CuGenDBv2

Gene ID	Moc04g07720
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1
Genome location	chr4:5528339..5531151
RNA-Seq Expression	Moc04g07720
Synteny	Moc04g07720
Gene Ontology terms	GO:0009787 - regulation of abscisic acid-activated signaling pathway (biological process) GO:0010100 - negative regulation of photomorphogenesis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domains	IPR039324 - Protein SHORT HYPOCOTYL IN WHITE LIGHT 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588721.1 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-88

87.86

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Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  H Q    +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GGEDD ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_022148690.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia]

7.7e-106

100

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Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_022927841.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]

3.2e-88

87.86

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Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  H Q    +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GGEDD ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_022988955.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]

8.5e-89

87.86

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Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  + QP   +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GGEDD ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

XP_038877542.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]

7.2e-88

85.44

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Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MS  AALSPPSLFSIPQ   QP F +SRTSLLSHPFQISHTLLRASRR SNFSQGVDNLVDDRRNWNR I SDFD++GGE++E+D++++EDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVS+RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFL+VICTLGTAVF+SILIIRGVWTGILYLQD R+HR DQLD++QH AWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQP S
Subjt:  GAQPAS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D3L5 protein SHORT HYPOCOTYL IN WHITE LIGHT 1

3.7e-106

100

Show/hide

Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

A0A6J1EIN7 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

1.6e-88

87.86

Show/hide

Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  H Q    +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GGEDD ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

A0A6J1GJK6 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

1.5e-83

83.5

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Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MS  AA SPPSLF++PQY  QP F +SRT LLSHPFQ+SH LLRASRR SNFSQGVD+ VDDRRNWN  I SDFD++GGE++EE+EED EDEEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LV+FVENVFRKVS+RARKAVRSVLPQSIPTKLVGF VNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVW GILYLQDIRSHR DQLD++Q HAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

A0A6J1I8W5 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

8.9e-84

83.65

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Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDE--EEDRSL
        MS   A SPPSLF++PQY  QP F +SRT LLS PFQISH LLRASRR SNFSQGVDN VDDRRNWN  I SDFD++GGE++E +EEDEEDE  EEDRSL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDE--EEDRSL

Query:  DLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHA
        DLLV+FVENVFRKVS+RARKAVRSVLPQSIPTKLVGF VNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLD++Q HA
Subjt:  DLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHA

Query:  WTGAQPAS
        WTGAQPAS
Subjt:  WTGAQPAS

A0A6J1JL13 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

4.1e-89

87.86

Show/hide

Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL
        MS PAALSPPSL+SIP  + QP   +SRTS+LSH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR ISSDFDI+GGEDD ED+EDEE+EEEDRSLDL
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDL

Query:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT
        LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LD++QHHAWT
Subjt:  LVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

SwissProt top hits

e value

%identity

Alignment

F4I3V6 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1

3.1e-17

36.67

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Query:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEDDEEDEEDEEDEEEDRSLDLL
        +++ T+L S     S TL+ AS R  + +    N +  RR +   NR ++S                    ++D+V  +D   D++DEEDE E  S+DLL
Subjt:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEDDEEDEEDEEDEEEDRSLDLL

Query:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQ
        +RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L + +AFL+VIC LG  VF  IL+IR  W    + Q
Subjt:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G69935.1 short hypocotyl in white light1

2.2e-18

36.67

Show/hide

Query:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEDDEEDEEDEEDEEEDRSLDLL
        +++ T+L S     S TL+ AS R  + +    N +  RR +   NR ++S                    ++D+V  +D   D++DEEDE E  S+DLL
Subjt:  SSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNW---NRPISS--------------------DFDIVGGEDDEEDEEDEEDEEEDRSLDLL

Query:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQ
        +RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L + +AFL+VIC LG  VF  IL+IR  W    + Q
Subjt:  VRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQ

AT4G33780.1 FUNCTIONS IN: molecular_function unknown

3.9e-47

54.11

Show/hide

Query:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEED-EEEDRSLD
        M F A++S PS            F  +  +L+    +IS     ASRR  +F  G D+  DD R+WNR I  ++   G ++D + EED++D EEEDRSLD
Subjt:  MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEED-EEEDRSLD

Query:  LLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAW
        LL+RFVENVFRK+SKRARKAVRS+LP SI TKLVGFSVNGVL+LAFLW+LKAFL+V CTLGT VF SIL+IRG+W G+ Y+Q+ R++R ++L ++   AW
Subjt:  LLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAW

Query:  TGAQPAS
         G QP S
Subjt:  TGAQPAS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCCTTTCCCGCCGCTCTTTCACCGCCGTCCCTCTTCTCCATACCTCAATACCATTTTCAACCGCTATTTTCAAGCTCTCGAACCTCGCTTCTCTCCCATCCCTTCCA
AATCTCTCACACGCTCCTCCGGGCTTCCAGAAGACCCTCCAATTTCTCTCAGGGAGTCGATAATTTGGTGGATGATCGGCGCAATTGGAACCGCCCGATTAGCTCTGACT
TCGACATAGTCGGTGGAGAGGACGACGAGGAGGACGAGGAGGACGAGGAGGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCGATTTGTTGAAAATGTTTTCAGG
AAGGTCTCGAAGCGAGCCCGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCCACCAAACTGGTGGGATTTTCTGTCAATGGGGTGCTAATGCTCGCGTTTTTGTG
GGTCTTGAAGGCATTTCTTCAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATTATCCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCC
GTAGCCACCGATTCGATCAACTCGACAACGAGCAGCATCATGCCTGGACTGGTGCACAGCCTGCATCCTGA

mRNA sequence

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Protein sequence

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MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDLLVRFVENVFR
KVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDNEQHHAWTGAQPAS

Moc04g07720 (gene) of Bitter gourd (OHB3-1) v2 genome