CuGenDBv2

Gene ID	Moc04g01480
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr4:964921..965373
RNA-Seq Expression	Moc04g01480
Synteny	Moc04g01480
Gene Ontology terms	NA
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]

1.2e-34

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]

1.2e-34

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]

1.2e-34

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

KAA8535282.1 hypothetical protein F0562_030285 [Nyssa sinensis]

1.2e-34

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]

1.2e-34

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

TrEMBL top hits

e value

%identity

Alignment

A0A5J4ZHB6 Uncharacterized protein

5.6e-35

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein

5.6e-35

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

A0A5J5A1U7 Integrase catalytic domain-containing protein

5.6e-35

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

A0A5J5B049 Retrotran_gag_3 domain-containing protein

5.6e-35

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

A0A5J5B4Y2 Retrotran_gag_3 domain-containing protein

5.6e-35

54.86

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Query:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI
        +S +S+S T    Q    SPIFLLS+IC L++ RLDSSNYV W+FQI+ ILKAHSL G+IDG++PCP + ++++        NP++ +WN QD ALMTL+
Subjt:  SSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVP---NPKFILWNAQDHALMTLI

Query:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL
        NATLSQ ALS V+G +TS++ W +LERR+S+STR+ I+ LKS L
Subjt:  NATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.6e-10

26.61

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Query:  RLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVPNPKFILWNAQDHALMTLINATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRAC
        +L S+NY++W  Q+  +   + L GF+DGS   P  ++  D     NP +  W  QD  + + +   +S      V   TT+ Q+W++L + Y++ +   
Subjt:  RLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVPNPKFILWNAQDHALMTLINATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRAC

Query:  IIDLKSDLR
        +  L++ L+
Subjt:  IIDLKSDLR

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.5e-10

28.57

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Query:  RLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVPNPKFILWNAQDHALMTLINATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRAC
        +L S+NY++W  Q+  +   + L GF+DGS P P  ++  D     NP +  W  QD  + + I   +S      V   TT+ Q+W++L + Y++ +   
Subjt:  RLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVPNPKFILWNAQDHALMTLINATLSQKALSLVVGCTTSQQVWKSLERRYSSSTRAC

Query:  IIDLK
        +  L+
Subjt:  IIDLK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATCCTTCGTTTTTCCTTGGTTCTTCAGCGTCTTCATCTTCTGTAACTCAAAAATCAGATCAAGAATTGTCTCATTCTCCGATCTTTCTCCTTTCGCACATCTGTAC
CTTAGTGTCCGTGCGTCTTGATTCATCCAATTATGTTCTTTGGCGTTTCCAAATCACGCCGATTCTGAAAGCTCACTCTCTTTTTGGCTTCATAGATGGATCATTTCCTT
GTCCAGAACGGTCTCTCAAAGAAGACGATAAAATCGTTCCAAATCCGAAATTTATTCTTTGGAACGCTCAAGATCATGCGTTAATGACGCTTATCAATGCTACCTTATCA
CAAAAGGCATTATCCCTTGTCGTTGGATGTACGACTTCTCAACAAGTTTGGAAGTCACTAGAGCGGCGCTATTCTTCTTCAACCAGAGCTTGTATAATCGACCTCAAATC
TGATTTACGGTGA

mRNA sequence

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Protein sequence

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MDPSFFLGSSASSSSVTQKSDQELSHSPIFLLSHICTLVSVRLDSSNYVLWRFQITPILKAHSLFGFIDGSFPCPERSLKEDDKIVPNPKFILWNAQDHALMTLINATLS
QKALSLVVGCTTSQQVWKSLERRYSSSTRACIIDLKSDLR

Moc04g01480 (gene) of Bitter gourd (OHB3-1) v2 genome