CuGenDBv2

Gene ID	Moc04g07690
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages;
Genome location	chr4:5510300..5511336
RNA-Seq Expression	Moc04g07690
Synteny	Moc04g07690
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component)
InterPro domains	IPR008796 - Photosystem I reaction centre subunit N, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136934.1 uncharacterized protein LOC101214221 [Cucumis sativus]

1.3e-39

77.52

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAA--ASDIGRRGLLFS----AVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDY
        MSSIGQSILMALAVT+NKFASSNVQSV RN++ A A  +S IGRR LL S    A AAA + VDSRTELLKRYLKKSE+NKEKNDKERL+SYYKRNYKDY
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAA--ASDIGRRGLLFS----AVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDY

Query:  FEFVEGSVRNKSELSETEKDIIEWLRRNK
        FEFVEGSV+NK+ELSE EK I+EWL+R+K
Subjt:  FEFVEGSVRNKSELSETEKDIIEWLRRNK

XP_008455049.1 PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]

1.4e-41

78.91

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAV-----AAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYF
        MSSIGQSILMALAVT+NKFASSNVQSV RN++ A  +S IGRR LL S V     AAA A VDSRTELLKRYLKKSE+NKEKNDKERL+SYYKRNYKDYF
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAV-----AAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYF

Query:  EFVEGSVRNKSELSETEKDIIEWLRRNK
        EFVEGSV+NK+ELSE EK I+EWL+RNK
Subjt:  EFVEGSVRNKSELSETEKDIIEWLRRNK

XP_022148828.1 uncharacterized protein LOC111017388 isoform X1 [Momordica charantia]

8.2e-55

100

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEG
        MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEG
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEG

Query:  SVRNKSELSETEKDIIEWLRRNK
        SVRNKSELSETEKDIIEWLRRNK
Subjt:  SVRNKSELSETEKDIIEWLRRNK

XP_022989008.1 uncharacterized protein LOC111486201 [Cucurbita maxima]

7.0e-38

73.85

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ-------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKD
        MSSIGQ+ILMALA+T+N+FASSNVQSV RN+       +  +A+SDI RRGLL SA  AA   VDSRTELLKRYLKKSE+NKEKNDKERL+S+YKRNYKD
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ-------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKD

Query:  YFEFVEGSVRNKSELSETEKDIIEWLRRNK
        YFEFVEGS++NK ELSE EK IIEWL+RNK
Subjt:  YFEFVEGSVRNKSELSETEKDIIEWLRRNK

XP_038887440.1 uncharacterized protein LOC120077574 [Benincasa hispida]

1.8e-41

78.95

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ------SAAAAASDIGRRGLLFSAVAAAVA----PVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRN
        MSSIGQSILMALAVT+NKFASSNVQSV RNQ      + A   S IGRRGLL SAVAAA A     VDSRTELLKRYLKKSE+NKEKNDKERL+SYYKRN
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ------SAAAAASDIGRRGLLFSAVAAAVA----PVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRN

Query:  YKDYFEFVEGSVRNKSELSETEKDIIEWLRRNK
        YKDYFEFVEGSV+NK+ELSE EK IIEWL+RNK
Subjt:  YKDYFEFVEGSVRNKSELSETEKDIIEWLRRNK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C176 uncharacterized protein LOC103495319

6.6e-42

78.91

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAV-----AAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYF
        MSSIGQSILMALAVT+NKFASSNVQSV RN++ A  +S IGRR LL S V     AAA A VDSRTELLKRYLKKSE+NKEKNDKERL+SYYKRNYKDYF
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAV-----AAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYF

Query:  EFVEGSVRNKSELSETEKDIIEWLRRNK
        EFVEGSV+NK+ELSE EK I+EWL+RNK
Subjt:  EFVEGSVRNKSELSETEKDIIEWLRRNK

A0A2I4HLI8 uncharacterized protein LOC109019213

1.7e-34

68.46

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDY
        MSSIGQSILMAL VTVN+FASSNVQ+VHR +      +     SDIGRR LL S + AA    DSRT+LLK+YLKKSE+NK KNDKERLDSYYKRNYKDY
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDY

Query:  FEFVEGSVR-NKSELSETEKDIIEWLRRNK
        FEFVEG+ + N+ +LSE EK II+WL+RNK
Subjt:  FEFVEGSVR-NKSELSETEKDIIEWLRRNK

A0A6J1D574 uncharacterized protein LOC111017388 isoform X1

4.0e-55

100

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEG
        MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEG
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEG

Query:  SVRNKSELSETEKDIIEWLRRNK
        SVRNKSELSETEKDIIEWLRRNK
Subjt:  SVRNKSELSETEKDIIEWLRRNK

A0A6J1EM63 uncharacterized protein LOC111434615

9.9e-38

71.11

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ------------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYK
        MSSIGQ+ILMALA+T+N+FASSNVQSV RN+            ++ +A+SDI RRGLL SA  AA   VDSRTELLKRYLKKSE+NKEKNDKERL+S+YK
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ------------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYK

Query:  RNYKDYFEFVEGSVRNKSELSETEKDIIEWLRRNK
        RNYKDYFEFVEGS++NK ELSE EK IIEWL+RNK
Subjt:  RNYKDYFEFVEGSVRNKSELSETEKDIIEWLRRNK

A0A6J1JNZ7 uncharacterized protein LOC111486201

3.4e-38

73.85

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ-------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKD
        MSSIGQ+ILMALA+T+N+FASSNVQSV RN+       +  +A+SDI RRGLL SA  AA   VDSRTELLKRYLKKSE+NKEKNDKERL+S+YKRNYKD
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ-------SAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKD

Query:  YFEFVEGSVRNKSELSETEKDIIEWLRRNK
        YFEFVEGS++NK ELSE EK IIEWL+RNK
Subjt:  YFEFVEGSVRNKSELSETEKDIIEWLRRNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

5.9e-35

63.57

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Query:  MSSIGQSILMALAVTVNKFASSNVQSVHRN----QSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFE
        MSSI QSILMAL VTVNK+ASSNVQ+V RN     S  A  +D+GRR +LFS+ +   A + S  +LL++YLKK+E+NK KNDKERLDS+YKRNYKDYFE
Subjt:  MSSIGQSILMALAVTVNKFASSNVQSVHRN----QSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFE

Query:  FVEGSVRNK--SELSETEKDIIEWLRRNK
        FVEGS++ K  +ELSE+EK I+EWL+ NK
Subjt:  FVEGSVRNK--SELSETEKDIIEWLRRNK

Sequences

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CDS sequence

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ATGAGTTCAATCGGCCAAAGCATTCTGATGGCGCTCGCCGTCACCGTCAACAAATTCGCTTCCTCCAACGTTCAATCCGTCCACAGAAACCAATCAGCCGCCGCCGCCGC
TTCCGACATCGGAAGAAGAGGCCTCCTCTTCTCCGCCGTCGCCGCCGCCGTCGCCCCCGTCGACTCCAGAACCGAGCTGCTCAAAAGGTATCTCAAGAAATCTGAACAAA
ACAAAGAAAAAAATGACAAGGAGAGATTGGATAGTTACTACAAGCGAAATTACAAAGATTATTTTGAATTCGTTGAAGGATCGGTGAGGAATAAGAGCGAGCTTTCAGAA
ACTGAGAAAGACATTATTGAGTGGCTTCGACGAAACAAGTGA

mRNA sequence

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Protein sequence

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MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEGSVRNKSELSE
TEKDIIEWLRRNK

Moc04g07690 (gene) of Bitter gourd (OHB3-1) v2 genome