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Moc04g09060 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g09060
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:6690962..6695781
RNA-Seq ExpressionMoc04g09060
SyntenyMoc04g09060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]2.3e-2643.5Show/hide
Query:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR----------SGEWFKCASLGLLEFCRYNEVALASHYADCSLWVAWDII-------
        L VPL S  LSH +CQ LLE+IVSRV SWSAR+ SFA  L LI+          S +  +CASLG LEF  YNE AL + Y    L++ W  +       
Subjt:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR----------SGEWFKCASLGLLEFCRYNEVALASHYADCSLWVAWDII-------

Query:  ---------SVRNAFRPLVRFAI-------------RDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
                  +R     +V F +             R+    ++  ++ L  VSSAW VLR  QP +PWFS +WF GNISKHSFIA L VRD+LAT DRL
Subjt:  ---------SVRNAFRPLVRFAI-------------RDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]1.7e-2143.41Show/hide
Query:  MELIRPILMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR---SGEWFKCASLGLLEFCRYNEVALASHYADCSLW-----------VA
        + L+   L V LLSR +SH +C+ LLERI+ RVR+WSAR+LSFA WL LIR          AS+ +L     ++V    H     LW           VA
Subjt:  MELIRPILMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR---SGEWFKCASLGLLEFCRYNEVALASHYADCSLW-----------VA

Query:  WDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
        W  IS                       ++ L  VS+A  VLR  +PP+PWFSLVWF GNI KHSFIA L +RD+LATRDRL
Subjt:  WDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]7.3e-1227.45Show/hide
Query:  CASLGLLEFCRYNEVALASH--------------------YADCSLWVAWDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQG-----------------
        C+ LGL+E C Y E ALAS                     Y DC  +V+  ++    +  P    +  DG+ CFVWH+ WL G                 
Subjt:  CASLGLLEFCRYNEVALASH--------------------YADCSLWVAWDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQG-----------------

Query:  --------------------------------------------------------VSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLAT
                                                                VSS WG+LR  +PP+ +F L+WF GNI KHSFI+ L +RD+L T
Subjt:  --------------------------------------------------------VSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLAT

Query:  RDRL
        R+RL
Subjt:  RDRL

XP_039005001.1 uncharacterized protein LOC120132276 [Hibiscus syriacus]3.1e-1028.5Show/hide
Query:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRSGEW----FKCASLGLLEFCRYNEVALASHYADCSL----------WVAWD---II
        L VPL++R LS  +C+ L+  I +R+  WS + LS+ G L L+R+  +    + C  L L +        L     D +L          W+AW+   +I
Subjt:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRSGEW----FKCASLGLLEFCRYNEVALASHYADCSL----------WVAWD---II

Query:  SVRNAFRPLVRFAIRDGKCCFVWH---------------NAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
          RN ++        + +  F W                +     V   W  +R+ +  +PW SL+WF  +I KHS IA + + D+L TRDRL
Subjt:  SVRNAFRPLVRFAIRDGKCCFVWH---------------NAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

XP_039068433.1 uncharacterized protein LOC120214662 [Hibiscus syriacus]4.0e-1027.96Show/hide
Query:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRS------------------GEWFKCAS------LGLLEFCRYNEVALASHY-----
        L +PLL+R +   +C +L++ I SR+  WS+++LS+AG L LIR+                    W K  S      LG+ +   +N+  + +       
Subjt:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRS------------------GEWFKCAS------LGLLEFCRYNEVALASHY-----

Query:  ADCSLWVAW--DIISVRNAF-------------------RPLVRFAIRDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLT
         + SLWVAW  + +   N F                   RP V+  +  G              SS W  +R     +PW  LVWF  +I KHS I  + 
Subjt:  ADCSLWVAW--DIISVRNAF-------------------RPLVRFAIRDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLT

Query:  VRDQLATRDRL
        + D+L T+DRL
Subjt:  VRDQLATRDRL

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932257.4e-1028.34Show/hide
Query:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRS---GEWFKCASLGLLEFCRYNEVAL------ASHYADC------------SLWVA
        L +PLL+  L   +C  L++RI SR+RS SARVLSFAG L L+ S         A + +L    +NE  L      A  +A              SLWVA
Subjt:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRS---GEWFKCASLGLLEFCRYNEVAL------ASHYADC------------SLWVA

Query:  W-------------------------DIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQ-----------------------------------------G
        W                          I+  +   +  VR  + +G  C VW + WLQ                                          
Subjt:  W-------------------------DIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQ-----------------------------------------G

Query:  VSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDR
        ++SAW  +R     + W  L+W  GNI KHSF A L ++D+L TRDR
Subjt:  VSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDR

A0A6J1D875 uncharacterized protein LOC1110178111.1e-2643.5Show/hide
Query:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR----------SGEWFKCASLGLLEFCRYNEVALASHYADCSLWVAWDII-------
        L VPL S  LSH +CQ LLE+IVSRV SWSAR+ SFA  L LI+          S +  +CASLG LEF  YNE AL + Y    L++ W  +       
Subjt:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR----------SGEWFKCASLGLLEFCRYNEVALASHYADCSLWVAWDII-------

Query:  ---------SVRNAFRPLVRFAI-------------RDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
                  +R     +V F +             R+    ++  ++ L  VSSAW VLR  QP +PWFS +WF GNISKHSFIA L VRD+LAT DRL
Subjt:  ---------SVRNAFRPLVRFAI-------------RDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

A0A6J1DTG0 uncharacterized protein LOC1110241658.4e-2243.41Show/hide
Query:  MELIRPILMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR---SGEWFKCASLGLLEFCRYNEVALASHYADCSLW-----------VA
        + L+   L V LLSR +SH +C+ LLERI+ RVR+WSAR+LSFA WL LIR          AS+ +L     ++V    H     LW           VA
Subjt:  MELIRPILMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIR---SGEWFKCASLGLLEFCRYNEVALASHYADCSLW-----------VA

Query:  WDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
        W  IS                       ++ L  VS+A  VLR  +PP+PWFSLVWF GNI KHSFIA L +RD+LATRDRL
Subjt:  WDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

A0A6J1E271 uncharacterized protein LOC1110253243.5e-1227.45Show/hide
Query:  CASLGLLEFCRYNEVALASH--------------------YADCSLWVAWDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQG-----------------
        C+ LGL+E C Y E ALAS                     Y DC  +V+  ++    +  P    +  DG+ CFVWH+ WL G                 
Subjt:  CASLGLLEFCRYNEVALASH--------------------YADCSLWVAWDIISVRNAFRPLVRFAIRDGKCCFVWHNAWLQG-----------------

Query:  --------------------------------------------------------VSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLAT
                                                                VSS WG+LR  +PP+ +F L+WF GNI KHSFI+ L +RD+L T
Subjt:  --------------------------------------------------------VSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLAT

Query:  RDRL
        R+RL
Subjt:  RDRL

A0A6P8CA30 uncharacterized protein LOC1161938277.4e-1028.57Show/hide
Query:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRSGEWFKCASLGLLEFCRYNEV--ALASHYADCSLWV-------------AWDIISV
        L VPL+S  L+   C+ L+ERI +R+  W+ + LS+AG L LI+S      A+L    F    +V  A+  ++ D    +              W  +  
Subjt:  LMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRSGEWFKCASLGLLEFCRYNEV--ALASHYADCSLWV-------------AWDIISV

Query:  RNAFRPLVRFAIRDGKCC------FVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
        R   R  +R  + + + C       +W  A    + S+WG +R    P+ W+ LVW+   I +HSFI  L + ++  T DR+
Subjt:  RNAFRPLVRFAIRDGKCC------FVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.4e-0538.3Show/hide
Query:  SSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
        ++ W  L      + WF  +WF G I KH+FIA + +R +L T+DR+
Subjt:  SSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.0e-0541.18Show/hide
Query:  GVSSA--WGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
        G SSA  W  L      + W   +WF G I KH+FI+ + +R +L TRD+L
Subjt:  GVSSA--WGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.9e-0637.31Show/hide
Query:  GKCCFVWHNA---WLQGVSS--AWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL
        G+  F+W NA   +L   SS   W  +R+  P +PW  +VWF   I + S I  ++  ++L TRDRL
Subjt:  GKCCFVWHNA---WLQGVSS--AWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTAATTCGACCGATTCTTATGGTTCCACTTCTTTCGCGCTGGCTTTCTCATTGCAATTGTCAGCTTTTGCTTGAGCGGATTGTCTCTCGTGTTCGAAGTTGGTC
GGCTCGGGTTCTTTCTTTTGCTGGCTGGTTGCATCTTATTCGATCGGGAGAGTGGTTTAAGTGTGCGTCGCTTGGCCTCTTGGAATTCTGCCGTTATAATGAAGTTGCTC
TAGCTTCTCATTACGCGGACTGCTCTCTTTGGGTGGCTTGGGATATTATTTCTGTTAGAAATGCTTTTCGACCTCTGGTTCGGTTTGCTATTAGAGATGGTAAGTGTTGT
TTTGTGTGGCATAACGCTTGGCTTCAAGGGGTGTCAAGTGCGTGGGGTGTGTTGCGACTGGCCCAGCCTCCTATTCCTTGGTTTTCTTTGGTTTGGTTCGATGGGAATAT
TTCGAAGCATTCTTTCATTGCTTCTTTGACGGTGCGTGATCAGCTTGCTACAAGGGATCGCTTATTTCTTCTGACCGAGTTTCATACTGGTCTAATGAGCTTGCTTGGGT
TTGTCACATTAGTGTCGGGAAGTGTGCTCGTCATCGTGTGCGGTGTTTGGCATGGACTTCGAATGTTTTTTTTATCTGAAGGGAGCATAATGCTAGAGTTCAAGCGAGTT
GAGTGGGTCGGTCGCCTTATATCCTCTTGCGCGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTAATTCGACCGATTCTTATGGTTCCACTTCTTTCGCGCTGGCTTTCTCATTGCAATTGTCAGCTTTTGCTTGAGCGGATTGTCTCTCGTGTTCGAAGTTGGTC
GGCTCGGGTTCTTTCTTTTGCTGGCTGGTTGCATCTTATTCGATCGGGAGAGTGGTTTAAGTGTGCGTCGCTTGGCCTCTTGGAATTCTGCCGTTATAATGAAGTTGCTC
TAGCTTCTCATTACGCGGACTGCTCTCTTTGGGTGGCTTGGGATATTATTTCTGTTAGAAATGCTTTTCGACCTCTGGTTCGGTTTGCTATTAGAGATGGTAAGTGTTGT
TTTGTGTGGCATAACGCTTGGCTTCAAGGGGTGTCAAGTGCGTGGGGTGTGTTGCGACTGGCCCAGCCTCCTATTCCTTGGTTTTCTTTGGTTTGGTTCGATGGGAATAT
TTCGAAGCATTCTTTCATTGCTTCTTTGACGGTGCGTGATCAGCTTGCTACAAGGGATCGCTTATTTCTTCTGACCGAGTTTCATACTGGTCTAATGAGCTTGCTTGGGT
TTGTCACATTAGTGTCGGGAAGTGTGCTCGTCATCGTGTGCGGTGTTTGGCATGGACTTCGAATGTTTTTTTTATCTGAAGGGAGCATAATGCTAGAGTTCAAGCGAGTT
GAGTGGGTCGGTCGCCTTATATCCTCTTGCGCGCCTTGA
Protein sequenceShow/hide protein sequence
MELIRPILMVPLLSRWLSHCNCQLLLERIVSRVRSWSARVLSFAGWLHLIRSGEWFKCASLGLLEFCRYNEVALASHYADCSLWVAWDIISVRNAFRPLVRFAIRDGKCC
FVWHNAWLQGVSSAWGVLRLAQPPIPWFSLVWFDGNISKHSFIASLTVRDQLATRDRLFLLTEFHTGLMSLLGFVTLVSGSVLVIVCGVWHGLRMFFLSEGSIMLEFKRV
EWVGRLISSCAP