CuGenDBv2

Gene ID	Moc04g07290
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr4:5167929..5170158
RNA-Seq Expression	Moc04g07290
Synteny	Moc04g07290
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

BBH02880.1 hypothetical protein Prudu_013587 [Prunus dulcis]

2.1e-22

37.57

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        +AKE     L+ AL   YEK SA+ K+ L  + FN+ M E  SV  H+NEL  ++ +L  +G++ DEEV+A+ LL+SL +SW    TAVS+S G N L F
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGR----GISSGEVEYFYCHKKGHVKHFCRSSKK
          + D  LSEE  R+     +++S    E       +  G+ + NY G+ + R ++ R      SS  VE + C K GH K+ C+S+ K
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGR----GISSGEVEYFYCHKKGHVKHFCRSSKK

CAN81130.1 hypothetical protein VITISV_003944 [Vitis vinifera]

1.2e-22

38.83

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        V KE    +L+KAL   YEK SAN K+ L TK FN+ M E+ SV  H+NE   I+N+L  + +  D+E++A+ +L SL +SWE M+ AVSNS G   LK+
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + I D  L+EE  R+       TSG+ + +   L  + +G ++ +  G+   R    NR +  S  +V+ + C K GH K  C+S KK
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

RVW25839.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.1e-23

39.36

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        V KE    +L+KAL   YEK SAN K+ L  K FN+ M E+ SV  H+NE   I+N+L  + +  D+E++A+ +L SL +SWE M+ AVSNS+G   LK+
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + I D  L+EE  R+       TSG+ + +   L  + +G +K +  G+   R    NR +  SS +V+ + C K GH K  C+S KK
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

RVW80140.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.1e-22

38.83

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        V KE    +L+KAL   YEK SAN K+ L  K FN+ M E+ SV  H+NE   I+N+L  + +  D+E++A+ +L SL +SWE M+ AVSNS G   LK+
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + I D  L+EE  R+       TSG+ + +   L  + +G ++ +  G+   R    NR +  SS +V+ + C K GH K  C+S KK
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

RVW95743.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.6e-22

37.63

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        V KE +  +L+KAL D YEK SAN K+ L  K FN+ M E+ SV  H+NE   I+N+L  + +  ++E++ + +L SL +SWE M+ AVSNS+G   LK+
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRK-LGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + I D  L+EE  R+  G+   S S    E +     +N  + + N    +    NR +  S  +V+ + C K GH K  C+S KK
Subjt:  SVIYDAALSEEAWRK-LGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

TrEMBL top hits

e value

%identity

Alignment

A0A0D3CS45 Uncharacterized protein

4.5e-23

39.36

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        VAKE + + L+K L D YEK SAN K+ L  K F++ MEE   V +H+NE   I N+L  + ++ ++EV+A+ LL SL +SWE M+ AVSNS+G   LKF
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKS---KMNYTGKQQHRYNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + + D  L+EE  R++    ASTS A N        +N+G++        G+ + R  RG+       E + C K GH+K  CR+  K
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKS---KMNYTGKQQHRYNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

A0A438CRS1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-23

39.36

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        V KE    +L+KAL   YEK SAN K+ L  K FN+ M E+ SV  H+NE   I+N+L  + +  D+E++A+ +L SL +SWE M+ AVSNS+G   LK+
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + I D  L+EE  R+       TSG+ + +   L  + +G +K +  G+   R    NR +  SS +V+ + C K GH K  C+S KK
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

A0A438IG76 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.6e-23

37.63

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        V KE +  +L+KAL D YEK SAN K+ L  K FN+ M E+ SV  H+NE   I+N+L  + +  ++E++ + +L SL +SWE M+ AVSNS+G   LK+
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRK-LGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + I D  L+EE  R+  G+   S S    E +     +N  + + N    +    NR +  S  +V+ + C K GH K  C+S KK
Subjt:  SVIYDAALSEEAWRK-LGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

A0A4Y1RCM7 CCHC-type domain-containing protein

1.0e-22

37.57

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        +AKE     L+ AL   YEK SA+ K+ L  + FN+ M E  SV  H+NEL  ++ +L  +G++ DEEV+A+ LL+SL +SW    TAVS+S G N L F
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGR----GISSGEVEYFYCHKKGHVKHFCRSSKK
          + D  LSEE  R+     +++S    E       +  G+ + NY G+ + R ++ R      SS  VE + C K GH K+ C+S+ K
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGR----GISSGEVEYFYCHKKGHVKHFCRSSKK

A5BGX3 Uncharacterized protein

5.8e-23

38.83

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        V KE    +L+KAL   YEK SAN K+ L TK FN+ M E+ SV  H+NE   I+N+L  + +  D+E++A+ +L SL +SWE M+ AVSNS G   LK+
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK
        + I D  L+EE  R+       TSG+ + +   L  + +G ++ +  G+   R    NR +  S  +V+ + C K GH K  C+S KK
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHR---YNRGRGISSGEVEYFYCHKKGHVKHFCRSSKK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.9e-08

26.46

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Query:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF
        +  E  A+ +   L+  Y  ++   K+ L  + + +HM E T+  SH+N    +  +L  +GVKI+EE KA+ LL SL  S++ + T + +  G  +++ 
Subjt:  VAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKF

Query:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKS---KMNYTGKQQHRYNRGRGISSGEVEYFY-CHKKGHVKHFCRSSKK
          +  A L  E  RK           +N+ ++ L+ + +G+S     N  G+   R  + +  S   V   Y C++ GH K  C + +K
Subjt:  SVIYDAALSEEAWRKLGKMFASTSGAKNEVESFLVAQNKGKS---KMNYTGKQQHRYNRGRGISSGEVEYFY-CHKKGHVKHFCRSSKK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGTCTCATTCTCTCCTTTTGGCTCTCAATGCCATTGCCATCTTCATCTTCTTCCTCTTACTCTCCTCCATGCAAGTCCACTCCTCAAGACCTCTCAAACATCATCC
TTCTCCGTCGGTGACTTCTCCGGCGAAACTTCTTCACTATGTGTTGGGATTGGTGGAGCCAAAACGATATCGGAACGAGCTAGGGATGAGTCGGGATCAAGTCAGGATGC
GTCGGGGTAGAAGCAGAGATGAAAAACAGAGGAAACGAGCGCTGCAGTCTAGAGAGGTCAAGGATGCAGCGCCGTGGCGCTACAGAAGGCGTCACAGTGCTGTCAAAGGT
CTGGTGGCGAAAGAGACTTTAGCGAAGGAACTATTGAAGGCCTTGCAAGACAGGTATGAAAAACGTTCTGCCAATATAAAAATACTTCTATGGACGAAGTATTTTAATAT
CCACATGGAGGAGAGTACCTCGGTGAATTCCCACATTAATGAGCTCACTGATATATCGAATAAATTAGAAGGGATGGGTGTCAAGATTGATGAGGAGGTGAAGGCTATGA
GGCTGTTGACATCTTTGCATGACAGTTGGGAGACGATGAAGACCGCGGTGTCAAATTCATTAGGGGATAATAGCTTGAAATTTTCAGTTATTTATGATGCCGCCTTATCT
GAGGAAGCTTGGAGAAAATTAGGAAAAATGTTTGCATCTACTTCAGGGGCAAAAAACGAGGTTGAATCATTTTTGGTAGCTCAGAACAAAGGAAAGAGCAAGATGAACTA
CACAGGGAAGCAGCAGCATAGATACAACAGGGGTCGTGGGATTTCCAGTGGAGAAGTGGAGTATTTTTACTGCCATAAGAAGGGACACGTTAAACACTTTTGCAGATCTT
CAAAGAAGATTTTGAGAAGGGGAACAGTGATATTGTAA

mRNA sequence

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Protein sequence

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MKSHSLLLALNAIAIFIFFLLLSSMQVHSSRPLKHHPSPSVTSPAKLLHYVLGLVEPKRYRNELGMSRDQVRMRRGRSRDEKQRKRALQSREVKDAAPWRYRRRHSAVKG
LVAKETLAKELLKALQDRYEKRSANIKILLWTKYFNIHMEESTSVNSHINELTDISNKLEGMGVKIDEEVKAMRLLTSLHDSWETMKTAVSNSLGDNSLKFSVIYDAALS
EEAWRKLGKMFASTSGAKNEVESFLVAQNKGKSKMNYTGKQQHRYNRGRGISSGEVEYFYCHKKGHVKHFCRSSKKILRRGTVIL

Moc04g07290 (gene) of Bitter gourd (OHB3-1) v2 genome