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Moc04g07320 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g07320
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:5179782..5185085
RNA-Seq ExpressionMoc04g07320
SyntenyMoc04g07320
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7806995.1 uncharacterized protein G2W53_039156 [Senna tora]2.0e-0635.54Show/hide
Query:  SSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRS-TSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI
        SS R S H      W PP+   LK+N DA  RS  +TGFG  IRN    ++GA +   P   S  L+E   +  G++FA   +CS IEVE D    +  +
Subjt:  SSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRS-TSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI

Query:  RGE---LNTLGFTLEFLIHLA
          +   L+ LG  LE +  ++
Subjt:  RGE---LNTLGFTLEFLIHLA

KAF7814608.1 putative ZmL1 non-LTR retrotransposon protein [Senna tora]2.6e-0641.98Show/hide
Query:  SQQWWPPSGTSLKLNTDAAYRSTSTG-FGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESD
        S +W PP  +++K+N DA Y + S G  G  IRN N   + AK + IP   S   +E   I +G+KFA+  NC++IEVE D
Subjt:  SQQWWPPSGTSLKLNTDAAYRSTSTG-FGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESD

KAF7831568.1 uncharacterized protein G2W53_013901 [Senna tora]1.8e-0738.26Show/hide
Query:  SSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRS-TSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI
        SS R S H      W PP+   LK+N DA  RS  +TGFG  IRN    ++GA +   P   S  L+E   +  G++FAR  +CS IEVE D    +  +
Subjt:  SSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRS-TSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLI

Query:  RGE---LNTLGFTLE
          +   L+ LG  LE
Subjt:  RGE---LNTLGFTLE

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]3.9e-1543.09Show/hide
Query:  SRGNKRKRIKKMAGIVSSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCS
        S+  + KRI        SP+ S  P  S +W PP  +++K+N+DAA RSTSTG G+ IR+    L+ AKS+ +P  L+PL  EIR I + LK A S + +
Subjt:  SRGNKRKRIKKMAGIVSSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCS

Query:  RIEVESDSLVAIHLIRGELNTLG
        R+ VESD   AI L++G+L ++G
Subjt:  RIEVESDSLVAIHLIRGELNTLG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.4e-2056.07Show/hide
Query:  SPRV-SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR
        SPR  S H    Q W P S  SLKLNTDAA R  ST FG  IR+S+ +L+ A S+ +P+ LSPLL EIR I +GLKFA ++N + +EVESDSL+AI LIR
Subjt:  SPRV-SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR

Query:  GELNTLG
         E++T G
Subjt:  GELNTLG

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047861.9e-1543.09Show/hide
Query:  SRGNKRKRIKKMAGIVSSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCS
        S+  + KRI        SP+ S  P  S +W PP  +++K+N+DAA RSTSTG G+ IR+    L+ AKS+ +P  L+PL  EIR I + LK A S + +
Subjt:  SRGNKRKRIKKMAGIVSSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCS

Query:  RIEVESDSLVAIHLIRGELNTLG
        R+ VESD   AI L++G+L ++G
Subjt:  RIEVESDSLVAIHLIRGELNTLG

A0A6J1DPU1 uncharacterized protein LOC1110224268.0e-0634.19Show/hide
Query:  CLSRGNKRKRIKKMAGIVSSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTN
        C +  N    +     I  +P     PR +    PP G  +K+NTDAA  +  +G GV +R+ N  ++ A  +      +PLL EI  I +GL+ A    
Subjt:  CLSRGNKRKRIKKMAGIVSSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTN

Query:  CSRIEVESDSLVAIHLI
          R+ VESDSL A++LI
Subjt:  CSRIEVESDSLVAIHLI

A0A6J1DX30 uncharacterized protein LOC1110248741.2e-2056.07Show/hide
Query:  SPRV-SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR
        SPR  S H    Q W P S  SLKLNTDAA R  ST FG  IR+S+ +L+ A S+ +P+ LSPLL EIR I +GLKFA ++N + +EVESDSL+AI LIR
Subjt:  SPRV-SPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIR

Query:  GELNTLG
         E++T G
Subjt:  GELNTLG

A0A6J1DZK3 uncharacterized protein LOC1110249682.1e-0636.52Show/hide
Query:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRGELNTLGF
        PR + +W PP G  +K+NTDAA     +G GV +R  N  ++GA  +      +PLL +I  I +GL  A      R+ VE+DSL A++LI  +    G 
Subjt:  PRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRGELNTLGF

Query:  TLEFLIHL-AFANDF
         + ++  + AFA DF
Subjt:  TLEFLIHL-AFANDF

M5XQU3 RNase H domain-containing protein8.0e-0636.45Show/hide
Query:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTS--TGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRGEL
        SPHP     W PP  + +K+NTD +++S S   G GV IR    + IG  +  +P A SPL+ E+  +  GL  A+  N   + VESDS VAI+ +  ++
Subjt:  SPHPRTSQQWWPPSGTSLKLNTDAAYRSTS--TGFGVAIRNSNRALIGAKSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRGEL

Query:  NTLGFTL
        ++  + L
Subjt:  NTLGFTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCTGTTGGAGTCGCTGCCGCGTGCCGCCATTCAGATCGTCGCCGCATGCTGGGGTTTCGTTTCATGGGCAGTGGCTGTTTGGTTTTTTTTTTTTCTTTTTTTTGA
AAGAAGTGGCTGCTTGTCAAGAGGGAACAAGAGGAAGAGGATAAAGAAAATGGCTGGAATCGTTTCTTCACCTCGAGTATCTCCACATCCTCGAACCTCTCAACAATGGT
GGCCTCCATCTGGAACCTCTTTGAAGTTAAATACTGATGCTGCTTACCGGAGCACCTCAACTGGATTCGGAGTTGCTATTCGAAACTCAAACAGAGCTCTCATCGGAGCA
AAATCCTTACATATACCTTACGCATTATCGCCCTTGCTTATTGAAATCAGAGACATCTTTGATGGTTTAAAGTTCGCCCGCTCCACAAATTGTTCACGAATTGAAGTTGA
ATCAGACTCTTTGGTGGCTATCCATTTGATTCGGGGAGAATTGAATACCTTAGGGTTTACTCTCGAGTTTCTAATCCATTTGGCTTTTGCCAATGACTTTTATACCTTAA
GTTTAGTCGGCACCCTTGGCACCTCAGGATTCTCTTCCCTGGTTTCACTAACTTGCTTCTTGCTTATCGGCCTGCTTTTAGGTTTGACGCGGTTCGAGGTTTGTCGTTTC
CTCTTATCTTCAGTTTACTTCGTGCATGGTTGGTTGTCTCCCAAACTCCTTCAATCTTTGGAGCATTACCCTTTCGTGGATCGTGAACAAGCACTGGTTGCTCCATCTCA
TGTTACTCGAGTTTTTGCAAAAGCAGGGACATGCTTTGGTGCATTCCTTCAATCTTCTTTTCTAAGGCAGCCATCTTGTCACCCTGTTGATCCAGAACCTCGGTCGGTTT
GTCTTTCTGTCCGAGAACTGATCGGGCAGTACCCTTCTGTCCATCATCTGGTCGGTCGGTATCCTTTGAATGTTGTGGACTCCTTCCCGAACTCATCGTCCCCAAAGACA
GCGCCAATTGTTGATGCAGAAATTTGGCCTGCTAGGATTCCGCCAAATTCGCACCAATCTTCTAGATTAAAGGGATCGACGAGACTTGCAAAACAGAATAGCATTAAAGA
CTGGTGTGGCTCTTGCCACACAGATTCCGATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCTGTTGGAGTCGCTGCCGCGTGCCGCCATTCAGATCGTCGCCGCATGCTGGGGTTTCGTTTCATGGGCAGTGGCTGTTTGGTTTTTTTTTTTTCTTTTTTTTGA
AAGAAGTGGCTGCTTGTCAAGAGGGAACAAGAGGAAGAGGATAAAGAAAATGGCTGGAATCGTTTCTTCACCTCGAGTATCTCCACATCCTCGAACCTCTCAACAATGGT
GGCCTCCATCTGGAACCTCTTTGAAGTTAAATACTGATGCTGCTTACCGGAGCACCTCAACTGGATTCGGAGTTGCTATTCGAAACTCAAACAGAGCTCTCATCGGAGCA
AAATCCTTACATATACCTTACGCATTATCGCCCTTGCTTATTGAAATCAGAGACATCTTTGATGGTTTAAAGTTCGCCCGCTCCACAAATTGTTCACGAATTGAAGTTGA
ATCAGACTCTTTGGTGGCTATCCATTTGATTCGGGGAGAATTGAATACCTTAGGGTTTACTCTCGAGTTTCTAATCCATTTGGCTTTTGCCAATGACTTTTATACCTTAA
GTTTAGTCGGCACCCTTGGCACCTCAGGATTCTCTTCCCTGGTTTCACTAACTTGCTTCTTGCTTATCGGCCTGCTTTTAGGTTTGACGCGGTTCGAGGTTTGTCGTTTC
CTCTTATCTTCAGTTTACTTCGTGCATGGTTGGTTGTCTCCCAAACTCCTTCAATCTTTGGAGCATTACCCTTTCGTGGATCGTGAACAAGCACTGGTTGCTCCATCTCA
TGTTACTCGAGTTTTTGCAAAAGCAGGGACATGCTTTGGTGCATTCCTTCAATCTTCTTTTCTAAGGCAGCCATCTTGTCACCCTGTTGATCCAGAACCTCGGTCGGTTT
GTCTTTCTGTCCGAGAACTGATCGGGCAGTACCCTTCTGTCCATCATCTGGTCGGTCGGTATCCTTTGAATGTTGTGGACTCCTTCCCGAACTCATCGTCCCCAAAGACA
GCGCCAATTGTTGATGCAGAAATTTGGCCTGCTAGGATTCCGCCAAATTCGCACCAATCTTCTAGATTAAAGGGATCGACGAGACTTGCAAAACAGAATAGCATTAAAGA
CTGGTGTGGCTCTTGCCACACAGATTCCGATGCTTAA
Protein sequenceShow/hide protein sequence
MPLLESLPRAAIQIVAACWGFVSWAVAVWFFFFLFFERSGCLSRGNKRKRIKKMAGIVSSPRVSPHPRTSQQWWPPSGTSLKLNTDAAYRSTSTGFGVAIRNSNRALIGA
KSLHIPYALSPLLIEIRDIFDGLKFARSTNCSRIEVESDSLVAIHLIRGELNTLGFTLEFLIHLAFANDFYTLSLVGTLGTSGFSSLVSLTCFLLIGLLLGLTRFEVCRF
LLSSVYFVHGWLSPKLLQSLEHYPFVDREQALVAPSHVTRVFAKAGTCFGAFLQSSFLRQPSCHPVDPEPRSVCLSVRELIGQYPSVHHLVGRYPLNVVDSFPNSSSPKT
APIVDAEIWPARIPPNSHQSSRLKGSTRLAKQNSIKDWCGSCHTDSDA