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Moc04g05610 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g05610
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein RADIALIS-like 1
Genome locationchr4:3785589..3797695
RNA-Seq ExpressionMoc04g05610
SyntenyMoc04g05610
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.1e-3190Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS
        MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG G+
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]5.0e-3287.8Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSHD
        MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSGGG+ +
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSHD

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]8.5e-3290Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS
        MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSGGG+
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.1e-3190Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS
        MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG G+
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]8.8e-37100Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH
        MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein4.1e-3290Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS
        MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSGGG+
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS

A0A1S3BFW6 protein RADIALIS-like 15.4e-3290Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS
        MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG G+
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS

A0A5A7SYK4 Protein RADIALIS-like 15.4e-3290Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS
        MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG G+
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS

A0A6J1C385 protein RADIALIS-like 14.2e-37100Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH
        MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH

A0A6J1GJE9 protein RADIALIS-like 13.3e-2985.19Show/hide
Query:  MASMSSHGSS-AWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS
        MASMSSHGS+  WT KQNKAFE+ALAVYDQDTP+RWLNVAKAV GKT EEV+RHY LLVEDVKFIESGQV FPYRTSGGG+
Subjt:  MASMSSHGSS-AWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.5e-2675.64Show/hide
Query:  ASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGG
        +SMSS  S +WTAKQNKAFE+ALA YDQDTP RW NVAK VGGKT EEVKRHYELLV+D+  IE+G V FP YRTSGG
Subjt:  ASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGG

Q58FS3 Transcription factor RADIALIS2.6e-2368.35Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGG
        MAS    G   W+AK+NKAFE+ALAVYD+DTP+RW NVA+AV G+T EEVK+HYE+LVED+K+IESG+V FP YRT+GG
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGG

Q6NNN0 Protein RADIALIS-like 33.7e-2262.96Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH
        MAS S   S++WT K+NK FE+ALA YDQDTP+RW NVA+AVGGK+AEEV+RHYELL+ DV  IESG+   P   S G +H
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSH

Q8GW75 Protein RADIALIS-like 54.1e-2165.43Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGS
        MAS S   SS+WT+KQNK FE+ALAVYD+DTP+RW NVAKAVG K+AEEVKRHY++LVED+  IE   V  P Y+T   GS
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGS

Q9SIJ5 Protein RADIALIS-like 22.1e-2568.67Show/hide
Query:  SMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGSHDGR
        SMSS+GS +WT KQNKAFE+ALAVYDQDTP+RW NVA+AVGGKT EE KR Y+LLV D++ IE+G V FP Y+T+ G S+ GR
Subjt:  SMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGSHDGR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.9e-2265.43Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGS
        MAS S   SS+WT+KQNK FE+ALAVYD+DTP+RW NVAKAVG K+AEEVKRHY++LVED+  IE   V  P Y+T   GS
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGS

AT1G75250.1 RAD-like 61.4e-2159.57Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGSH-----DGRYGTQ
        MAS S    S WT  QNK FE+ALAVYD+DTP+RW NVAKAVGGKT EEVKRHY++LVED+  IE+G+V  P Y+T    S      D RY T+
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGSH-----DGRYGTQ

AT1G75250.2 RAD-like 61.4e-2167.11Show/hide
Query:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRT
        MAS S    S WT  QNK FE+ALAVYD+DTP+RW NVAKAVGGKT EEVKRHY++LVED+  IE+G+V  P Y+T
Subjt:  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRT

AT2G21650.1 Homeodomain-like superfamily protein1.5e-2668.67Show/hide
Query:  SMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGSHDGR
        SMSS+GS +WT KQNKAFE+ALAVYDQDTP+RW NVA+AVGGKT EE KR Y+LLV D++ IE+G V FP Y+T+ G S+ GR
Subjt:  SMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGGGSHDGR

AT4G39250.1 RAD-like 11.8e-2775.64Show/hide
Query:  ASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGG
        +SMSS  S +WTAKQNKAFE+ALA YDQDTP RW NVAK VGGKT EEVKRHYELLV+D+  IE+G V FP YRTSGG
Subjt:  ASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFP-YRTSGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCGTCTCATGGGTCTAGTGCATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCTTTGGCGGTGTACGATCAAGATACACCCGAACGATGGCTGAA
TGTTGCAAAGGCTGTCGGTGGAAAAACTGCAGAGGAAGTTAAGAGGCATTATGAACTTCTTGTGGAGGATGTTAAGTTTATCGAGTCGGGCCAAGTTTCCTTCCCCTATC
GGACCTCGGGAGGTGGTAGCCATGATGGAAGGTATGGGACGCAACTTCCACCATACGAGGCTGAACTTGAATGCCATTTGTCGAATCAAGAGTGGGGACGCGATGGATTC
GGGCCGACAGGCATCACAGCCGAGTCGGTTCTTCTGGAGTTCTCAATCGAGGGCCAAGAACGGCTCGATATCGAAAAGGATGCCAACCCTAGATTTGATATTCGTGGGCT
TTGGGACGGGATGCCTCAAGCATCGGTAGAGGAATGGGGACAGGGCTCGATTCTGGGGTCCGAACGCCATACACTTGAAACAGGGACCGAGAGGGAAAAAGGAGAGCGTC
GAGGGCCTTCTCGACCAAAGGCTGAGGAGGGGTCAGCGCTGAGGTGGGGTCGGTCCTTTGGTGGGCCGGCCTCCGTGCCTTGGGTCGGCACTGTCTGTCGATGGTCTCGG
TTGTCCTTCCGAATGCAGTCGAATCTTCTACCATATTGCTCCATACATAACAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCGTCTCATGGGTCTAGTGCATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCTTTGGCGGTGTACGATCAAGATACACCCGAACGATGGCTGAA
TGTTGCAAAGGCTGTCGGTGGAAAAACTGCAGAGGAAGTTAAGAGGCATTATGAACTTCTTGTGGAGGATGTTAAGTTTATCGAGTCGGGCCAAGTTTCCTTCCCCTATC
GGACCTCGGGAGGTGGTAGCCATGATGGAAGGTATGGGACGCAACTTCCACCATACGAGGCTGAACTTGAATGCCATTTGTCGAATCAAGAGTGGGGACGCGATGGATTC
GGGCCGACAGGCATCACAGCCGAGTCGGTTCTTCTGGAGTTCTCAATCGAGGGCCAAGAACGGCTCGATATCGAAAAGGATGCCAACCCTAGATTTGATATTCGTGGGCT
TTGGGACGGGATGCCTCAAGCATCGGTAGAGGAATGGGGACAGGGCTCGATTCTGGGGTCCGAACGCCATACACTTGAAACAGGGACCGAGAGGGAAAAAGGAGAGCGTC
GAGGGCCTTCTCGACCAAAGGCTGAGGAGGGGTCAGCGCTGAGGTGGGGTCGGTCCTTTGGTGGGCCGGCCTCCGTGCCTTGGGTCGGCACTGTCTGTCGATGGTCTCGG
TTGTCCTTCCGAATGCAGTCGAATCTTCTACCATATTGCTCCATACATAACAAATAG
Protein sequenceShow/hide protein sequence
MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGQVSFPYRTSGGGSHDGRYGTQLPPYEAELECHLSNQEWGRDGF
GPTGITAESVLLEFSIEGQERLDIEKDANPRFDIRGLWDGMPQASVEEWGQGSILGSERHTLETGTEREKGERRGPSRPKAEEGSALRWGRSFGGPASVPWVGTVCRWSR
LSFRMQSNLLPYCSIHNK