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Moc04g05850 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g05850
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionKeratin, type II cytoskeletal 1-like
Genome locationchr4:3987757..3990492
RNA-Seq ExpressionMoc04g05850
SyntenyMoc04g05850
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.6e-3452.35Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL
        TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E +PP +++     +S S+    NP +  WKRQD+LISSWL
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL

Query:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK
        LGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ M+ K+KLHN++K
Subjt:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]5.8e-3451.97Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW
        TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E +PP +++ +  G+S++S     NP +  WKRQD+LISSW
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW

Query:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN
        LLGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ MK K+KLHN++K +
Subjt:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.6e-3452.35Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL
        TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E +PP +++     +S S+    NP +  WKRQD+LISSWL
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL

Query:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK
        LGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ M+ K+KLHN++K
Subjt:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]5.8e-3451.97Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW
        TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E +PP +++ +  G+S++S     NP +  WKRQD+LISSW
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW

Query:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN
        LLGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ MK K+KLHN++K +
Subjt:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]5.3e-3557.45Show/hide
Query:  MSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL--NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLH
        +  S+ INPG+K+SIV+L DD  L WKFQ+ T L+G+GLESYI+   D P QF+Q     S+SS L  NP + +W +QDKLIS+WLLGSM+ED L QML 
Subjt:  MSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL--NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLH

Query:  CKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRNDSKK
        CKSAREIWT L  +F SR LA+VM++K KL N +K N S K
Subjt:  CKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRNDSKK

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-3452.35Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL
        TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E +PP +++     +S S+    NP +  WKRQD+LISSWL
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL

Query:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK
        LGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ M+ K+KLHN++K
Subjt:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like2.8e-3451.97Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW
        TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E +PP +++ +  G+S++S     NP +  WKRQD+LISSW
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW

Query:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN
        LLGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ MK K+KLHN++K +
Subjt:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-3452.35Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL
        TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E +PP +++     +S S+    NP +  WKRQD+LISSWL
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWL

Query:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK
        LGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ M+ K+KLHN++K
Subjt:  LGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQK

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like2.8e-3451.97Show/hide
Query:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW
        TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E +PP +++ +  G+S++S     NP +  WKRQD+LISSW
Subjt:  TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSW

Query:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN
        LLGSMSE+ L QMLHCKSA+EIW  L  IF SR LAQ MK K+KLHN++K +
Subjt:  LLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN

A0A6J1DLT9 uncharacterized protein LOC1110217572.5e-3557.45Show/hide
Query:  MSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL--NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLH
        +  S+ INPG+K+SIV+L DD  L WKFQ+ T L+G+GLESYI+   D P QF+Q     S+SS L  NP + +W +QDKLIS+WLLGSM+ED L QML 
Subjt:  MSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKL--NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLH

Query:  CKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRNDSKK
        CKSAREIWT L  +F SR LA+VM++K KL N +K N S K
Subjt:  CKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRNDSKK

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-1030.08Show/hide
Query:  NKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLL
        N  ++ KLT   +L W  QV    +G+ L  +++     P   I    GT  + ++NP +T+WKRQDKLI S +LG++S      +    +A +IW  L 
Subjt:  NKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLL

Query:  QIFISRNLAQVMKIKSKLHNLQK
        +I+ + +   V +++++L    K
Subjt:  QIFISRNLAQVMKIKSKLHNLQK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.3e-0929.57Show/hide
Query:  NKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLL
        N  ++ KLT   +L W  QV    +G+ L  +++     P   I    GT    ++NP +T+W+RQDKLI S +LG++S      +    +A +IW  L 
Subjt:  NKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLL

Query:  QIFISRNLAQVMKIK
        +I+ + +   V +++
Subjt:  QIFISRNLAQVMKIK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTTCGACAAACATGGAAGCTGATTCCACCGACACCGATGCAATGTCCGTCAGTCAATTAATTAATCCAGGAAACAAGATTTCGATCGTGAAGCTTACGGATGA
TTATTTCCTTTCGTGGAAATTTCAAGTACTCACTACTTTGGAAGGTCACGGATTAGAGTCGTACATTGAAGATGAAATTGATCCTCCTCTGCAATTTATTCAGGTCATTA
ATGGAACCTCTACTAGTTCGAAATTGAACCCGATTTTTACTAAGTGGAAACGACAGGATAAATTGATTTCATCTTGGTTGCTCGGCTCCATGTCTGAGGATTTTCTTGAA
CAAATGCTACATTGCAAGTCTGCTAGAGAAATTTGGACCTGTTTATTACAGATTTTTATTTCTCGCAATCTTGCACAAGTAATGAAAATTAAATCGAAGTTGCATAATCT
CCAAAAAAGGAATGACAGCAAAAAGGTTGTGGTGAATTCGGATGGCACTCCTCCATCGGCTAATCTCCTTACTCATGCTCCTACTATGGGAAAGGAGAATGAGAATCCTA
TATATTCTAATGTTCCTCAGTATACTTCTGGTTCTAATAATAGGACTCGCGGTGCTACTAATCATTTGAGGAACAATCTTACCAATCTGTCTATTGGTACAGAATACACT
GGAGGAAACCAGGACCACCGTACTACCATTCTTCTCCAAGGGACTCTGCATGATGGACTGTACCGGTTTCATCTTTCTCCTCTTTCTTCTGCTCCTATGTCTACCGCTAG
CCCTTCTTCTCAAGTCTTGTCTCCAACACCAGCTGCTCTGTTTTCGTCTTCTACCTCCTTGTCCCCTGCTGTGTCTCCTTCTCCTATTGATTTGTGGCATAGGCAACTTG
GATTTCCCTATTCCTCTGTTGTCCAACTCACCATCACCTACTTTAGCTGTTTCTTTCCCCCAATCGCTGCACCTATCCCCTCTGTATCTGGTTCTTCTCCAGCTATTCCT
GTATCAGCTGACAATCGTCCGACTTTTGCCGTTCGTACTGTTGCTTGTTCTATACCTGCTGCTGTCAGTTCTATTTCGGCTCCTCGTGTACCGTCTATGCCTCTTGATGG
GTCACATCTGGTGCCTAGTGATTCTCCATCTTTGCCTGTTGGTTCTTTGACTGTTGGTACCGAGGCCGTTGTCCCCACTGGTTCTTTAAATGTGTCCTTATCTGATGGTT
CTCTCACTGTGCCTGTCCATGAAGTTGGCACTTCGTCTCAGCGGTTTGTTCTGATCTTCCTCCTTCGGCTCCCACTGTTTCGGTTCCCTCTTCTTCTTATGTACAAAATT
CTCATTCGATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTTCGACAAACATGGAAGCTGATTCCACCGACACCGATGCAATGTCCGTCAGTCAATTAATTAATCCAGGAAACAAGATTTCGATCGTGAAGCTTACGGATGA
TTATTTCCTTTCGTGGAAATTTCAAGTACTCACTACTTTGGAAGGTCACGGATTAGAGTCGTACATTGAAGATGAAATTGATCCTCCTCTGCAATTTATTCAGGTCATTA
ATGGAACCTCTACTAGTTCGAAATTGAACCCGATTTTTACTAAGTGGAAACGACAGGATAAATTGATTTCATCTTGGTTGCTCGGCTCCATGTCTGAGGATTTTCTTGAA
CAAATGCTACATTGCAAGTCTGCTAGAGAAATTTGGACCTGTTTATTACAGATTTTTATTTCTCGCAATCTTGCACAAGTAATGAAAATTAAATCGAAGTTGCATAATCT
CCAAAAAAGGAATGACAGCAAAAAGGTTGTGGTGAATTCGGATGGCACTCCTCCATCGGCTAATCTCCTTACTCATGCTCCTACTATGGGAAAGGAGAATGAGAATCCTA
TATATTCTAATGTTCCTCAGTATACTTCTGGTTCTAATAATAGGACTCGCGGTGCTACTAATCATTTGAGGAACAATCTTACCAATCTGTCTATTGGTACAGAATACACT
GGAGGAAACCAGGACCACCGTACTACCATTCTTCTCCAAGGGACTCTGCATGATGGACTGTACCGGTTTCATCTTTCTCCTCTTTCTTCTGCTCCTATGTCTACCGCTAG
CCCTTCTTCTCAAGTCTTGTCTCCAACACCAGCTGCTCTGTTTTCGTCTTCTACCTCCTTGTCCCCTGCTGTGTCTCCTTCTCCTATTGATTTGTGGCATAGGCAACTTG
GATTTCCCTATTCCTCTGTTGTCCAACTCACCATCACCTACTTTAGCTGTTTCTTTCCCCCAATCGCTGCACCTATCCCCTCTGTATCTGGTTCTTCTCCAGCTATTCCT
GTATCAGCTGACAATCGTCCGACTTTTGCCGTTCGTACTGTTGCTTGTTCTATACCTGCTGCTGTCAGTTCTATTTCGGCTCCTCGTGTACCGTCTATGCCTCTTGATGG
GTCACATCTGGTGCCTAGTGATTCTCCATCTTTGCCTGTTGGTTCTTTGACTGTTGGTACCGAGGCCGTTGTCCCCACTGGTTCTTTAAATGTGTCCTTATCTGATGGTT
CTCTCACTGTGCCTGTCCATGAAGTTGGCACTTCGTCTCAGCGGTTTGTTCTGATCTTCCTCCTTCGGCTCCCACTGTTTCGGTTCCCTCTTCTTCTTATGTACAAAATT
CTCATTCGATGGTGA
Protein sequenceShow/hide protein sequence
METSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIFTKWKRQDKLISSWLLGSMSEDFLE
QMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRNDSKKVVVNSDGTPPSANLLTHAPTMGKENENPIYSNVPQYTSGSNNRTRGATNHLRNNLTNLSIGTEYT
GGNQDHRTTILLQGTLHDGLYRFHLSPLSSAPMSTASPSSQVLSPTPAALFSSSTSLSPAVSPSPIDLWHRQLGFPYSSVVQLTITYFSCFFPPIAAPIPSVSGSSPAIP
VSADNRPTFAVRTVACSIPAAVSSISAPRVPSMPLDGSHLVPSDSPSLPVGSLTVGTEAVVPTGSLNVSLSDGSLTVPVHEVGTSSQRFVLIFLLRLPLFRFPLLLMYKI
LIRW