; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g28280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g28280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionProtein CLP1 homolog
Genome locationchr3:20293742..20294844
RNA-Seq ExpressionMoc03g28280
SyntenyMoc03g28280
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0051731 - polynucleotide 5'-hydroxyl-kinase activity (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459297.1 PREDICTED: protein CLP1 homolog [Cucumis melo]5.7e-1189.13Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
XP_022134389.1 protein CLP1 homolog [Momordica charantia]4.3e-1189.13Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG P TAAGSGSTSSIRQVKLDRESELRIEVG+DSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
XP_022921936.1 protein CLP1 homolog [Cucurbita moschata]1.6e-1084.78Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
XP_022990827.1 protein CLP1 homolog [Cucurbita maxima]1.6e-1084.78Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
XP_023533688.1 protein CLP1 homolog [Cucurbita pepo subsp. pepo]1.6e-1084.78Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
TrEMBL top hitse value%identityAlignment
A0A1S3C9X9 Protein CLP1 homolog2.7e-1189.13Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
A0A5A7TDF1 Protein CLP1 homolog2.7e-1189.13Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
A0A6J1BYM6 Protein CLP1 homolog2.1e-1189.13Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG P TAAGSGSTSSIRQVKLDRESELRIEVG+DSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
A0A6J1E2R2 Protein CLP1 homolog8.0e-1184.78Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
A0A6J1JJY4 Protein CLP1 homolog8.0e-1184.78Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G04680.1 CLP-similar protein 34.2e-0449.02Show/hide
Query:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG      PA +     +++++QVKL+RESELRIEV S+ PL LR+ +G
Subjt:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
AT3G04680.2 CLP-similar protein 34.2e-0449.02Show/hide
Query:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG
        MAYG      PA +     +++++QVKL+RESELRIEV S+ PL LR+ +G
Subjt:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTC
ACCTCTCTATTTACGTTTATTCTCCGGGGGATATCTGAAAGGAAAAGCTAAGATCTTATGGAGTTGTGCGAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAAGCTTTGC
TTTGGGCTATTTGGAAGGAAAGAAACCAAAGAGCTTTTAGCAATACTTCTATTCCTTTTCCTTGCCTTGAAAGCTTGCCCAAGACTTGGGAGAGGCTATTTCAATCTCGA
GCTGCTGGTATGGTTATCAACACAATGGGATGGATCGAGGAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTC
ACCTCTCTATTTACGTTTATTCTCCGGGGGATATCTGAAAGGAAAAGCTAAGATCTTATGGAGTTGTGCGAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAAGCTTTGC
TTTGGGCTATTTGGAAGGAAAGAAACCAAAGAGCTTTTAGCAATACTTCTATTCCTTTTCCTTGCCTTGAAAGCTTGCCCAAGACTTGGGAGAGGCTATTTCAATCTCGA
GCTGCTGGTATGGTTATCAACACAATGGGATGGATCGAGGAAGCCTAG
Protein sequenceShow/hide protein sequence
MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSGGYLKGKAKILWSCASFALGYLEGKKALLWAIWKERNQRAFSNTSIPFPCLESLPKTWERLFQSR
AAGMVINTMGWIEEA