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Moc04g05660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g05660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein RADIALIS-like 1
Genome locationchr4:3837212..3839751
RNA-Seq ExpressionMoc04g05660
SyntenyMoc04g05660
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-3185.88Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY+ S+ DD P KR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

XP_022136148.1 protein RADIALIS-like 1 [Momordica charantia]1.2e-39100Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]2.1e-3185.88Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY+ S+ DD P KR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

XP_022972527.1 protein RADIALIS-like 1 [Cucurbita maxima]6.0e-3184.71Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAK VGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY+ S+ DD P KR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]4.6e-3184.71Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSS GS+AWTAMQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL++DVKHIESG+VPFPY +S+ DD P KR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 26.4e-3179.78Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPY-QTSNDDDFPTKRVIL
        MASMSS GS+AWT MQNK FE+ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY  TS+DDD P KR ++
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPY-QTSNDDDFPTKRVIL

A0A5D3D8F6 Protein RADIALIS-like 24.9e-3179.78Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPY-QTSNDDDFPTKRVIL
        MASMSS GS+AWT MQNK FE+ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY  TS+DDD P KR ++
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPY-QTSNDDDFPTKRVIL

A0A6J1C6U4 protein RADIALIS-like 15.8e-40100Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

A0A6J1GK35 protein RADIALIS-like 19.9e-3285.88Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY+ S+ DD P KR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

A0A6J1I517 protein RADIALIS-like 12.9e-3184.71Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR
        MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAK VGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY+ S+ DD P KR
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.3e-2472.37Show/hide
Query:  ASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS
        +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LLV+D+  IE+GHVPFP Y+TS
Subjt:  ASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS

Q1A173 Protein RADIALIS-like 64.9e-2060.87Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT--SND---DDFPTKRV
        MAS S    S WT  QNK FE ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +LVED+ +IE+G VP P Y+T  SN    +DF T+++
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT--SND---DDFPTKRV

Q58FS3 Transcription factor RADIALIS2.9e-2066.22Show/hide
Query:  SSRGSS-AWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS
        S+RGS   W+A +NKAFE ALAVYD+DTP+RW NVA+AV  +T EEVK+HY++LVED+K+IESG VPFP Y+T+
Subjt:  SSRGSS-AWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS

Q8GW75 Protein RADIALIS-like 58.4e-2065.79Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT
        MAS S   SS+WT+ QNK FE ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +LVED+ +IE   VP P Y+T
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT

Q9SIJ5 Protein RADIALIS-like 21.8e-2270.67Show/hide
Query:  SMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS
        SMSS GS +WT  QNKAFE ALAVYDQDTP+RW NVA+AVG KT EE KR Y LLV D++ IE+GHVPFP Y+T+
Subjt:  SMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.0e-2165.79Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT
        MAS S   SS+WT+ QNK FE ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +LVED+ +IE   VP P Y+T
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT

AT1G75250.1 RAD-like 66.0e-2160.87Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT--SND---DDFPTKRV
        MAS S    S WT  QNK FE ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +LVED+ +IE+G VP P Y+T  SN    +DF T+ +
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT--SND---DDFPTKRV

AT1G75250.2 RAD-like 63.5e-2160.87Show/hide
Query:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT--SND---DDFPTKRV
        MAS S    S WT  QNK FE ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +LVED+ +IE+G VP P Y+T  SN    +DF T+++
Subjt:  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQT--SND---DDFPTKRV

AT2G21650.1 Homeodomain-like superfamily protein1.3e-2370.67Show/hide
Query:  SMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS
        SMSS GS +WT  QNKAFE ALAVYDQDTP+RW NVA+AVG KT EE KR Y LLV D++ IE+GHVPFP Y+T+
Subjt:  SMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS

AT4G39250.1 RAD-like 12.3e-2572.37Show/hide
Query:  ASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS
        +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LLV+D+  IE+GHVPFP Y+TS
Subjt:  ASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFP-YQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCGTCTCGTGGGTCGAGTGCATGGACTGCAATGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAGTGTATGATCAAGACACGCCCGAGCGATGGCTGAA
TGTTGCAAAGGCTGTTGGAGAGAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAGCATATCGAATCCGGTCATGTTCCCTTCCCCTATC
AAACCTCGAACGATGATGATTTTCCGACAAAAAGAGTTATCCTCACATATACAATATTCCACGCCAAATCAGAAATTGAAAACATCCCTTCCAAACCTTTCAATCTGGAA
ATGGACTGTTCTGGCGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCGTCTCGTGGGTCGAGTGCATGGACTGCAATGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAGTGTATGATCAAGACACGCCCGAGCGATGGCTGAA
TGTTGCAAAGGCTGTTGGAGAGAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAGCATATCGAATCCGGTCATGTTCCCTTCCCCTATC
AAACCTCGAACGATGATGATTTTCCGACAAAAAGAGTTATCCTCACATATACAATATTCCACGCCAAATCAGAAATTGAAAACATCCCTTCCAAACCTTTCAATCTGGAA
ATGGACTGTTCTGGCGACTGA
Protein sequenceShow/hide protein sequence
MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKRVILTYTIFHAKSEIENIPSKPFNLE
MDCSGD