CuGenDBv2

Gene ID	Moc04g07420
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	SWIB domain-containing protein
Genome location	chr4:5249623..5251492
RNA-Seq Expression	Moc04g07420
Synteny	Moc04g07420
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	IPR003121 - SWIB/MDM2 domain IPR019835 - SWIB domain IPR036885 - SWIB/MDM2 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-49

81.06

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

XP_022148689.1 uncharacterized protein LOC111017291 [Momordica charantia]

6.8e-64

100

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Query:  MAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP
        MAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP
Subjt:  MAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP

Query:  DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
Subjt:  DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]

2.1e-49

81.06

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

XP_022972543.1 uncharacterized protein LOC111471082 [Cucurbita maxima]

6.8e-48

80.3

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL+ARASA  SS+KH  QLP  NLRF R +TFA+AS+QATAS R+PRGIMKPR ISPEMQALVG PEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]

7.3e-50

81.82

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRTQALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P++KKII+CDEKLKKIFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D4Q4 uncharacterized protein LOC111017291

3.3e-64

100

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Query:  MAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP
        MAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP
Subjt:  MAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP

Query:  DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
Subjt:  DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

A0A6J1EIX1 uncharacterized protein LOC111434699

7.4e-48

77.27

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL  RASA  SS+KH  Q PP+NL F R VTFA+ S+QATAS+R+PRGIMKP+ ISPEMQALVGVPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P +KK+I+CDEKLK IFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

A0A6J1GL33 uncharacterized protein LOC111455244

1.0e-49

81.06

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

A0A6J1IAA1 uncharacterized protein LOC111471082

3.3e-48

80.3

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL+ARASA  SS+KH  QLP  NLRF R +TFA+AS+QATAS R+PRGIMKPR ISPEMQALVG PEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

A0A6J1JNZ3 uncharacterized protein LOC111486197

7.4e-48

77.27

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL  RASA  SS+KH  Q PP+NL F R VTFA+ S+QATAS+R+PRGIMKP+ ISPEMQALVGVPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        +P +KK+I+CDEKLK IFGGKDEVGFL+IAGL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

SwissProt top hits

e value

%identity

Alignment

O74503 Upstream activation factor subunit spp27

5.0e-09

43.64

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Query:  KPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIF
        KP  +SP++   +G+ ++SR Q +K +W +IK H+LQ P++K+ I+CD+KLK +F
Subjt:  KPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIF

Q05024 Protein TRI1

6.5e-09

48.15

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Query:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGK
        +S  +Q  +G  E+ RTQ +K+IW +IKEH+LQ P +++ I+CDEK++ IFG K
Subjt:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGK

Q08747 Upstream activation factor subunit UAF30

1.9e-08

47.17

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Query:  SISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFG
        ++S  + +L+G  E++RT+ ++ +W +IK HNLQ P+NKK I+CDEKL+ I G
Subjt:  SISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFG

Arabidopsis top hits

e value

%identity

Alignment

AT1G31760.1 SWIB/MDM2 domain superfamily protein

1.4e-14

42.39

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Query:  RPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        R +    A+ +A     + +GI K R +S ++ +  G  E++R  ALK +W ++K HNLQ P NKK I CD+KLK IF GKD+VG  +I  L
Subjt:  RPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

AT2G14880.1 SWIB/MDM2 domain superfamily protein

8.1e-31

64.55

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Query:  SSLKHAPQLPPANLRFVRPVTFATASDQATA-SRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKD
        SSL+ A   P A LR VR VT AT S + TA ++R PRGIMKPR +SPEMQ +V +PEI+RTQALK IW +IKEH+LQ P NK+ I+CDEKLKKIF G+D
Subjt:  SSLKHAPQLPPANLRFVRPVTFATASDQATA-SRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKD

Query:  EVGFLDIAGL
         VGFL+IA L
Subjt:  EVGFLDIAGL

AT2G35605.1 SWIB/MDM2 domain superfamily protein

2.1e-15

48.24

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Query:  ASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
        AS     + R+  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ P NK+ I+CDE+LK IF GKD VGFL+I+ L
Subjt:  ASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

AT3G03590.1 SWIB/MDM2 domain superfamily protein

1.6e-15

40.77

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Query:  FSGEPALL--VARASASSLKHAPQLPPANLRFVRPVTFATASDQA---TASRRKPR--GIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP
        F G  +LL   +RA++S +       PA     +P   A    +A   + +++ PR  GI K   +SP +   +G  E SRT A+K IWT+IK H+LQ P
Subjt:  FSGEPALL--VARASASSLKHAPQLPPANLRFVRPVTFATASDQA---TASRRKPR--GIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRP

Query:  DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
         +K+ I CDE LK IF GKD+VGFL+I+ L
Subjt:  DNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

AT4G34290.1 SWIB/MDM2 domain superfamily protein

1.2e-29

58.33

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Query:  FVSTFFSGEPA-LLVARASASSLKHAPQLPPANLRFVRPVTFATA--SDQATASR-RKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        F +TF   + A L  +  S SSL+ +P   P NLR VR VT A A  SD  T ++ R+PRGIMKPR +S  MQ +VGVPEI RTQALK IW +IKEH+LQ
Subjt:  FVSTFFSGEPA-LLVARASASSLKHAPQLPPANLRFVRPVTFATA--SDQATASR-RKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL
         P NK+ I+CDEKLKKIF GK+ VGFL+IA L
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGL

Sequences

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CDS sequence

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ATGGCTTTCGTCTCCACATTTTTCTCCGGCGAACCGGCGCTGCTCGTCGCCAGAGCTTCCGCCTCCTCCCTCAAGCACGCTCCTCAACTCCCTCCGGCTAATTTGCGCTT
TGTCCGCCCCGTGACCTTCGCCACGGCGTCGGACCAAGCCACTGCCTCCCGCCGGAAGCCTCGAGGCATTATGAAGCCCCGGAGCATATCGCCGGAGATGCAAGCGCTCG
TCGGCGTTCCGGAGATTTCCCGTACCCAAGCCCTCAAGGTCATTTGGACTCACATAAAAGAACACAATCTTCAGAGACCCGACAACAAGAAGATCATAGTTTGCGACGAG
AAGCTGAAGAAAATATTCGGAGGGAAAGATGAAGTCGGGTTTTTGGATATTGCAGGTCTCAATCTGGTTGATATGGATGGCTGCAGTTTCAGAGCCCCCCTTTATGCTTG
GTAG

mRNA sequence

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Protein sequence

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MAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDE
KLKKIFGGKDEVGFLDIAGLNLVDMDGCSFRAPLYAW

Moc04g07420 (gene) of Bitter gourd (OHB3-1) v2 genome