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Moc04g04460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g04460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr4:2882330..2883716
RNA-Seq ExpressionMoc04g04460
SyntenyMoc04g04460
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4399153.1 hypothetical protein G4B88_023747 [Cannabis sativa]4.9e-0530.65Show/hide
Query:  MAGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRA
        +AG  + Q  C ++  EA AILE LK    +    A + IE++SDC ++V+ I     +L+ VS I+  I   ++S       H+ R  N  AH +AR+ 
Subjt:  MAGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRA

Query:  CEEGFSSSWNQFCPTWLSALLAAD
             +  +    P WL+    AD
Subjt:  CEEGFSSSWNQFCPTWLSALLAAD

PRQ37402.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]4.9e-0533.94Show/hide
Query:  ALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRACEEGFSSSWNQFCP
        A+EALA+ EGL+  S+ L +     +EVE D L ++N ++++  +LT +  ++E +   ++      +KH+ +KAN VAH +AR A +   S    +  P
Subjt:  ALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRACEEGFSSSWNQFCP

Query:  TWLSALLAA
         WLS L+ A
Subjt:  TWLSALLAA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.1e-0836.63Show/hide
Query:  AGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC
        A C  ++ +  I  LE +AI EGL+A+ Q    E    I +ESD LE ++++++   + T +  ++E+IW+ ++ + I   +H++R+AN VAHG+ARRA 
Subjt:  AGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC

Query:  E
        E
Subjt:  E

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]8.4e-2991.14Show/hide
Query:  EGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC
        E LKALSQSLTLEAGIKIE+ESDCLEVVNIINKSSM LT VSLIVEDIWKE+ESLPIEGFKHL  KANGVAHGIARRAC
Subjt:  EGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-0735.24Show/hide
Query:  AGCFHLQRKCPIKALEALAILEGLKALSQS----LTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIA
        A C  ++ +  I  LE +AI EGL+A+ Q     +  E    I +ESD LE ++++++   + T +  ++E+IW+ +E + I   +H++R+AN VAH +A
Subjt:  AGCFHLQRKCPIKALEALAILEGLKALSQS----LTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIA

Query:  RRACE
        RRA E
Subjt:  RRACE

TrEMBL top hitse value%identityAlignment
A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein2.4e-0533.94Show/hide
Query:  ALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRACEEGFSSSWNQFCP
        A+EALA+ EGL+  S+ L +     +EVE D L ++N ++++  +LT +  ++E +   ++      +KH+ +KAN VAH +AR A +   S    +  P
Subjt:  ALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRACEEGFSSSWNQFCP

Query:  TWLSALLAA
         WLS L+ A
Subjt:  TWLSALLAA

A0A6J1CP26 uncharacterized protein LOC1110134121.0e-0836.63Show/hide
Query:  AGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC
        A C  ++ +  I  LE +AI EGL+A+ Q    E    I +ESD LE ++++++   + T +  ++E+IW+ ++ + I   +H++R+AN VAHG+ARRA 
Subjt:  AGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC

Query:  E
        E
Subjt:  E

A0A6J1D4B6 uncharacterized protein LOC1110171814.1e-2991.14Show/hide
Query:  EGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC
        E LKALSQSLTLEAGIKIE+ESDCLEVVNIINKSSM LT VSLIVEDIWKE+ESLPIEGFKHL  KANGVAHGIARRAC
Subjt:  EGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRAC

A0A6J1DSV1 uncharacterized protein LOC1110236085.2e-0835.24Show/hide
Query:  AGCFHLQRKCPIKALEALAILEGLKALSQS----LTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIA
        A C  ++ +  I  LE +AI EGL+A+ Q     +  E    I +ESD LE ++++++   + T +  ++E+IW+ +E + I   +H++R+AN VAH +A
Subjt:  AGCFHLQRKCPIKALEALAILEGLKALSQS----LTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIA

Query:  RRACE
        RRA E
Subjt:  RRACE

A0A803PLN3 Uncharacterized protein1.1e-0529.23Show/hide
Query:  MAGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRA
        +AG  +    C ++  EA AILE LK    +      I +E++SDC  +V+ I      L+ VS ++  I   +ES       H+ R  N  AH +AR+ 
Subjt:  MAGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRA

Query:  CEEGFSSSWNQFCPTWLSALLAADSSGGRS
             +  +    P WL++   AD    RS
Subjt:  CEEGFSSSWNQFCPTWLSALLAADSSGGRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGGTGTTTCCACCTACAAAGGAAATGTCCCATTAAAGCTTTGGAAGCCCTAGCAATCTTGGAAGGTCTCAAAGCATTGAGTCAATCCCTCACCCTAGAAGCTGG
AATCAAAATTGAGGTGGAATCAGATTGTCTGGAAGTAGTGAACATCATCAATAAATCGTCCATGGAGCTCACCGGAGTTTCTCTAATTGTTGAAGACATATGGAAAGAGG
TGGAATCCTTGCCAATTGAAGGATTTAAGCATCTGACGAGGAAGGCTAATGGAGTCGCTCATGGGATAGCAAGGAGAGCCTGCGAAGAGGGATTCTCGTCTTCGTGGAAC
CAGTTTTGCCCTACGTGGCTGTCTGCTTTGTTGGCCGCTGATTCCTCGGGTGGGCGATCAGGAAGGACGACGGTTAGAGGTGGCATAGGTGCAACGTGCCGTCCGGAAAG
CATCTTGGGACATGCTTCCGACAGCTGCAAGGTGGTAGCACCTCCTGTGACTAAAGGACTCCTCCCCTATAGCTGTAGGATGCGCCCTTTTGTACTGACAACGCGCACCC
TCCCTTGCTACGGTTATGTACGGGGCATAACTGCTAGTGGTCCATTGTTCCATCCCAACCAGACGTGTGTCCTCCTCGACGACGTCGGGTTGAGGAAAGAAGTCGTACGT
GGTCCCGTTCCAGTTGGAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGGTGTTTCCACCTACAAAGGAAATGTCCCATTAAAGCTTTGGAAGCCCTAGCAATCTTGGAAGGTCTCAAAGCATTGAGTCAATCCCTCACCCTAGAAGCTGG
AATCAAAATTGAGGTGGAATCAGATTGTCTGGAAGTAGTGAACATCATCAATAAATCGTCCATGGAGCTCACCGGAGTTTCTCTAATTGTTGAAGACATATGGAAAGAGG
TGGAATCCTTGCCAATTGAAGGATTTAAGCATCTGACGAGGAAGGCTAATGGAGTCGCTCATGGGATAGCAAGGAGAGCCTGCGAAGAGGGATTCTCGTCTTCGTGGAAC
CAGTTTTGCCCTACGTGGCTGTCTGCTTTGTTGGCCGCTGATTCCTCGGGTGGGCGATCAGGAAGGACGACGGTTAGAGGTGGCATAGGTGCAACGTGCCGTCCGGAAAG
CATCTTGGGACATGCTTCCGACAGCTGCAAGGTGGTAGCACCTCCTGTGACTAAAGGACTCCTCCCCTATAGCTGTAGGATGCGCCCTTTTGTACTGACAACGCGCACCC
TCCCTTGCTACGGTTATGTACGGGGCATAACTGCTAGTGGTCCATTGTTCCATCCCAACCAGACGTGTGTCCTCCTCGACGACGTCGGGTTGAGGAAAGAAGTCGTACGT
GGTCCCGTTCCAGTTGGAAAGTAG
Protein sequenceShow/hide protein sequence
MAGCFHLQRKCPIKALEALAILEGLKALSQSLTLEAGIKIEVESDCLEVVNIINKSSMELTGVSLIVEDIWKEVESLPIEGFKHLTRKANGVAHGIARRACEEGFSSSWN
QFCPTWLSALLAADSSGGRSGRTTVRGGIGATCRPESILGHASDSCKVVAPPVTKGLLPYSCRMRPFVLTTRTLPCYGYVRGITASGPLFHPNQTCVLLDDVGLRKEVVR
GPVPVGK