CuGenDBv2

Gene ID	Moc04g08920
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr4:6590609..6591460
RNA-Seq Expression	Moc04g08920
Synteny	Moc04g08920
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

PON65458.1 Zinc finger, CCHC-type, partial [Trema orientale]

4.8e-42

45.83

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Query:  GQNYGRGRNQSNRGHGYNQNRGGRGRGRLNNSS-KPTCQVCGKYGHSESYCYHRFDKEYMGSPNHSNNGGHNKAN---AFIATPKVVTDPIWYADSGATN
        G  Y  G N S RG G    RG RG GR N S+ KP CQVCGK GH    CYHRFD  Y G P+ S +     A+   A+IATP  V+D  WY DSGATN
Subjt:  GQNYGRGRNQSNRGHGYNQNRGGRGRGRLNNSS-KPTCQVCGKYGHSESYCYHRFDKEYMGSPNHSNNGGHNKAN---AFIATPKVVTDPIWYADSGATN

Query:  HSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGR
        H T +   L+ + +Y G E LAVGNG+ L I+HIG S F  N +    L+LQN+LHVP + KNL+SISK T DNHV +EF  D C VK + +K +L++G 
Subjt:  HSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGR

Query:  VEDGLYHLKLPTNRPLQVTTHIYPEAINPSCFLSHSPVIY
        +++GLY L +    P   ++ +     N +  + H+P +Y
Subjt:  VEDGLYHLKLPTNRPLQVTTHIYPEAINPSCFLSHSPVIY

PON91412.1 Zinc finger, CCHC-type, partial [Trema orientale]

4.8e-42

45.64

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Query:  ECQLEHLNIIPKATDISAPGANLALSKYQ----GQNYGRG-RNQSNRGHGYNQNRGGRGRGRLNNSSKPTCQVCGKYGHSESYCYHRFDKEYMGSPNHSN
        E +LEHL +   + D+S+P A+L  + ++       Y RG  N   RG G    RGGRG       +KP CQVCGK GH    CYHRFD  + G  + S+
Subjt:  ECQLEHLNIIPKATDISAPGANLALSKYQ----GQNYGRG-RNQSNRGHGYNQNRGGRGRGRLNNSSKPTCQVCGKYGHSESYCYHRFDKEYMGSPNHSN

Query:  NGGHNKAN-AFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISK
            N+AN AF+ T   V D  WY DSGATNH T +L+NL+ Q +Y G E LAVGNG+ L I HIG S  + +      L L NILHVP++ KNL+SIS+
Subjt:  NGGHNKAN-AFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISK

Query:  LTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKL
         T DN   IEF+   C V  K T++ LL+G ++DGLY L L
Subjt:  LTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKL

TXG55646.1 hypothetical protein EZV62_020902 [Acer yangbiense]

7.4e-51

46.51

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Query:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD
        +L+++ +LEH+ N+  K   +S+P A+LA +K     N  +  NQ N   G N+  NRGG        RGRG  NN+S+PTCQVCGK+GHS S CY R+D
Subjt:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD

Query:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH
          YMGS   +N+   N  + F+ATP+ V D  WYADSGATNH T +  NL  +  Y G+E L VGNG  L I H+G  S      P  T H   L+ +LH
Subjt:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH

Query:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR
        VP++ KNLLS+S+L  DN VFIEFH + C VK K+T+  +L GR+++GLY L++PT +
Subjt:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR

TXG67243.1 hypothetical protein EZV62_008518 [Acer yangbiense]

4.8e-50

46.12

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Query:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD
        +L+++ +LEH+ N+  K   +S+P A+LA +K     N  +  NQ N   G N+  NRGG        RGRG  NN+S+PTCQVCGK+GHS S CY R+D
Subjt:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD

Query:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH
          YMGS   +N+   N  + F+ATP+ V D  WYADSGAT+H T +  NL  + +Y G+E L VGNG  L I H+G  S      P  T H   L+ +LH
Subjt:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH

Query:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR
        VP++ KNLLS+S+L  DN VFIEFH + C VK K+T   +L GR+++GLY L++PT +
Subjt:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR

TXG69253.1 hypothetical protein EZV62_004188 [Acer yangbiense]

1.3e-50

46.51

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Query:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD
        +L+++ +LEH+ N+  K   +S+P A+LA +K     N  +  NQ N   G N+  NRGG        RGRG  NN+S+PTCQVCGK+GHS S CY R+D
Subjt:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD

Query:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH
          YMGS   +N+   N  + F+ATP+ V D  WYADSGATNH T +  NL  + +Y G+E L VGNG  L I H+G  S      P  T H   L+ +LH
Subjt:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH

Query:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR
        VP++ KNLLS+S+L  DN VFIEFH + C VK K+T   +L GR+++GLY L++PT +
Subjt:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR

TrEMBL top hits

e value

%identity

Alignment

A0A5C7HHE9 Uncharacterized protein

3.6e-51

46.51

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Query:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD
        +L+++ +LEH+ N+  K   +S+P A+LA +K     N  +  NQ N   G N+  NRGG        RGRG  NN+S+PTCQVCGK+GHS S CY R+D
Subjt:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD

Query:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH
          YMGS   +N+   N  + F+ATP+ V D  WYADSGATNH T +  NL  +  Y G+E L VGNG  L I H+G  S      P  T H   L+ +LH
Subjt:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH

Query:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR
        VP++ KNLLS+S+L  DN VFIEFH + C VK K+T+  +L GR+++GLY L++PT +
Subjt:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR

A0A5C7ID32 Uncharacterized protein

2.3e-50

46.12

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Query:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD
        +L+++ +LEH+ N+  K   +S+P A+LA +K     N  +  NQ N   G N+  NRGG        RGRG  NN+S+PTCQVCGK+GHS S CY R+D
Subjt:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD

Query:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH
          YMGS   +N+   N  + F+ATP+ V D  WYADSGAT+H T +  NL  + +Y G+E L VGNG  L I H+G  S      P  T H   L+ +LH
Subjt:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH

Query:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR
        VP++ KNLLS+S+L  DN VFIEFH + C VK K+T   +L GR+++GLY L++PT +
Subjt:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR

A0A5C7IJ06 Uncharacterized protein

6.1e-51

46.51

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Query:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD
        +L+++ +LEH+ N+  K   +S+P A+LA +K     N  +  NQ N   G N+  NRGG        RGRG  NN+S+PTCQVCGK+GHS S CY R+D
Subjt:  MLAFECQLEHL-NIIPKATDISAPGANLALSKYQG-QNYGRGRNQSNRGHGYNQ--NRGG--------RGRGRLNNSSKPTCQVCGKYGHSESYCYHRFD

Query:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH
          YMGS   +N+   N  + F+ATP+ V D  WYADSGATNH T +  NL  + +Y G+E L VGNG  L I H+G  S      P  T H   L+ +LH
Subjt:  KEYMGSPNHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLH---LQNILH

Query:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR
        VP++ KNLLS+S+L  DN VFIEFH + C VK K+T   +L GR+++GLY L++PT +
Subjt:  VPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNR

A0A803P4G6 Uncharacterized protein

2.9e-48

44.98

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Query:  MLAFECQLEHLNII--PKATDISAPGANLALSKYQGQNYGRG---RNQSNRGHGYNQNRGGRGRGRLNNSSKPTCQVCGKYGHSESYCYHRFDKEYMGSP
        +L+F+ ++E +  +  PK T          ++K   Q  GRG   +NQ+N   G       RGRGR NN+S+PTCQVCGK+GHS + CY+R+D+ +MG  
Subjt:  MLAFECQLEHLNII--PKATDISAPGANLALSKYQGQNYGRG---RNQSNRGHGYNQNRGGRGRGRLNNSSKPTCQVCGKYGHSESYCYHRFDKEYMGSP

Query:  NHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLS
         ++ N      NAFIATPK++    W+ DSGA+NH T    ++SQ+ EY G E L VG+G+ L I HIG + F+  TN    L L+ +LHVP + KNL+S
Subjt:  NHSNNGGHNKANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLS

Query:  ISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNRP
        + KLT DN+V IEF+ D CLVK K TK+VLL+G ++DGLY ++ P  +P
Subjt:  ISKLTRDNHVFIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNRP

A0A803PHM7 Uncharacterized protein

4.6e-46

47.68

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Query:  GQNYGRGRNQSNRGHGYNQNR---GGRGRGRLNNSSKPTCQVCGKYGHSESYCYHRFDKEYM-----GSPNHSNNGGHNKANAFIATPKVVTDPIWYADS
        G N+G+G N+   G   N NR   GGRGRG      KPTCQVCG+YGHS +YCY+R+ + +M     G+ N SN  G N A AF+ATP+++ D  WYADS
Subjt:  GQNYGRGRNQSNRGHGYNQNR---GGRGRGRLNNSSKPTCQVCGKYGHSESYCYHRFDKEYM-----GSPNHSNNGGHNKANAFIATPKVVTDPIWYADS

Query:  GATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVL
        GA+NH T E ANL+Q+++Y+G + L VG+GN L I+HIG S F+P T+  ++L L+ +LHVP + KNL+SISKLT DN+V +EF  D C VK   TK+ +
Subjt:  GATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKVTKRVL

Query:  LEGRVEDGLYHL-KLPTNRPLQVTTHIYPEAINPSCF
        L+G++++GLY           Q TT +      P+CF
Subjt:  LEGRVEDGLYHL-KLPTNRPLQVTTHIYPEAINPSCF

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

7.3e-17

29.75

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Query:  IIP-KATDISAPGANLALSKYQGQNYGRGRNQSNRGHGYNQNRGGRGRGRLNNSSKP---TCQVCGKYGHSESYC---YHRFDKEYMGSPNHSNNGGHNK
        +IP  A  +S        +   G    R  N++N  +     +        NN SKP    CQ+CG  GHS   C    H         P         +
Subjt:  IIP-KATDISAPGANLALSKYQGQNYGRGRNQSNRGHGYNQNRGGRGRGRLNNSSKP---TCQVCGKYGHSESYC---YHRFDKEYMGSPNHSNNGGHNK

Query:  ANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHV
        AN  + +P   +   W  DSGAT+H T +  NLS    Y G + + V +G+ + I H G +S    + P   L+L NIL+VP++ KNL+S+ +L   N V
Subjt:  ANAFIATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHV

Query:  FIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNRPLQV
         +EF      VK   T   LL+G+ +D LY   + +++P+ +
Subjt:  FIEFHFDKCLVKYKVTKRVLLEGRVEDGLYHLKLPTNRPLQV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

8.9e-15

29.3

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Query:  QNYGRGRNQSNRGHGYNQNRGGR----------GRGRLNNSSKP---TCQVCGKYGHSESYC--YHRFDKEYMGSPNHSN-NGGHNKANAFIATPKVVTD
        +N    RNQ+NRG   N N              G    N   KP    CQ+C   GHS   C   H+F        + S       +AN  + +P    +
Subjt:  QNYGRGRNQSNRGHGYNQNRGGR----------GRGRLNNSSKP---TCQVCGKYGHSESYC--YHRFDKEYMGSPNHSN-NGGHNKANAFIATPKVVTD

Query:  PIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKY
          W  DSGAT+H T +  NLS    Y G + + + +G+ + I H G +S +P ++   +L L  +L+VP++ KNL+S+ +L   N V +EF      VK 
Subjt:  PIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKY

Query:  KVTKRVLLEGRVEDGLYHLKLPTNRPLQVTTHIYPEAINPSCFLSHSPVIYPSIFI
          T   LL+G+ +D LY   + +++ + +      +A + S    HS + +PS+ I
Subjt:  KVTKRVLLEGRVEDGLYHLKLPTNRPLQVTTHIYPEAINPSCFLSHSPVIYPSIFI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTGCATTCGAGTGCCAACTCGAACATCTCAACATAATTCCTAAAGCTACTGATATATCAGCACCAGGTGCAAACCTTGCCTTAAGCAAATATCAAGGACAAAACTA
TGGGAGAGGAAGAAACCAAAGCAACAGAGGTCATGGGTACAATCAAAATCGTGGAGGAAGAGGTCGTGGTCGATTAAATAACTCCAGCAAGCCCACTTGCCAAGTTTGCG
GCAAATACGGGCACTCCGAATCTTACTGCTATCACCGATTTGACAAGGAATACATGGGATCACCCAATCATTCTAATAATGGAGGACACAACAAGGCGAATGCCTTTATC
GCAACACCAAAAGTGGTGACTGATCCAATATGGTATGCTGACTCTGGAGCTACAAACCATAGCACACCCGAATTGGCAAATCTGAGCCAACAAGATGAATATCATGGTAA
TGAATTACTTGCTGTTGGTAATGGGAACTTGTTGAAAATCGAGCATATTGGTAAATCATCTTTTATTCCAAATACAAATCCTGAAACTACTTTACACTTGCAAAATATTC
TCCATGTACCTGATCTAATCAAAAATCTCTTGAGCATTTCAAAATTAACTAGAGATAATCATGTGTTTATTGAATTTCACTTTGATAAATGTCTTGTGAAGTACAAGGTA
ACCAAGAGGGTGTTGTTGGAAGGGAGGGTTGAAGATGGACTTTACCACCTAAAGCTGCCAACTAATAGGCCTCTCCAAGTCACCACCCATATTTATCCAGAAGCAATCAA
CCCATCATGTTTTCTTTCTCATTCTCCTGTCATTTATCCAAGTATCTTTATTTCTAAAATTGAGACAGTCTTAGGAATATGA

mRNA sequence

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Protein sequence

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MLAFECQLEHLNIIPKATDISAPGANLALSKYQGQNYGRGRNQSNRGHGYNQNRGGRGRGRLNNSSKPTCQVCGKYGHSESYCYHRFDKEYMGSPNHSNNGGHNKANAFI
ATPKVVTDPIWYADSGATNHSTPELANLSQQDEYHGNELLAVGNGNLLKIEHIGKSSFIPNTNPETTLHLQNILHVPDLIKNLLSISKLTRDNHVFIEFHFDKCLVKYKV
TKRVLLEGRVEDGLYHLKLPTNRPLQVTTHIYPEAINPSCFLSHSPVIYPSIFISKIETVLGI

Moc04g08920 (gene) of Bitter gourd (OHB3-1) v2 genome