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Moc04g06220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g06220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:4264069..4264695
RNA-Seq ExpressionMoc04g06220
SyntenyMoc04g06220
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051598.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.1e-1536.55Show/hide
Query:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACI-EGNTTPVD-RSSEWV
        LV + +G+ + K +        +        +EC YCH+KGH KKYCRKLK D +N              NT+  ++TE+   + +G+   +  + S WV
Subjt:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACI-EGNTTPVD-RSSEWV

Query:  VDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRL
        +DS+AS+H  S R  F S+T G+ G+VRMGN   + + GIGDV L
Subjt:  VDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRL

RVW14266.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.2e-1537.24Show/hide
Query:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD
        ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N E        +     +G         +   + + ++WV+D
Subjt:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD

Query:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        S AS HV S   +F S++ G+ G VRMGN  +SKI G+GD+ L T
Subjt:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

RVW42505.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.2e-1537.24Show/hide
Query:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD
        ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N E        +     +G         +   + + ++WV+D
Subjt:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD

Query:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        S AS HV S   +F S++ G+ G VRMGN  +SKI G+GD+ L T
Subjt:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

RVW84195.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.2e-1537.24Show/hide
Query:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD
        ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N E        +     +G         +   + + ++WV+D
Subjt:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD

Query:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        S AS HV S   +F S++ G+ G VRMGN  +SKI G+GD+ L T
Subjt:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

TXG55926.1 hypothetical protein EZV62_017239 [Acer yangbiense]2.1e-1533.56Show/hide
Query:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACIEGNTTPVD-RSSEWVV
        LV + +G+ K K  G +     +   +    +EC++C +KGH KKYCR+LK DH+NE             + +  ++ + L   + +   +    + WV+
Subjt:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACIEGNTTPVD-RSSEWVV

Query:  DSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        DS AS+H  S R +F S+T+G+ G V+MGN  ++K  G+GDV L T
Subjt:  DSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

TrEMBL top hitse value%identityAlignment
A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-1637.24Show/hide
Query:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD
        ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N E        +     +G         +   + + ++WV+D
Subjt:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD

Query:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        S AS HV S   +F S++ G+ G VRMGN  +SKI G+GD+ L T
Subjt:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

A0A438E432 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-1637.24Show/hide
Query:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD
        ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N E        +     +G         +   + + ++WV+D
Subjt:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD

Query:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        S AS HV S   +F S++ G+ G VRMGN  +SKI G+GD+ L T
Subjt:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-1637.24Show/hide
Query:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD
        ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N E        +     +G         +   + + ++WV+D
Subjt:  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN-ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVD

Query:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        S AS HV S   +F S++ G+ G VRMGN  +SKI G+GD+ L T
Subjt:  SAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

A0A5A7U8K2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-1536.55Show/hide
Query:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACI-EGNTTPVD-RSSEWV
        LV + +G+ + K +        +        +EC YCH+KGH KKYCRKLK D +N              NT+  ++TE+   + +G+   +  + S WV
Subjt:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACI-EGNTTPVD-RSSEWV

Query:  VDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRL
        +DS+AS+H  S R  F S+T G+ G+VRMGN   + + GIGDV L
Subjt:  VDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRL

A0A5C7HIC1 Uncharacterized protein1.0e-1533.56Show/hide
Query:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACIEGNTTPVD-RSSEWVV
        LV + +G+ K K  G +     +   +    +EC++C +KGH KKYCR+LK DH+NE             + +  ++ + L   + +   +    + WV+
Subjt:  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE-------------NTLHYMSTEVLACIEGNTTPVD-RSSEWVV

Query:  DSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        DS AS+H  S R +F S+T+G+ G V+MGN  ++K  G+GDV L T
Subjt:  DSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.9e-1030.87Show/hide
Query:  ALVAQFKGKGKMKYN---GKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENENTLHYMSTEVLACIEGNTTPV-------------DRSSE
        AL+ + +G+   + +   G+   R K  + S S    C+ C++ GHFK+ C   ++  + E +         A ++ N   V                SE
Subjt:  ALVAQFKGKGKMKYN---GKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENENTLHYMSTEVLACIEGNTTPV-------------DRSSE

Query:  WVVDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT
        WVVD+AAS H    R  F  + AG+ G V+MGN   SKI GIGD+ + T
Subjt:  WVVDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAA
GAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACA
CTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAAT
TCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGAC
TGCGAAATTTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAA
GAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACA
CTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAAT
TCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGAC
TGCGAAATTTGTGTAA
Protein sequenceShow/hide protein sequence
MSAITLETEIGIESALVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENENTLHYMSTEVLACIEGNTTPVDRSSEWVVDSAASVHVN
SDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTTAKFV