; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g05650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g05650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein RADIALIS-like 1
Genome locationchr4:3824074..3829660
RNA-Seq ExpressionMoc04g05650
SyntenyMoc04g05650
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OEL16565.1 Protein RADIALIS-like 3 [Dichanthelium oligosanthes]1.7e-3650.56Show/hide
Query:  MSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAI-GEKTEEEVKRHYQLLVEDVKHIEFGEVSFPY-----RPLSM--------------ASMSA
        M+++ S  WT  ++K FERALAVYD DTP RW NVA+ I G K+ EEV+RHYQ LV D+  IE   V F +      P ++              ASMS 
Subjt:  MSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAI-GEKTEEEVKRHYQLLVEDVKHIEFGEVSFPY-----RPLSM--------------ASMSA

Query:  HGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGCYDN
              W+A QNK FE+ALAVYD D P RW N+A A+GGK+ EEV+R+Y+LLV+DV HIE+G+VPFP YR  GG   N
Subjt:  HGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGCYDN

ONK66308.1 uncharacterized protein A4U43_C06F6350 [Asparagus officinalis]1.2e-3453.11Show/hide
Query:  MASMS-AHGSGS-WTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYRPLSMASMS----AHGSD-------
        MAS S  H SGS WTA QNK FE+ALAVYD++TP RW N+A+A+G ++ E+VKRHYQLL EDV+HIE G V FPY   S         AH S        
Subjt:  MASMS-AHGSGS-WTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYRPLSMASMS----AHGSD-------

Query:  -------GAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGC
                +W+A QNK FE+ LAVYD+DTP RW NVA  I GK+ E+VKR Y+LL ED+K+IES   P    S G C
Subjt:  -------GAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGC

RWW03508.1 hypothetical protein GW17_00033334 [Ensete ventricosum]2.8e-3448.82Show/hide
Query:  SGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YR----------------PLSMASMSAHGSDGAWS
        S SWTA +NK FE+ALAVYD DTP RW  +A+A+G KT +EVKR+Y LLVEDV+ IE G + +  YR                   +  M++     +WS
Subjt:  SGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YR----------------PLSMASMSAHGSDGAWS

Query:  AMQNKAFERALAVYDEDTPQRWLNVANAIG-GKTEEEVKRHYQLLVEDVKHIESGEVPF----PYRSSGG
          +NK+FE ALA+YDE+TP+RW NVA A+G G++ EEVKRHY+LLV+D+ HI+S + P     P R S G
Subjt:  AMQNKAFERALAVYDEDTPQRWLNVANAIG-GKTEEEVKRHYQLLVEDVKHIESGEVPF----PYRSSGG

XP_022136067.1 protein RADIALIS-like 1 [Momordica charantia]6.8e-33100Show/hide
Query:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYR
        MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYR
Subjt:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYR

XP_022136072.1 protein RADIALIS-like 1 [Momordica charantia]1.4e-41100Show/hide
Query:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGCYDNDR
        MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGCYDNDR
Subjt:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGCYDNDR

TrEMBL top hitse value%identityAlignment
A0A1E5UUT9 Protein RADIALIS-like 38.4e-3750.56Show/hide
Query:  MSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAI-GEKTEEEVKRHYQLLVEDVKHIEFGEVSFPY-----RPLSM--------------ASMSA
        M+++ S  WT  ++K FERALAVYD DTP RW NVA+ I G K+ EEV+RHYQ LV D+  IE   V F +      P ++              ASMS 
Subjt:  MSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAI-GEKTEEEVKRHYQLLVEDVKHIEFGEVSFPY-----RPLSM--------------ASMSA

Query:  HGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGCYDN
              W+A QNK FE+ALAVYD D P RW N+A A+GGK+ EEV+R+Y+LLV+DV HIE+G+VPFP YR  GG   N
Subjt:  HGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGCYDN

A0A444DZK6 Uncharacterized protein1.3e-3448.82Show/hide
Query:  SGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YR----------------PLSMASMSAHGSDGAWS
        S SWTA +NK FE+ALAVYD DTP RW  +A+A+G KT +EVKR+Y LLVEDV+ IE G + +  YR                   +  M++     +WS
Subjt:  SGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YR----------------PLSMASMSAHGSDGAWS

Query:  AMQNKAFERALAVYDEDTPQRWLNVANAIG-GKTEEEVKRHYQLLVEDVKHIESGEVPF----PYRSSGG
          +NK+FE ALA+YDE+TP+RW NVA A+G G++ EEVKRHY+LLV+D+ HI+S + P     P R S G
Subjt:  AMQNKAFERALAVYDEDTPQRWLNVANAIG-GKTEEEVKRHYQLLVEDVKHIESGEVPF----PYRSSGG

A0A5P1EJZ6 Uncharacterized protein6.0e-3553.11Show/hide
Query:  MASMS-AHGSGS-WTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYRPLSMASMS----AHGSD-------
        MAS S  H SGS WTA QNK FE+ALAVYD++TP RW N+A+A+G ++ E+VKRHYQLL EDV+HIE G V FPY   S         AH S        
Subjt:  MASMS-AHGSGS-WTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYRPLSMASMS----AHGSD-------

Query:  -------GAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGC
                +W+A QNK FE+ LAVYD+DTP RW NVA  I GK+ E+VKR Y+LL ED+K+IES   P    S G C
Subjt:  -------GAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGC

A0A6J1C4I7 protein RADIALIS-like 13.3e-33100Show/hide
Query:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYR
        MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYR
Subjt:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYR

A0A6J1C4J2 protein RADIALIS-like 16.6e-42100Show/hide
Query:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGCYDNDR
        MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGCYDNDR
Subjt:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGCYDNDR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.2e-2565.06Show/hide
Query:  LSMASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGC
        ++ +SMS+  S G+W+A QNKAFE+ALA YD+DTP RW NVA  +GGKT EEVKRHY+LLV+D+  IE+G VPFP YR+SGGC
Subjt:  LSMASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGC

Q58FS3 Transcription factor RADIALIS1.6e-2465.43Show/hide
Query:  SAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGCYDND
        S  GS   WSA +NKAFERALAVYD+DTP RW NVA A+ G+T EEVK+HY++LVED+K+IESG+VPFP YR++GG    D
Subjt:  SAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGCYDND

Q6NNN0 Protein RADIALIS-like 31.5e-1960.76Show/hide
Query:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSG
        MAS S   S  +W+  +NK FERALA YD+DTP RW NVA A+GGK+ EEV+RHY+LL+ DV  IESG  P P YRS+G
Subjt:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSG

Q8GW75 Protein RADIALIS-like 52.0e-1955.21Show/hide
Query:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YRPLSMASMSAHGSDGAWSAMQN
        MAS S   S SWT+ QNK FERALAVYD+DTP RW NVAKA+G K+ EEVKRHY +LVED+ +IE   V  P Y+ + + S S    D     M+N
Subjt:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YRPLSMASMSAHGSDGAWSAMQN

Q9SIJ5 Protein RADIALIS-like 23.7e-2170Show/hide
Query:  SMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP
        SMS++GSGSWT  QNKAFERALAVYD+DTP RW NVA+A+G KT EE KR Y LLV D++ IE G V FP
Subjt:  SMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.4e-2055.21Show/hide
Query:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YRPLSMASMSAHGSDGAWSAMQN
        MAS S   S SWT+ QNK FERALAVYD+DTP RW NVAKA+G K+ EEVKRHY +LVED+ +IE   V  P Y+ + + S S    D     M+N
Subjt:  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP-YRPLSMASMSAHGSDGAWSAMQN

AT1G75250.1 RAD-like 62.4e-2064.38Show/hide
Query:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP
        MAS ++  S   W+  QNK FERALAVYD+DTP RW NVA A+GGKT EEVKRHY +LVED+ +IE+G VP P
Subjt:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP

AT1G75250.2 RAD-like 62.4e-2064.38Show/hide
Query:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP
        MAS ++  S   W+  QNK FERALAVYD+DTP RW NVA A+GGKT EEVKRHY +LVED+ +IE+G VP P
Subjt:  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP

AT2G21650.1 Homeodomain-like superfamily protein2.6e-2270Show/hide
Query:  SMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP
        SMS++GSGSWT  QNKAFERALAVYD+DTP RW NVA+A+G KT EE KR Y LLV D++ IE G V FP
Subjt:  SMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFP

AT4G39250.1 RAD-like 12.3e-2665.06Show/hide
Query:  LSMASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGC
        ++ +SMS+  S G+W+A QNKAFE+ALA YD+DTP RW NVA  +GGKT EEVKRHY+LLV+D+  IE+G VPFP YR+SGGC
Subjt:  LSMASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFP-YRSSGGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCATGGGTCAGGTTCATGGACTGCAATGCAAAACAAAGCGTTTGAAAGGGCTTTGGCAGTGTATGATGAAGATACACCTCAGCGATGGTTGAA
TGTTGCAAAGGCAATTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAGCATATTGAGTTTGGTGAAGTTTCTTTCCCCTACA
GGCCATTATCAATGGCTTCAATGTCTGCTCATGGGTCGGATGGTGCATGGAGTGCAATGCAAAACAAGGCATTTGAAAGGGCTTTGGCAGTGTATGATGAAGACACACCT
CAACGATGGCTGAATGTTGCAAACGCCATTGGTGGCAAAACTGAAGAGGAAGTCAAGAGGCACTACCAGCTTCTTGTAGAGGATGTCAAGCATATTGAATCTGGTGAAGT
TCCTTTCCCGTACCGGAGCTCCGGTGGATGCTATGATAATGACCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTGCTCATGGGTCAGGTTCATGGACTGCAATGCAAAACAAAGCGTTTGAAAGGGCTTTGGCAGTGTATGATGAAGATACACCTCAGCGATGGTTGAA
TGTTGCAAAGGCAATTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAGCATATTGAGTTTGGTGAAGTTTCTTTCCCCTACA
GGCCATTATCAATGGCTTCAATGTCTGCTCATGGGTCGGATGGTGCATGGAGTGCAATGCAAAACAAGGCATTTGAAAGGGCTTTGGCAGTGTATGATGAAGACACACCT
CAACGATGGCTGAATGTTGCAAACGCCATTGGTGGCAAAACTGAAGAGGAAGTCAAGAGGCACTACCAGCTTCTTGTAGAGGATGTCAAGCATATTGAATCTGGTGAAGT
TCCTTTCCCGTACCGGAGCTCCGGTGGATGCTATGATAATGACCGATGA
Protein sequenceShow/hide protein sequence
MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVEDVKHIEFGEVSFPYRPLSMASMSAHGSDGAWSAMQNKAFERALAVYDEDTP
QRWLNVANAIGGKTEEEVKRHYQLLVEDVKHIESGEVPFPYRSSGGCYDNDR