CuGenDBv2

Gene ID	Moc04g05590
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein RADIALIS-like 3
Genome location	chr4:3775990..3777704
RNA-Seq Expression	Moc04g05590
Synteny	Moc04g05590
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:1990904 - ribonucleoprotein complex (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001005 - SANT/Myb domain IPR009057 - Homeobox-like domain superfamily IPR017930 - Myb domain IPR044636 - Transcription factor RADIALIS-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022136071.1 protein RADIALIS-like 3 [Momordica charantia]

8.8e-47

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASA AAGNADEELRLLKYLKLR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]

3.3e-38

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHY+ILLEDL RIESGRVPIPNYR       N DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]

2.6e-38

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHY+ILLEDL+RIESGRVPIPNYR     A N DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]

1.8e-39

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHY+ILLEDLRRIESGRVPIPNYR     A N DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]

8.8e-39

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKS DEVKRHY++LLEDLRRIESGRVPIPNYR      GN DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K2A2 SANT domain-containing protein

1.6e-38

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHY+ILLEDLRRIESGRVPIPNYR ++    N DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

A0A1S3BHB0 protein RADIALIS-like 3

3.6e-38

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHY+ILLEDLR+IESGRVPIPNYR ++    N DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

A0A6J1C2H2 protein RADIALIS-like 3

4.2e-47

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASA AAGNADEELRLLKYLKLR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

A0A6J1GKW1 protein RADIALIS-like 3

1.6e-38

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHY+ILLEDL RIESGRVPIPNYR       N DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

A0A6J1ICR6 protein RADIALIS-like 3

1.2e-38

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHY+ILLEDL+RIESGRVPIPNYR     A N DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

SwissProt top hits

e value

%identity

Alignment

F4JVB8 Protein RADIALIS-like 1

8.3e-24

51.49

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRAS-AVAAGNADEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVKRHY++L++D+  IE+G VP PNYR S     G   +E + ++ ++L
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRAS-AVAAGNADEELRLLKYLKL

Query:  R
        +
Subjt:  R

Q1A173 Protein RADIALIS-like 6

7.0e-23

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRA-SAVAAGNADEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY IL+EDL  IE+GRVP+PNY+   + +    D + R +K LK+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRA-SAVAAGNADEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS

5.9e-22

53.49

Show/hide

Query:  WTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR
        W+AK+NK FE+ALA+YDK+TP+RW N+A AV G++ +EVK+HY+IL+ED++ IESG+VP PNYR +    GN   + +  + LK+R
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

Q6NNN0 Protein RADIALIS-like 3

1.6e-22

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRAS
        MAS+S+      A+WT K+NKLFE+ALA YD++TP+RW N+A AVGGKSA+EV+RHY++L+ D+  IESGR P PNYR++
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRAS

Q8GW75 Protein RADIALIS-like 5

1.7e-24

54.37

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAA---GNADEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY IL+EDL  IE   VP+P Y+   V +   G  D +LRL+K +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAA---GNADEELRLLKYL

Query:  KLR
        +++
Subjt:  KLR

Arabidopsis top hits

e value

%identity

Alignment

AT1G19510.1 RAD-like 5

1.2e-25

54.37

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAA---GNADEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY IL+EDL  IE   VP+P Y+   V +   G  D +LRL+K +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAA---GNADEELRLLKYL

Query:  KLR
        +++
Subjt:  KLR

AT1G75250.1 RAD-like 6

1.9e-23

62.82

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYR

AT1G75250.2 RAD-like 6

5.0e-24

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRA-SAVAAGNADEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY IL+EDL  IE+GRVP+PNY+   + +    D + R +K LK+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRA-SAVAAGNADEELRLLKYLKL

AT2G18328.1 RAD-like 4

3.9e-21

60.26

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYR
        MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA AVGGKS +EVKRHY++LL D+  IESGR P P YR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYR

AT4G39250.1 RAD-like 1

5.9e-25

51.49

Show/hide

Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRAS-AVAAGNADEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVKRHY++L++D+  IE+G VP PNYR S     G   +E + ++ ++L
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRAS-AVAAGNADEELRLLKYLKL

Query:  R
        +
Subjt:  R

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCGAGCTCTCTGAAGCAGCAGCGGCCGGAGGCAACTTGGACGGCGAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAAACGCCG
GAGAGATGGCAGAATATTGCCAACGCCGTCGGCGGCAAGTCCGCCGACGAAGTCAAACGTCACTACCAGATTCTCTTGGAAGATCTCCGGCGGATCGAGTCCGGC
CGCGTTCCCATCCCCAATTACAGAGCCTCCGCCGTCGCCGCCGGCAATGCCGATGAGGAGTTGAGGCTGCTGAAGTATCTTAAGCTGCGATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

Moc04g05590 (gene) of Bitter gourd (OHB3-1) v2 genome