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Moc04g06450 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g06450
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr4:4452659..4454315
RNA-Seq ExpressionMoc04g06450
SyntenyMoc04g06450
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]7.6e-132100Show/hide
Query:  MDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDI
        MDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDI
Subjt:  MDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDI

Query:  LIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGA
        LIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGA
Subjt:  LIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGA

Query:  HTLARMGMVSESFHVWVEEWLSDLSEVIAADRQAVVF
        HTLARMGMVSESFHVWVEEWLSDLSEVIAADRQAVVF
Subjt:  HTLARMGMVSESFHVWVEEWLSDLSEVIAADRQAVVF

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]3.3e-2635.22Show/hide
Query:  DWMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYL---------------QVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKV
        DW D + W   EEL VFLW++WN RN  +F N       ++  WV+ Y+                V QS Q+   +      +    + WCP     FK+
Subjt:  DWMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYL---------------QVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKV

Query:  NVDAAFKKGNFSAGLD-ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIR-HIVS
          DA+F   +F+AGL  I+IRD    VL SA  ++ HV+ V  AE LAA EG+ +A+E G+ P  +ETDS +++NL   D E  S+ G +   ++ H+ +
Subjt:  NVDAAFKKGNFSAGLD-ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIR-HIVS

Query:  SLHIGGGFSFVNREGNSGAHTLARMGMVSE
         L +   +SF  R GN+ AH LAR  + S+
Subjt:  SLHIGGGFSFVNREGNSGAHTLARMGMVSE

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]4.8e-2524.44Show/hide
Query:  SLIWGRDLLRAGLRWRVGNGEGVWIYADGWIPLAPSFLIQSPPLLPLNSKVSDL----------------------------------------------
        S++WGRDLL+ GLRWR+GNG+ V+IY D W+P  P+  I S P LPL S+VS L                                              
Subjt:  SLIWGRDLLRAGLRWRVGNGEGVWIYADGWIPLAPSFLIQSPPLLPLNSKVSDL----------------------------------------------

Query:  -------------------RTPS------------GLWDEDWMDRIK---W--------TG---------------------------------------
                           + PS            G W     ++IK   W        TG                                       
Subjt:  -------------------RTPS------------GLWDEDWMDRIK---W--------TG---------------------------------------

Query:  ------------------------LEELSVFLWAIWNARNQSMFTNGHGFLL---VNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVS--AWCPPLAP
                                 EEL V +W +WN RN   F +    +    + +V+W   Y   ++ A+  P     + GR    +   W PP   
Subjt:  ------------------------LEELSVFLWAIWNARNQSMFTNGHGFLL---VNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVS--AWCPPLAP

Query:  FFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHI
         +K+N DA+F   +  AGL I+I +    V+ +A  ++ ++  V +AE +AA EG+ LA E G+ P                  ED SE G +    ++ 
Subjt:  FFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHI

Query:  -VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVI
           SLH    F+FV REGN  AH LAR  ++   F +W+E+W  +L   +
Subjt:  -VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVI

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.7e-5248.71Show/hide
Query:  WMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLD
        W D + W  +  + V LWAIWNARNQ+      G  L ++V W  +YLQVYQ+AQ   S   L+  R  RV+ W PP AP  KVNVDAAF+K +F AG+ 
Subjt:  WMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLD

Query:  ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSG
        ++IRDST  V L+A+  +   SDV   E  A  EG+ LA+EAG I FQIETDS ++FNLL TDC D+SE+GVL S I+  +SS      FSF +R GN+ 
Subjt:  ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSG

Query:  AHTLARMGMVSESFHVWVEEWLSDLSEVIAAD
        AH LA++ + S    +WVEEW  ++S V+A D
Subjt:  AHTLARMGMVSESFHVWVEEWLSDLSEVIAAD

XP_030940128.1 uncharacterized protein LOC115965064 [Quercus lobata]6.9e-2428.2Show/hide
Query:  SLIWGRDLLRAGLRWRVGNGEGVWIYADGWIPLAPSFLIQSPPLLPLNSKVSDLRTPSGL-------------WDEDWMDRIKWTGLEELSVFLWAIWNA
        S++  RD++  G  WRVG+G  + I+   W+P   +  + SP      + VS+L  P+               W+ + + RI  +   + + ++W + + 
Subjt:  SLIWGRDLLRAGLRWRVGNGEGVWIYADGWIPLAPSFLIQSPPLLPLNSKVSDLRTPSGL-------------WDEDWMDRIKWTGLEELSVFLWAIWNA

Query:  RNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSD
         + S+  + +  L++ +   V        SA+  P        R   +  WCPP A FFK N DA    G+ SAG+ + IRD + +++++    I     
Subjt:  RNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSD

Query:  VTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLS
        V LAE LA    V  A E  L   + E DS ++   +     + +  G +   IR + S+LH    F  V R GN  AH L R  +++  F VWVEE  S
Subjt:  VTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLS

Query:  DLSEV
        DL +V
Subjt:  DLSEV

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077753.7e-132100Show/hide
Query:  MDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDI
        MDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDI
Subjt:  MDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDI

Query:  LIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGA
        LIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGA
Subjt:  LIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGA

Query:  HTLARMGMVSESFHVWVEEWLSDLSEVIAADRQAVVF
        HTLARMGMVSESFHVWVEEWLSDLSEVIAADRQAVVF
Subjt:  HTLARMGMVSESFHVWVEEWLSDLSEVIAADRQAVVF

A0A6J1CDQ4 uncharacterized protein LOC1110105331.6e-2635.22Show/hide
Query:  DWMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYL---------------QVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKV
        DW D + W   EEL VFLW++WN RN  +F N       ++  WV+ Y+                V QS Q+   +      +    + WCP     FK+
Subjt:  DWMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYL---------------QVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKV

Query:  NVDAAFKKGNFSAGLD-ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIR-HIVS
          DA+F   +F+AGL  I+IRD    VL SA  ++ HV+ V  AE LAA EG+ +A+E G+ P  +ETDS +++NL   D E  S+ G +   ++ H+ +
Subjt:  NVDAAFKKGNFSAGLD-ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIR-HIVS

Query:  SLHIGGGFSFVNREGNSGAHTLARMGMVSE
         L +   +SF  R GN+ AH LAR  + S+
Subjt:  SLHIGGGFSFVNREGNSGAHTLARMGMVSE

A0A6J1CIF1 uncharacterized protein LOC1110112371.3e-2334.36Show/hide
Query:  VNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVS--AWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEG
        + +V+W   Y+  ++ A   P       GR    +   W PP    +K+N DA+F   +  AGL I+IR+    V+ SA  ++ ++  V +AE + A EG
Subjt:  VNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVS--AWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEG

Query:  VCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHI-VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVI
        + LA + G+ P  +ETDSS++FNL     ED SE G +    ++    SLH    F+FV REGN  AH LAR  ++   F +W+E+W  +L   +
Subjt:  VCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHI-VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVI

A0A6J1DAR4 uncharacterized protein LOC1110189542.3e-2524.44Show/hide
Query:  SLIWGRDLLRAGLRWRVGNGEGVWIYADGWIPLAPSFLIQSPPLLPLNSKVSDL----------------------------------------------
        S++WGRDLL+ GLRWR+GNG+ V+IY D W+P  P+  I S P LPL S+VS L                                              
Subjt:  SLIWGRDLLRAGLRWRVGNGEGVWIYADGWIPLAPSFLIQSPPLLPLNSKVSDL----------------------------------------------

Query:  -------------------RTPS------------GLWDEDWMDRIK---W--------TG---------------------------------------
                           + PS            G W     ++IK   W        TG                                       
Subjt:  -------------------RTPS------------GLWDEDWMDRIK---W--------TG---------------------------------------

Query:  ------------------------LEELSVFLWAIWNARNQSMFTNGHGFLL---VNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVS--AWCPPLAP
                                 EEL V +W +WN RN   F +    +    + +V+W   Y   ++ A+  P     + GR    +   W PP   
Subjt:  ------------------------LEELSVFLWAIWNARNQSMFTNGHGFLL---VNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVS--AWCPPLAP

Query:  FFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHI
         +K+N DA+F   +  AGL I+I +    V+ +A  ++ ++  V +AE +AA EG+ LA E G+ P                  ED SE G +    ++ 
Subjt:  FFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHI

Query:  -VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVI
           SLH    F+FV REGN  AH LAR  ++   F +W+E+W  +L   +
Subjt:  -VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVI

A0A6J1DBJ7 uncharacterized protein LOC1110189731.3e-5248.71Show/hide
Query:  WMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLD
        W D + W  +  + V LWAIWNARNQ+      G  L ++V W  +YLQVYQ+AQ   S   L+  R  RV+ W PP AP  KVNVDAAF+K +F AG+ 
Subjt:  WMDRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLD

Query:  ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSG
        ++IRDST  V L+A+  +   SDV   E  A  EG+ LA+EAG I FQIETDS ++FNLL TDC D+SE+GVL S I+  +SS      FSF +R GN+ 
Subjt:  ILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSG

Query:  AHTLARMGMVSESFHVWVEEWLSDLSEVIAAD
        AH LA++ + S    +WVEEW  ++S V+A D
Subjt:  AHTLARMGMVSESFHVWVEEWLSDLSEVIAAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATACTGAAAAAGATAAAAAAAAAAAAAATCTCCCAATACCTCATTGGCTATATCAAACTACATGCAATCATCAGTCTCATTTGGGGGCGAGATCTTCTT
CGGGCTGGGCTTCGCTGGCGTGTGGGTAATGGCGAAGGGGTCTGGATCTATGCTGATGGGTGGATCCCTCTTGCTCCGTCCTTTCTTATTCAGTCTCCTCCTCTG
TTACCTCTTAATAGCAAGGTAAGTGATCTCCGAACCCCGTCTGGCCTTTGGGATGAAGATTGGATGGATCGAATCAAGTGGACGGGGCTGGAGGAACTGTCGGTT
TTTCTTTGGGCGATTTGGAATGCTCGAAATCAATCTATGTTCACCAATGGCCATGGTTTTCTTCTGGTCAACATGGTTGATTGGGTGGCCGATTATTTGCAGGTG
TATCAATCAGCACAGGAGGGTCCTTCACTTCCGCTCCTGTTGGACGGGCGGGGTGGCCGTGTGTCCGCGTGGTGTCCACCTTTGGCTCCTTTTTTTAAAGTGAAT
GTTGATGCTGCGTTCAAAAAGGGGAATTTCTCTGCCGGCTTGGATATTTTGATTCGTGACTCCACTGTGAATGTTTTGTTATCAGCTATGTGCTTTATAACCCAT
GTTTCTGATGTTACTTTGGCAGAATGTTTGGCTGCCCAAGAGGGTGTCTGTCTGGCCATAGAAGCGGGTCTCATTCCTTTTCAAATTGAGACTGATTCTAGCCAG
GTTTTTAACTTGCTGCGGACGGACTGTGAAGATGAATCGGAGATTGGTGTTCTTGCTTCAAGTATTAGACACATTGTCTCTTCTTTGCATATTGGAGGCGGGTTC
AGTTTCGTCAATCGCGAAGGAAATTCTGGCGCCCATACGTTGGCTCGGATGGGCATGGTTTCCGAGTCCTTTCACGTCTGGGTTGAGGAGTGGCTGTCAGATCTT
TCTGAAGTTATTGCTGCAGATCGTCAAGCGGTGGTGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATACTGAAAAAGATAAAAAAAAAAAAAATCTCCCAATACCTCATTGGCTATATCAAACTACATGCAATCATCAGTCTCATTTGGGGGCGAGATCTTCTT
CGGGCTGGGCTTCGCTGGCGTGTGGGTAATGGCGAAGGGGTCTGGATCTATGCTGATGGGTGGATCCCTCTTGCTCCGTCCTTTCTTATTCAGTCTCCTCCTCTG
TTACCTCTTAATAGCAAGGTAAGTGATCTCCGAACCCCGTCTGGCCTTTGGGATGAAGATTGGATGGATCGAATCAAGTGGACGGGGCTGGAGGAACTGTCGGTT
TTTCTTTGGGCGATTTGGAATGCTCGAAATCAATCTATGTTCACCAATGGCCATGGTTTTCTTCTGGTCAACATGGTTGATTGGGTGGCCGATTATTTGCAGGTG
TATCAATCAGCACAGGAGGGTCCTTCACTTCCGCTCCTGTTGGACGGGCGGGGTGGCCGTGTGTCCGCGTGGTGTCCACCTTTGGCTCCTTTTTTTAAAGTGAAT
GTTGATGCTGCGTTCAAAAAGGGGAATTTCTCTGCCGGCTTGGATATTTTGATTCGTGACTCCACTGTGAATGTTTTGTTATCAGCTATGTGCTTTATAACCCAT
GTTTCTGATGTTACTTTGGCAGAATGTTTGGCTGCCCAAGAGGGTGTCTGTCTGGCCATAGAAGCGGGTCTCATTCCTTTTCAAATTGAGACTGATTCTAGCCAG
GTTTTTAACTTGCTGCGGACGGACTGTGAAGATGAATCGGAGATTGGTGTTCTTGCTTCAAGTATTAGACACATTGTCTCTTCTTTGCATATTGGAGGCGGGTTC
AGTTTCGTCAATCGCGAAGGAAATTCTGGCGCCCATACGTTGGCTCGGATGGGCATGGTTTCCGAGTCCTTTCACGTCTGGGTTGAGGAGTGGCTGTCAGATCTT
TCTGAAGTTATTGCTGCAGATCGTCAAGCGGTGGTGTTTTAA
Protein sequenceShow/hide protein sequence
MVILKKIKKKKISQYLIGYIKLHAIISLIWGRDLLRAGLRWRVGNGEGVWIYADGWIPLAPSFLIQSPPLLPLNSKVSDLRTPSGLWDEDWMDRIKWTGLEELSV
FLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITH
VSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDL
SEVIAADRQAVVF