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Moc04g06210 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g06210
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr4:4263573..4263996
RNA-Seq ExpressionMoc04g06210
SyntenyMoc04g06210
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KHN11113.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]5.5e-0940.57Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSL-------SVKIEENVKAMRLLTSLPDSWETMK
        MQ++D L  KK+++ L  +  DM  + WN +D QA+  IR+TL+  V   +  E T   L+KAL D          +K E+ VKA+  L+SLPDSW    
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSL-------SVKIEENVKAMRLLTSLPDSWETMK

Query:  TAVSNS
        TAVS+S
Subjt:  TAVSNS

KHN41430.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]1.4e-0738.74Show/hide
Query:  MQVKDLLTCKKIHKTLE-ERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD-----------SLSVKIEENVKAMRLLTSLPDS
        MQ++D L  KK+++ L   +  DM  + WN +D QA+  IR+TL+  V   +  E T   L+KAL D           S+ +K E+ VKA+ LL+SLP+S
Subjt:  MQVKDLLTCKKIHKTLE-ERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD-----------SLSVKIEENVKAMRLLTSLPDS

Query:  WETMKTAVSNS
        W    T VS+S
Subjt:  WETMKTAVSNS

RVW89488.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.4e-0737.62Show/hide
Query:  MQVKDLLTCKKIH-KTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSLSVKIEENVKAMRLLTSLPDSWETMKTAVSNS
        MQ++D L  +K+H   L  +   M  K W  +D Q +  IR+T+S  V   V KE T  +L+KAL +   +  ++ ++A+ +L SLP+SWE M+ A+SNS
Subjt:  MQVKDLLTCKKIH-KTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSLSVKIEENVKAMRLLTSLPDSWETMKTAVSNS

Query:  L
        +
Subjt:  L

VFQ90050.1 unnamed protein product, partial [Cuscuta campestris]8.0e-0837.86Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS
        MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK ++ AL +   S+ +K ++ V+A+ LL+SLPDSW    TAV+
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS

Query:  NSL
         S+
Subjt:  NSL

VFQ93322.1 unnamed protein product [Cuscuta campestris]1.4e-0737.25Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS
        MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK ++ AL +   S+ +K ++ V+A+ LL+SLPD+W    TAV+
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS

Query:  NS
        +S
Subjt:  NS

TrEMBL top hitse value%identityAlignment
A0A0B2PTN8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)2.7e-0940.57Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSL-------SVKIEENVKAMRLLTSLPDSWETMK
        MQ++D L  KK+++ L  +  DM  + WN +D QA+  IR+TL+  V   +  E T   L+KAL D          +K E+ VKA+  L+SLPDSW    
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSL-------SVKIEENVKAMRLLTSLPDSWETMK

Query:  TAVSNS
        TAVS+S
Subjt:  TAVSNS

A0A0B2S897 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)6.6e-0838.74Show/hide
Query:  MQVKDLLTCKKIHKTLE-ERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD-----------SLSVKIEENVKAMRLLTSLPDS
        MQ++D L  KK+++ L   +  DM  + WN +D QA+  IR+TL+  V   +  E T   L+KAL D           S+ +K E+ VKA+ LL+SLP+S
Subjt:  MQVKDLLTCKKIHKTLE-ERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD-----------SLSVKIEENVKAMRLLTSLPDS

Query:  WETMKTAVSNS
        W    T VS+S
Subjt:  WETMKTAVSNS

A0A0D3AR70 Uncharacterized protein3.0e-0833.33Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD--------------------------------SL
        MQ++D L  KK+H+ L ++   M    W  +D Q +  IR+TLS  V   VAKE TA+ L+K L D                                S+
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD--------------------------------SL

Query:  SVKIEENVKAMRLLTSLPDSWETMKTAVSNSL
         ++ ++ V+A+ LL SLP+SWE M+  VSNS+
Subjt:  SVKIEENVKAMRLLTSLPDSWETMKTAVSNSL

A0A484MMH6 Uncharacterized protein (Fragment)3.9e-0837.86Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS
        MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK ++ AL +   S+ +K ++ V+A+ LL+SLPDSW    TAV+
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS

Query:  NSL
         S+
Subjt:  NSL

A0A484MWS8 CCHC-type domain-containing protein6.6e-0837.25Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS
        MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK ++ AL +   S+ +K ++ V+A+ LL+SLPD+W    TAV+
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVS

Query:  NS
        +S
Subjt:  NS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29785.1 unknown protein1.2e-0434.85Show/hide
Query:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD
        M+++D L  KK+H+ L +++  M+   WN +  Q +  IR+T+S  +   VAKE +   L+K L D
Subjt:  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAAACTTTGGAGGAGAGACTAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGC
AAATATCAGAATGACACTATCAATGGGGGTATGCAGTCTCGTGGCAAAAGAGACGACCGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGTTTGAGTGTCAAGATTGAGG
AAAATGTGAAGGCTATGAGGTTGTTGACATCTTTGCCTGATAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAAACTTTGGAGGAGAGACTAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGC
AAATATCAGAATGACACTATCAATGGGGGTATGCAGTCTCGTGGCAAAAGAGACGACCGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGTTTGAGTGTCAAGATTGAGG
AAAATGTGAAGGCTATGAGGTTGTTGACATCTTTGCCTGATAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGCTATGA
Protein sequenceShow/hide protein sequence
MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSLSVKIEENVKAMRLLTSLPDSWETMKTAVSNSL