| GenBank top hits | e value | %identity | Alignment |
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| CAC95126.1 gag-pol polyprotein [Populus deltoides] | 5.5e-47 | 29.47 | Show/hide |
Query: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
M YV V PK+T+ D S ++TWE++N+KII WINN V HSIG QLAKY+TAK VWDHL +L+TQSNFAKQYQLE +IRAL Q +MSIQ+ YS++
Subjt: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
Query: ---------------------------------------------------PLQSNNGVTA----------------------PSL--------------
PL S + V + PS+
Subjt: ---------------------------------------------------PLQSNNGVTA----------------------PSL--------------
Query: -------------------------------------------------------------------DPH-MFEQFQKFLVSHPYAMSAS-------SSK
DP+ + EQFQKFL P AMSAS SS
Subjt: -------------------------------------------------------------------DPH-MFEQFQKFLVSHPYAMSAS-------SSK
Query: GLSSSD------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSG-YSVFFLLPLVQYKTYSIR
G+S S+ +S+ ++TADGTPMPL G+GS+VT ++SL +VY IP L LNL S+ Q+C SG Y V F + +
Subjt: GLSSSD------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSG-YSVFFLLPLVQYKTYSIR
Query: RRLGQAIGR---GLYVLDQLKVADIV-ASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTG---------------------------------
+ +G GR GLY+LD+LKV +V A++VD FFRL+ SSS FYLWHSRL HV +SRLRFL STG
Subjt: RRLGQAIGR---GLYVLDQLKVADIV-ASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTG---------------------------------
Query: ---------------------------------------------------------------------------------------ALDETL-------
ALD T+
Subjt: ---------------------------------------------------------------------------------------ALDETL-------
Query: -------------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHL
H++ET RS LLS V SEFWG+A+LTA ++N IP+SH+ GLS FEK H+
Subjt: -------------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHL
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| PWA56951.1 gag-pol polyprotein [Artemisia annua] | 9.3e-47 | 37.12 | Show/hide |
Query: MRNYVMSKRVKP-KDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI
M YV+ + KP +YE+ L+TWE DNSK+I WINNSV SIG QLAKYD+AK VWDHLA+LYTQSNFAKQYQLET+IR+LQQNDMSIQD YSS+
Subjt: MRNYVMSKRVKP-KDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------------------PLQSNNGVTAPSLDPHMFEQFQKFLVSHPYAMSASSSKGLSSS-----------------------------DAS
P Q NNGV APSLDP + EQFQKFL P A++ SS LSSS D+S
Subjt: -------------------------PLQSNNGVTAPSLDPHMFEQFQKFLVSHPYAMSASSSKGLSSS-----------------------------DAS
Query: VSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRRRLGQAIGR---GLYVLDQLKVADIVASS
SI+ A+G MPL G+GSI TP VSLSDVYYIP+LT+NL SV Q+C SGY V F + + + +G GR GLYVLD K VA+S
Subjt: VSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRRRLGQAIGR---GLYVLDQLKVADIVASS
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| TXG46279.1 hypothetical protein EZV62_028218 [Acer yangbiense] | 7.2e-47 | 31.44 | Show/hide |
Query: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
M Y+ VKPK+ KA DY + L+ WE++NSKII WINNSV HSIG QLAKYD VWDHLA+LYTQSNFAKQYQLE++IRAL+Q MSIQ+ YS +
Subjt: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------------------------------------------------------------PLQSNNGVTAP----------SLDPHM---FEQ
P Q N T P S +P+M EQ
Subjt: -------------------------------------------------------------------PLQSNNGVTAP----------SLDPHM---FEQ
Query: FQKF--LVSHPYAMSASSSKGLSSS---------DASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKT
FQ + S + + + +S +S + +S+S++T DGTPMPL G+GS+VTP VSLS+VY+IP+LTLNLVSVSQLC S
Subjt: FQKF--LVSHPYAMSASSSKGLSSS---------DASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKT
Query: YSIRRRLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETLHLIETVRSF
GLY LD+L+V + AS VD FRL+ SSS FYLWHSRL HV ASRL++L STGAL L +++ S
Subjt: YSIRRRLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETLHLIETVRSF
Query: LLSVD-VPSEFWGKAILT----ATHVVNRIPTSHNYGLSSFEKFSHH
L D V S+ WG + +T + + V+ I Y LS FEK H
Subjt: LLSVD-VPSEFWGKAILT----ATHVVNRIPTSHNYGLSSFEKFSHH
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| TXG60844.1 hypothetical protein EZV62_012207 [Acer yangbiense] | 1.8e-42 | 28.14 | Show/hide |
Query: YVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQND--------------
YV S VKPK+ K DY + L+ WE++NSKII WINNSV HSIG QLAKYD VWDHLA+LYTQSNFAKQYQLE++IRAL+Q
Subjt: YVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQND--------------
Query: ------MSIQD--------------------------------------------------------------LYSSI----------------------
M+++D YSS+
Subjt: ------MSIQD--------------------------------------------------------------LYSSI----------------------
Query: -----------------------------------------PLQSNNGVTAP----------SLDPHM---FEQFQKFLVSHPYAMSASSSKGL---SSS
P Q N T P S +P+M E+FQKFL + P AMS SS GL SSS
Subjt: -----------------------------------------PLQSNNGVTAP----------SLDPHM---FEQFQKFLVSHPYAMSASSSKGL---SSS
Query: D-----------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRR
D +S+S++T +GT MPL G+GS+VT VSLS+VY+IP+LT NLVSVS R
Subjt: D-----------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRR
Query: RLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETL--------------
R G GLY LD+LKV A VD FRL+ SSS FYLWHS L HV AS L++L STGAL+ TL
Subjt: RLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETL--------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHLTHSDLIDI
H++ET RS LLS VPS FWG+A+LTA +++N+IP++H GLS FEK H + + +
Subjt: --------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHLTHSDLIDI
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| XP_023746140.1 uncharacterized protein LOC111894292 [Lactuca sativa] | 8.5e-40 | 31.62 | Show/hide |
Query: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
M YV + KP + Y+ L+ E+DNSK+I WIN SV SIG+QLAKYDT K VW+HL +LYTQSNFAKQYQLE +I +LQQND SIQD Y+++
Subjt: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
Query: PLQSNNGVT-------------------------------------------APSLDPHMFEQFQKFLVSHPYAMSASSSKGLSSSDA------------
L G+T PS+D + E L+S M + + KG ++
Subjt: PLQSNNGVT-------------------------------------------APSLDPHMFEQFQKFLVSHPYAMSASSSKGLSSSDA------------
Query: -----------------------SVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTL----NLVSVSQL----CKSGYSVFFLLPLV---------
S S T TP P + V P V V ++P L + S+SQ+ KS L+ V
Subjt: -----------------------SVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTL----NLVSVSQL----CKSGYSVFFLLPLV---------
Query: ------QYKTYSIRRRLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTG-----------------------
K I RR+G+ LYVL+ LKV+ + ASS+D F L+ SS FYLWHSRL HVF SRL FL S+G
Subjt: ------QYKTYSIRRRLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTG-----------------------
Query: -----------------------------ALDETL--------------------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSF
A D T+ H++ET RS LLS VPS FWG+A+LTA +++ RIPTS N G+S F
Subjt: -----------------------------ALDETL--------------------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSF
Query: EKFSHH
EK H
Subjt: EKFSHH
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2U1M6T2 Gag-pol polyprotein | 4.5e-47 | 37.12 | Show/hide |
Query: MRNYVMSKRVKP-KDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI
M YV+ + KP +YE+ L+TWE DNSK+I WINNSV SIG QLAKYD+AK VWDHLA+LYTQSNFAKQYQLET+IR+LQQNDMSIQD YSS+
Subjt: MRNYVMSKRVKP-KDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------------------PLQSNNGVTAPSLDPHMFEQFQKFLVSHPYAMSASSSKGLSSS-----------------------------DAS
P Q NNGV APSLDP + EQFQKFL P A++ SS LSSS D+S
Subjt: -------------------------PLQSNNGVTAPSLDPHMFEQFQKFLVSHPYAMSASSSKGLSSS-----------------------------DAS
Query: VSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRRRLGQAIGR---GLYVLDQLKVADIVASS
SI+ A+G MPL G+GSI TP VSLSDVYYIP+LT+NL SV Q+C SGY V F + + + +G GR GLYVLD K VA+S
Subjt: VSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRRRLGQAIGR---GLYVLDQLKVADIVASS
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| A0A5C7GP75 Protein kinase domain-containing protein | 3.5e-47 | 31.44 | Show/hide |
Query: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
M Y+ VKPK+ KA DY + L+ WE++NSKII WINNSV HSIG QLAKYD VWDHLA+LYTQSNFAKQYQLE++IRAL+Q MSIQ+ YS +
Subjt: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------------------------------------------------------------PLQSNNGVTAP----------SLDPHM---FEQ
P Q N T P S +P+M EQ
Subjt: -------------------------------------------------------------------PLQSNNGVTAP----------SLDPHM---FEQ
Query: FQKF--LVSHPYAMSASSSKGLSSS---------DASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKT
FQ + S + + + +S +S + +S+S++T DGTPMPL G+GS+VTP VSLS+VY+IP+LTLNLVSVSQLC S
Subjt: FQKF--LVSHPYAMSASSSKGLSSS---------DASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKT
Query: YSIRRRLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETLHLIETVRSF
GLY LD+L+V + AS VD FRL+ SSS FYLWHSRL HV ASRL++L STGAL L +++ S
Subjt: YSIRRRLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETLHLIETVRSF
Query: LLSVD-VPSEFWGKAILT----ATHVVNRIPTSHNYGLSSFEKFSHH
L D V S+ WG + +T + + V+ I Y LS FEK H
Subjt: LLSVD-VPSEFWGKAILT----ATHVVNRIPTSHNYGLSSFEKFSHH
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| A0A5C7HVL1 Integrase catalytic domain-containing protein | 8.8e-43 | 28.14 | Show/hide |
Query: YVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQND--------------
YV S VKPK+ K DY + L+ WE++NSKII WINNSV HSIG QLAKYD VWDHLA+LYTQSNFAKQYQLE++IRAL+Q
Subjt: YVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQND--------------
Query: ------MSIQD--------------------------------------------------------------LYSSI----------------------
M+++D YSS+
Subjt: ------MSIQD--------------------------------------------------------------LYSSI----------------------
Query: -----------------------------------------PLQSNNGVTAP----------SLDPHM---FEQFQKFLVSHPYAMSASSSKGL---SSS
P Q N T P S +P+M E+FQKFL + P AMS SS GL SSS
Subjt: -----------------------------------------PLQSNNGVTAP----------SLDPHM---FEQFQKFLVSHPYAMSASSSKGL---SSS
Query: D-----------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRR
D +S+S++T +GT MPL G+GS+VT VSLS+VY+IP+LT NLVSVS R
Subjt: D-----------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFFLLPLVQYKTYSIRR
Query: RLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETL--------------
R G GLY LD+LKV A VD FRL+ SSS FYLWHS L HV AS L++L STGAL+ TL
Subjt: RLGQAIGRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGALD------------------ETL--------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHLTHSDLIDI
H++ET RS LLS VPS FWG+A+LTA +++N+IP++H GLS FEK H + + +
Subjt: --------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHLTHSDLIDI
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| A0A5R9QJX9 gag_pre-integrs domain-containing protein (Fragment) | 5.0e-30 | 55.7 | Show/hide |
Query: SHPYAMSASSSKGLSSSDASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFF------LLPLVQYKTYSIRRRLGQAI
SH + SS LSS + + +++A TPM + G+GSIVTPY+SLSDVY+IP+L LNLVSVSQLCKSG VFF + K I RRLG
Subjt: SHPYAMSASSSKGLSSSDASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSGYSVFF------LLPLVQYKTYSIRRRLGQAI
Query: GRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGAL
LYVL+QL AD+ ASSVD F L+ SS+FYLWHSRL HV ASRL+FLVSTG L
Subjt: GRGLYVLDQLKVADIVASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTGAL
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| Q710T7 Gag-pol polyprotein | 2.7e-47 | 29.47 | Show/hide |
Query: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
M YV V PK+T+ D S ++TWE++N+KII WINN V HSIG QLAKY+TAK VWDHL +L+TQSNFAKQYQLE +IRAL Q +MSIQ+ YS++
Subjt: MRNYVMSKRVKPKDTKANDYESALNTWESDNSKIIIWINNSVMHSIGVQLAKYDTAKVVWDHLAKLYTQSNFAKQYQLETNIRALQQNDMSIQDLYSSI-
Query: ---------------------------------------------------PLQSNNGVTA----------------------PSL--------------
PL S + V + PS+
Subjt: ---------------------------------------------------PLQSNNGVTA----------------------PSL--------------
Query: -------------------------------------------------------------------DPH-MFEQFQKFLVSHPYAMSAS-------SSK
DP+ + EQFQKFL P AMSAS SS
Subjt: -------------------------------------------------------------------DPH-MFEQFQKFLVSHPYAMSAS-------SSK
Query: GLSSSD------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSG-YSVFFLLPLVQYKTYSIR
G+S S+ +S+ ++TADGTPMPL G+GS+VT ++SL +VY IP L LNL S+ Q+C SG Y V F + +
Subjt: GLSSSD------------------------ASVSIVTADGTPMPLVGIGSIVTPYVSLSDVYYIPSLTLNLVSVSQLCKSG-YSVFFLLPLVQYKTYSIR
Query: RRLGQAIGR---GLYVLDQLKVADIV-ASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTG---------------------------------
+ +G GR GLY+LD+LKV +V A++VD FFRL+ SSS FYLWHSRL HV +SRLRFL STG
Subjt: RRLGQAIGR---GLYVLDQLKVADIV-ASSVDSFFFRLTDSSSIFYLWHSRLDHVFASRLRFLVSTG---------------------------------
Query: ---------------------------------------------------------------------------------------ALDETL-------
ALD T+
Subjt: ---------------------------------------------------------------------------------------ALDETL-------
Query: -------------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHL
H++ET RS LLS V SEFWG+A+LTA ++N IP+SH+ GLS FEK H+
Subjt: -------------HLIETVRSFLLSVDVPSEFWGKAILTATHVVNRIPTSHNYGLSSFEKFSHHL
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