AEL+AL +GLEL
Subjt:  MFSLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLEL

Query:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        V+ENGW+DVW+EGD+K LVEII   + VKC EA+    +IN MI +L+NCM+SHVYREGNK A  FA +GH+ KK ++WR  PP Q L +M  DAE
Subjt:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

KAG6584039.1 putative ribonuclease H protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-8577.16Show/hide
Query:  MFSLNNIVRCGPSKINGIRS-LLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLE
        MFSLN +++C   +IN IR+ LLARQ H + IPVAW RP+IGWTKLNFDGSS+GK SPGR SIGGVLRDH+AQFLLGYAEPIGRANS +AEL+AL KGLE
Subjt:  MFSLNNIVRCGPSKINGIRS-LLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLE

Query:  LVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        LV+ENGWKDVW+EGDAKGL+EIIV  ++ KCVEARS+FRYINS+ILDL+NC VSH+YREGN+VA+ FASIGHRYKKLE+WRDIPPL+TL+MMR+DAE
Subjt:  LVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

XP_038895327.1 uncharacterized protein LOC120083578 [Benincasa hispida]2.7e-7171.43Show/hide
Query:  MFSLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLEL
        MF+L  I++C   +I  IRS LARQWH + IPVAWTRPEIGWTKLNFDGSSKGKK+PGR SIGGVLRDH+AQFLLGYAEPIGRANS +AEL+AL KGLEL
Subjt:  MFSLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLEL

Query:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        V+ENGWKDVWVEGDAKGLVEIIVEN+EVKCVEARS FR                           FASIGHRYKKLEIWR+IPPL+ L+MMRQDAE
Subjt:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

TrEMBL top hitse value%identityAlignment
A0A061GEZ6 Polynucleotidyl transferase5.1e-6057.14Show/hide
Query:  MFSLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLEL
        M + +NI RC     N ++ LL R WH EAIPV+W +PEIGWTKLNFDGS KG+   G+ SIGGV R+H+A+FLLGYAE IGR+ S +AEL+AL +GLEL
Subjt:  MFSLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLEL

Query:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        V+ENGW DVW+EGDAK LV++IV+ R+VKC E +    +IN +I +L+NC+V+H+YREGN+ A   A IGH+ KK +IW  IPP + L ++ +DAE
Subjt:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

A0A0A0LUF5 RNase H domain-containing protein6.8e-7376.4Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL
        L AR+ H     IPVAWTRPE GWTKLNFDGSSKG+  PG  SIGGVLRDH+AQFLLGYAE IGRA S++AEL AL KGLELV+ENGWKDVWVEGDAKGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        VEI+ ENREVKC+EARS  R+I S++LD DNC VSH+YREGNKVA  FASIGHR KKLEIWR++PPL+TL+MMR DAE
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

A0A2N9IF10 RNase H domain-containing protein1.0e-6058.59Show/hide
Query:  MFSLNNIVRCGPSKI--NGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGL
        M S+ NI+RC    I  N +R  L R WH EAIPV W +PEIGWTKLNFDGSSKG+ +  + SIGGV R+H+A+FLLGYAE IG+ANS +AEL+AL +GL
Subjt:  MFSLNNIVRCGPSKI--NGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGL

Query:  ELVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        ELV+ENGW DVW+EGDAK L++IIV+ R VKC+E +     IN ++L+LDN  V+HVYREGN+ A  FA IGH  K   IWR+ PP + L +M++DA+
Subjt:  ELVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

A0A5D3DS33 Putative ribonuclease H protein4.6e-7779.78Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL
        L ARQ H +   IPVAW RPEIGWTKLNFDGSSKG K+PG  SIGGVLRDH+AQFLLGYAE IGRANSA+AEL+AL KGLELV+ENGWKDVWVEGD KGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        VEI+ +N+EVKCVE RS FRYI S+ILDLDNC VSH+YREGNKVA  FASIGHRYKKLEIWR++PPL+TL+MMR DAE
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

A0A7N2LU47 RNase H domain-containing protein3.5e-6158.88Show/hide
Query:  MFSLNNIVRCGPSKINGIR-SLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLE
        M S+ NI+RC       I   +L R WH EAIPV W +PE GWTKLNFDGSSKGK +  + SIGGV R+H+A+F+LGYAE IGRANS +AEL+AL +GLE
Subjt:  MFSLNNIVRCGPSKINGIR-SLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLE

Query:  LVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE
        LV+ENGW DVW+EGDAK L++II + R+VK  E +   R IN +IL+LDNC+V+HVYREGN+ A  FA IGH  +K  IWR++PP + L +M+ DAE
Subjt:  LVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAE

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.9e-0930.94Show/hide
Query:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAK---GLVEIIVENREVK
        + W  P +GW K+N DG+S+G  +PG  S GGVLRD    +  G++  IGR ++  AEL  +  GL    E     V +E D++   G ++  + +    
Subjt:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAK---GLVEIIVENREVK

Query:  CVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFAS
            R    ++    L      + HVYRE N++A   A+
Subjt:  CVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFAS

Arabidopsis top hitse value%identityAlignment
AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-0831.11Show/hide
Query:  WTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIG--RANSAVAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCVE
        WT P IGWTK N+DG+     S      G +LRD    F LG A  IG    N   +EL AL   ++     G++ ++ EGD K + EI+  N       
Subjt:  WTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIG--RANSAVAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCVE

Query:  ARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA
          +  R I++     + C  +   R  N  A + A
Subjt:  ARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA

AT2G46460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0928.68Show/hide
Query:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFL-LGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCV
        + WTRP  GW K N+DG S  ++ P +   G ++RD   QF+  G A     +N+  +E  AL   ++    +G + +W EGD + ++EI+  NR     
Subjt:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFL-LGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCV

Query:  EARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA
        +  +  R + +       C  + + R+ NK A   A
Subjt:  EARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.2e-0730.71Show/hide
Query:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL---VEIIVENREVKCVEARSRFRYIN
        + FDG+SKG  +PG+   G VLR  +   L    E +G A + VAE  AL  GL   ++ G+K+V V GD+  +   V+   +    K  E   + + + 
Subjt:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL---VEIIVENREVKCVEARSRFRYIN

Query:  SMILDLDNCMVSHVYREGNKVAHSFAS
        +     D   + H+ RE N  A   A+
Subjt:  SMILDLDNCMVSHVYREGNKVAHSFAS

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.2e-0730.71Show/hide
Query:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL---VEIIVENREVKCVEARSRFRYIN
        + FDG+SKG  +PG+   G VLR  +   L    E +G A + VAE  AL  GL   ++ G+K+V V GD+  +   V+   +    K  E   + + + 
Subjt:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGL---VEIIVENREVKCVEARSRFRYIN

Query:  SMILDLDNCMVSHVYREGNKVAHSFAS
        +     D   + H+ RE N  A   A+
Subjt:  SMILDLDNCMVSHVYREGNKVAHSFAS

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0939.08Show/hide
Query:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGLV
        + W  P +GW K+N DG+S+G  +PG  S GGVLRD E  +  G++  IGR ++  AEL  +  GL    E     V +E D++ +V
Subjt:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVWVEGDAKGLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCACTAAACAACATTGTAAGATGTGGCCCCTCCAAAATTAACGGAATCCGATCATTACTAGCGAGGCAATGGCACAATGAAGCAATTCCAGTTGCGTGGACAAG
GCCCGAAATTGGATGGACAAAGCTGAATTTTGATGGGTCTTCCAAAGGGAAAAAATCACCAGGCAGAGGCAGCATTGGAGGCGTCCTGAGAGACCACGAGGCGCAGTTTC
TGCTTGGATATGCAGAGCCCATCGGGCGAGCCAACAGCGCCGTGGCCGAACTCAGTGCCCTCGAAAAAGGGCTGGAATTGGTGATTGAAAATGGGTGGAAAGACGTTTGG
GTTGAGGGAGATGCGAAGGGGTTGGTGGAAATAATAGTTGAAAACAGAGAGGTCAAATGCGTGGAAGCTCGAAGCCGTTTTCGGTACATAAATTCTATGATTCTGGATTT
GGATAATTGCATGGTTAGTCATGTTTACAGGGAAGGTAATAAAGTTGCCCACAGCTTTGCTTCCATTGGGCATCGCTATAAGAAGCTTGAAATTTGGAGGGACATTCCCC
CATTGCAGACTTTGGAGATGATGCGTCAAGATGCTGAGGAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCACTAAACAACATTGTAAGATGTGGCCCCTCCAAAATTAACGGAATCCGATCATTACTAGCGAGGCAATGGCACAATGAAGCAATTCCAGTTGCGTGGACAAG
GCCCGAAATTGGATGGACAAAGCTGAATTTTGATGGGTCTTCCAAAGGGAAAAAATCACCAGGCAGAGGCAGCATTGGAGGCGTCCTGAGAGACCACGAGGCGCAGTTTC
TGCTTGGATATGCAGAGCCCATCGGGCGAGCCAACAGCGCCGTGGCCGAACTCAGTGCCCTCGAAAAAGGGCTGGAATTGGTGATTGAAAATGGGTGGAAAGACGTTTGG
GTTGAGGGAGATGCGAAGGGGTTGGTGGAAATAATAGTTGAAAACAGAGAGGTCAAATGCGTGGAAGCTCGAAGCCGTTTTCGGTACATAAATTCTATGATTCTGGATTT
GGATAATTGCATGGTTAGTCATGTTTACAGGGAAGGTAATAAAGTTGCCCACAGCTTTGCTTCCATTGGGCATCGCTATAAGAAGCTTGAAATTTGGAGGGACATTCCCC
CATTGCAGACTTTGGAGATGATGCGTCAAGATGCTGAGGAAATTTGA
Protein sequenceShow/hide protein sequence
MFSLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAVAELSALEKGLELVIENGWKDVW
VEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEEI