; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g09590 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g09590
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:7094634..7099417
RNA-Seq ExpressionMoc04g09590
SyntenyMoc04g09590
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]3.1e-16042.3Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        M YVEA EEAFESSFQSFEIANATTLHGKFGRPKP LLET FKGDN SLDKLLRMAKNTKKFG+GYKPSRGDIIR RSLEKAKRLSR ENEERDYPRR V
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------------------------------------------
        PPLSHS RSAG IHQEYD S VVAAVTEEREQV PFVYPCPDGFELSNWSV                                                 
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------------------------------------------------LELP-------
                                                                                                 LE+P       
Subjt:  -----------------------------------------------------------------------------------------LELP-------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  SFHALETQEDSEENTVVVFGW--------------------KPLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFD
         F   ET+    E T     W                     P+K    K SLS RIAR QVLLS+YDIVYVTQKAIKGSAL DYLAQQPINDY+PV FD
Subjt:  SFHALETQEDSEENTVVVFGW--------------------KPLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFD

Query:  FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEW
        FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTA LCFDCTHNMA+YEAC MGVQAA+DMKVKKLKVFGDSMLVIHQLRGEW
Subjt:  FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEW

Query:  ETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASE
        ETRDVKLLPYKQLITELSQEF E+SFDYLPRENNQV DALATLAVMFNLELN DV PIKVGRRD PA CMSIEEEPDGNPWF+DIKQYI SKEYPPNASE
Subjt:  ETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASE

Query:  NDK
        NDK
Subjt:  NDK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]9.2e-16542.73Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        MSYVE  EEAFESSFQSFEIANATTLHGKFGRPKP LLET FKGDNGSLDKLLRMAKNTKKFG+GYKPSRGDIIR RSLEKAKRLSR ENEERDYPRRIV
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSF-----------------HALET---------------------
        PPL+HS RSAG IHQEYDES VVAAVTEEREQVGPFVY CPDGFELSNWSV++LPSF                 + L+T                     
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSF-----------------HALET---------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------QEDSEENT--------
                                                                                             ED E+ T        
Subjt:  ------------------------------------------------------------------------------------QEDSEENT--------

Query:  ---VVVFGWK------------------------------------------------------------------------------------------
           V+ FG K                                                                                          
Subjt:  ---VVVFGWK------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQ
                                                              P+K    KPSLSG IARWQVLLS+YDIVYVTQKAIKGSAL DYLAQ
Subjt:  ------------------------------------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQ

Query:  QPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGD
        QPINDY+PV FDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPL A LCFDC HNMA+YEAC MGVQAAIDMKVKKLKVFGD
Subjt:  QPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGD

Query:  SMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQY
        SMLVIHQLRGEWETRDVKLLPYKQ ITELSQEF EISFDYLPRENNQV DALATLAVMFNLELN DVRPIKVGRRD PA CMSIEEEPDG PWF+DIKQY
Subjt:  SMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQY

Query:  IKSKEYPPNASENDK
        IKSKEYPPNASENDK
Subjt:  IKSKEYPPNASENDK

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]2.9e-15842.57Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        M YVEA EEAFESSFQSFEIANATTLHGKFGRPKP LLE  FK +NGSLDKLLRMAKNT++FG+GYKP+RGDIIR RS+EKAKRLSR EN ERDY RR V
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------LELPSF------------------------------
        PPLSHS RSAG IHQEYDES V AAVTEEREQV PFVYPCPDGF+LSNWSV             L+ P +                              
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------LELPSF------------------------------

Query:  -----------------------------------------------------------HALETQ-----------------------------------
                                                                   H L T                                    
Subjt:  -----------------------------------------------------------HALETQ-----------------------------------

Query:  -------------------------------------------------------------------------EDSEENT-----------VVVFGWK--
                                                                                 ED E+ T           V+ FG K  
Subjt:  -------------------------------------------------------------------------EDSEENT-----------VVVFGWK--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEES
                                   P++    KPSLSGRIARWQVLLS+YDIVYVTQKAIKGSAL DYLAQQPINDY+PV FDFPDEYISTITASEES
Subjt:  ---------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEES

Query:  LDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLIT
        LDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTA LCFDCTHNMA+YEAC MGVQAA+DMKV K KVFGDSMLVIHQLRGEWE RDVKLLPYKQLIT
Subjt:  LDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLIT

Query:  ELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK
        ELSQEF EISFDYLPRENNQV DALATLAVMFNLELN DVRPIKVGRRD  A CMSIEEEPDGNPWF+DIKQYIKSKEYPPNASENDK
Subjt:  ELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK

XP_022157838.1 uncharacterized protein LOC111024452 [Momordica charantia]5.8e-14365.25Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        M YVEA EEAFESSFQSFE ANATTLHGKFGRPKP LLET FKGDNGSLDKLL MAKNTKKFG+G                                R +
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSFHALETQEDSEENTVVVFGWKPLKKSSSKPSLSGRIARWQVLLS
        PP SH  RSAG IHQEYDES VVAAVTEEREQ  P          L    V+     H L    + ++    +   +P      K  +  +I    + +S
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSFHALETQEDSEENTVVVFGWKPLKKSSSKPSLSGRIARWQVLLS

Query:  KY-----DIVYVTQK---AIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFD
         Y     +IV + +K   AIKGSAL DYLAQQPINDYVPV FDFPDEYISTI ASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTA LCFD
Subjt:  KY-----DIVYVTQK---AIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFD

Query:  CTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRP
        CTHNMA+YEAC MGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVK                         ENNQV DALATLAVMFNLELN DVRP
Subjt:  CTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRP

Query:  IKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK
        IKVGRRD PA CMSIEEEPDGNPWF+DIKQYIKSKEYPPNASENDK
Subjt:  IKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]4.9e-13490.8Show/hide
Query:  PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILIS
        P+K    KPSLSGRIARWQVLLS+YDIVYVT+KAIKGSAL DYLAQQPINDY+PV FDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIG ILIS
Subjt:  PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILIS

Query:  PKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALAT
        PKGELYPLTA LCFDCTHNMA+YEAC MGVQAA+DMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEF EISFDYLPRENNQV DALAT
Subjt:  PKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALAT

Query:  LAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK
        LAVMFNLELN DV PIKVGRRD PA CMSIEEEPDGNPWF++IK YIKSKEYPPNASENDK
Subjt:  LAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H1.5e-16042.3Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        M YVEA EEAFESSFQSFEIANATTLHGKFGRPKP LLET FKGDN SLDKLLRMAKNTKKFG+GYKPSRGDIIR RSLEKAKRLSR ENEERDYPRR V
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------------------------------------------
        PPLSHS RSAG IHQEYD S VVAAVTEEREQV PFVYPCPDGFELSNWSV                                                 
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------------------------------------------------LELP-------
                                                                                                 LE+P       
Subjt:  -----------------------------------------------------------------------------------------LELP-------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  SFHALETQEDSEENTVVVFGW--------------------KPLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFD
         F   ET+    E T     W                     P+K    K SLS RIAR QVLLS+YDIVYVTQKAIKGSAL DYLAQQPINDY+PV FD
Subjt:  SFHALETQEDSEENTVVVFGW--------------------KPLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFD

Query:  FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEW
        FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTA LCFDCTHNMA+YEAC MGVQAA+DMKVKKLKVFGDSMLVIHQLRGEW
Subjt:  FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEW

Query:  ETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASE
        ETRDVKLLPYKQLITELSQEF E+SFDYLPRENNQV DALATLAVMFNLELN DV PIKVGRRD PA CMSIEEEPDGNPWF+DIKQYI SKEYPPNASE
Subjt:  ETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASE

Query:  NDK
        NDK
Subjt:  NDK

A0A6J1D099 Ribonuclease H4.5e-16542.73Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        MSYVE  EEAFESSFQSFEIANATTLHGKFGRPKP LLET FKGDNGSLDKLLRMAKNTKKFG+GYKPSRGDIIR RSLEKAKRLSR ENEERDYPRRIV
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSF-----------------HALET---------------------
        PPL+HS RSAG IHQEYDES VVAAVTEEREQVGPFVY CPDGFELSNWSV++LPSF                 + L+T                     
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSF-----------------HALET---------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------QEDSEENT--------
                                                                                             ED E+ T        
Subjt:  ------------------------------------------------------------------------------------QEDSEENT--------

Query:  ---VVVFGWK------------------------------------------------------------------------------------------
           V+ FG K                                                                                          
Subjt:  ---VVVFGWK------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQ
                                                              P+K    KPSLSG IARWQVLLS+YDIVYVTQKAIKGSAL DYLAQ
Subjt:  ------------------------------------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQ

Query:  QPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGD
        QPINDY+PV FDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPL A LCFDC HNMA+YEAC MGVQAAIDMKVKKLKVFGD
Subjt:  QPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGD

Query:  SMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQY
        SMLVIHQLRGEWETRDVKLLPYKQ ITELSQEF EISFDYLPRENNQV DALATLAVMFNLELN DVRPIKVGRRD PA CMSIEEEPDG PWF+DIKQY
Subjt:  SMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQY

Query:  IKSKEYPPNASENDK
        IKSKEYPPNASENDK
Subjt:  IKSKEYPPNASENDK

A0A6J1D7C7 Ribonuclease H1.4e-15842.57Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        M YVEA EEAFESSFQSFEIANATTLHGKFGRPKP LLE  FK +NGSLDKLLRMAKNT++FG+GYKP+RGDIIR RS+EKAKRLSR EN ERDY RR V
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------LELPSF------------------------------
        PPLSHS RSAG IHQEYDES V AAVTEEREQV PFVYPCPDGF+LSNWSV             L+ P +                              
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSV-------------LELPSF------------------------------

Query:  -----------------------------------------------------------HALETQ-----------------------------------
                                                                   H L T                                    
Subjt:  -----------------------------------------------------------HALETQ-----------------------------------

Query:  -------------------------------------------------------------------------EDSEENT-----------VVVFGWK--
                                                                                 ED E+ T           V+ FG K  
Subjt:  -------------------------------------------------------------------------EDSEENT-----------VVVFGWK--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEES
                                   P++    KPSLSGRIARWQVLLS+YDIVYVTQKAIKGSAL DYLAQQPINDY+PV FDFPDEYISTITASEES
Subjt:  ---------------------------PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEES

Query:  LDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLIT
        LDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTA LCFDCTHNMA+YEAC MGVQAA+DMKV K KVFGDSMLVIHQLRGEWE RDVKLLPYKQLIT
Subjt:  LDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLIT

Query:  ELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK
        ELSQEF EISFDYLPRENNQV DALATLAVMFNLELN DVRPIKVGRRD  A CMSIEEEPDGNPWF+DIKQYIKSKEYPPNASENDK
Subjt:  ELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK

A0A6J1DUG0 Ribonuclease H2.8e-14365.25Show/hide
Query:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV
        M YVEA EEAFESSFQSFE ANATTLHGKFGRPKP LLET FKGDNGSLDKLL MAKNTKKFG+G                                R +
Subjt:  MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIV

Query:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSFHALETQEDSEENTVVVFGWKPLKKSSSKPSLSGRIARWQVLLS
        PP SH  RSAG IHQEYDES VVAAVTEEREQ  P          L    V+     H L    + ++    +   +P      K  +  +I    + +S
Subjt:  PPLSHSSRSAGIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSFHALETQEDSEENTVVVFGWKPLKKSSSKPSLSGRIARWQVLLS

Query:  KY-----DIVYVTQK---AIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFD
         Y     +IV + +K   AIKGSAL DYLAQQPINDYVPV FDFPDEYISTI ASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTA LCFD
Subjt:  KY-----DIVYVTQK---AIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFD

Query:  CTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRP
        CTHNMA+YEAC MGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVK                         ENNQV DALATLAVMFNLELN DVRP
Subjt:  CTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRP

Query:  IKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK
        IKVGRRD PA CMSIEEEPDGNPWF+DIKQYIKSKEYPPNASENDK
Subjt:  IKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK

A0A6J1E2J7 Ribonuclease H2.4e-13490.8Show/hide
Query:  PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILIS
        P+K    KPSLSGRIARWQVLLS+YDIVYVT+KAIKGSAL DYLAQQPINDY+PV FDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIG ILIS
Subjt:  PLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDYLAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILIS

Query:  PKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALAT
        PKGELYPLTA LCFDCTHNMA+YEAC MGVQAA+DMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEF EISFDYLPRENNQV DALAT
Subjt:  PKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALAT

Query:  LAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK
        LAVMFNLELN DV PIKVGRRD PA CMSIEEEPDGNPWF++IK YIKSKEYPPNASENDK
Subjt:  LAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDK

SwissProt top hitse value%identityAlignment
F9VN79 Ribonuclease HI2.9e-0426.74Show/hide
Query:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLA
        T+N+A+Y   +  ++  + + +    + GDS LVI Q+ GE++ +  +++P  +   EL ++    +  ++PRE N+  D L+ +A
Subjt:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLA

P64956 Uncharacterized protein Mb2253c8.2e-0727.52Show/hide
Query:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLE-LNTDVRP
        T+N+A+Y   + G+  A+ +   +  V  DS LV+ Q+ G W+ +   LL        L+ +F  I+++++PR  N   D LA  A+    +    D  P
Subjt:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLE-LNTDVRP

Query:  IKVGRRDAP
         K+   ++P
Subjt:  IKVGRRDAP

P9WLH4 Uncharacterized protein MT22878.2e-0727.52Show/hide
Query:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLE-LNTDVRP
        T+N+A+Y   + G+  A+ +   +  V  DS LV+ Q+ G W+ +   LL        L+ +F  I+++++PR  N   D LA  A+    +    D  P
Subjt:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLE-LNTDVRP

Query:  IKVGRRDAP
         K+   ++P
Subjt:  IKVGRRDAP

P9WLH5 Bifunctional protein Rv2228c8.2e-0727.52Show/hide
Query:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLE-LNTDVRP
        T+N+A+Y   + G+  A+ +   +  V  DS LV+ Q+ G W+ +   LL        L+ +F  I+++++PR  N   D LA  A+    +    D  P
Subjt:  THNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLE-LNTDVRP

Query:  IKVGRRDAP
         K+   ++P
Subjt:  IKVGRRDAP

Q9HSF6 Ribonuclease HI2.7e-1034.15Show/hide
Query:  FDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFG
        FDGAS  N     +G +L+S  G +           T+N A+Y+A +  ++AA D     +++ GDS LV  QL G W+T D  L   +    EL   F 
Subjt:  FDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQEFG

Query:  EISFDYLPRENNQVVDALATLAV
        + S  ++PR  N+  DALA  A+
Subjt:  EISFDYLPRENNQVVDALATLAV

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein2.6e-0830.46Show/hide
Query:  VNFDFPDEYISTITASEESLDPQTWTMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIH
        +++D P E +S +  S    D +T  + FDGAS  N    G  A+L +  G L           T+N A+Y A ++G++ AI+   K +KV GDS LV  
Subjt:  VNFDFPDEYISTITASEESLDPQTWTMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIH

Query:  QLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAV
        Q++G+W+     L    +    L  +       ++ R  N   D  A LAV
Subjt:  QLRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-1233.33Show/hide
Query:  TMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQ
        T+ FDGAS  N    G GA+L +    +         + T+N+A+Y A L+G+++A+D   K + V GDSMLV  Q++G W+T   K+    +   EL  
Subjt:  TMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQ

Query:  EFGEISFDYLPRENNQVVDALATLAV
         F      ++ RE N   D  A  A+
Subjt:  EFGEISFDYLPRENNQVVDALATLAV

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-1233.33Show/hide
Query:  TMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQ
        T+ FDGAS  N    G GA+L +    +         + T+N+A+Y A L+G+++A+D   K + V GDSMLV  Q++G W+T   K+    +   EL  
Subjt:  TMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQ

Query:  EFGEISFDYLPRENNQVVDALATLAV
         F      ++ RE N   D  A  A+
Subjt:  EFGEISFDYLPRENNQVVDALATLAV

AT5G51080.1 RNase H family protein8.4e-0728.91Show/hide
Query:  QTWTMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITE
        +T  + FDGAS  N    G  A+L +  G L           T+N A+Y   ++G++ AI+    K+KV  DS LV  Q++G+W+     L    +   +
Subjt:  QTWTMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITE

Query:  LSQEFGEISFDYLPRENNQVVDALATLA
        LS +       ++ R  N   D  A +A
Subjt:  LSQEFGEISFDYLPRENNQVVDALATLA

AT5G51080.2 RNase H family protein8.4e-0728.91Show/hide
Query:  QTWTMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITE
        +T  + FDGAS  N    G  A+L +  G L           T+N A+Y   ++G++ AI+    K+KV  DS LV  Q++G+W+     L    +   +
Subjt:  QTWTMMFDGAS--NELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITE

Query:  LSQEFGEISFDYLPRENNQVVDALATLA
        LS +       ++ R  N   D  A +A
Subjt:  LSQEFGEISFDYLPRENNQVVDALATLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATATGTTGAAGCAGTAGAAGAAGCTTTTGAGTCTTCATTCCAATCATTCGAGATTGCAAATGCTACAACTTTACATGGGAAGTTTGGGAGACCTAAGCCACCACT
TTTAGAGACCACCTTTAAAGGAGACAATGGGAGCTTAGACAAACTGCTGAGGATGGCTAAGAATACAAAGAAGTTCGGGGTGGGGTATAAACCAAGTAGAGGCGACATCA
TTAGAGCACGGAGTCTGGAAAAAGCAAAACGCCTCTCAAGACTTGAGAATGAGGAGCGTGATTACCCTAGGAGGATTGTTCCACCTCTCAGCCACTCTTCCAGAAGTGCC
GGCATAATCCATCAGGAGTACGATGAGAGCCCTGTAGTGGCAGCAGTGACAGAAGAAAGAGAGCAAGTCGGACCTTTTGTCTACCCATGTCCGGACGGTTTCGAGCTGAG
TAATTGGAGCGTGTTAGAGCTACCGTCTTTTCACGCTCTCGAGACCCAAGAGGATAGCGAGGAAAACACGGTGGTGGTGTTCGGGTGGAAACCGTTGAAGAAAAGTTCTT
CAAAGCCGTCTCTCTCGGGTCGAATTGCAAGGTGGCAGGTTCTCTTGTCCAAATATGATATTGTCTATGTGACTCAAAAGGCCATTAAGGGGAGTGCTTTGGTCGACTAC
CTAGCTCAACAACCTATAAATGACTACGTACCGGTAAATTTCGACTTTCCAGATGAGTATATCTCCACCATAACCGCAAGTGAGGAAAGTTTAGACCCACAAACTTGGAC
CATGATGTTTGATGGTGCCTCTAACGAGTTAGGTCATGGGATAGGGGCTATTTTGATATCACCCAAAGGGGAACTATACCCTCTTACCGCCAGTTTATGTTTTGACTGCA
CGCATAATATGGCCAAGTATGAAGCATGCTTGATGGGCGTCCAAGCTGCTATTGATATGAAGGTTAAGAAACTTAAAGTTTTTGGGGATTCTATGCTAGTAATTCATCAG
CTAAGAGGAGAATGGGAAACAAGAGACGTTAAGTTATTGCCTTACAAACAACTCATAACAGAATTGTCACAAGAATTTGGTGAAATCTCATTTGATTATTTGCCAAGAGA
AAATAATCAAGTAGTAGATGCATTGGCCACATTAGCAGTGATGTTCAATTTAGAACTCAATACAGATGTCCGTCCGATTAAAGTTGGGAGGAGAGATGCCCCAGCTTTTT
GTATGAGCATTGAGGAAGAACCCGACGGTAACCCCTGGTTTTATGACATCAAGCAGTATATCAAGAGTAAAGAATACCCACCAAATGCTTCAGAAAATGATAAGTCACCC
TCCGCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATATGTTGAAGCAGTAGAAGAAGCTTTTGAGTCTTCATTCCAATCATTCGAGATTGCAAATGCTACAACTTTACATGGGAAGTTTGGGAGACCTAAGCCACCACT
TTTAGAGACCACCTTTAAAGGAGACAATGGGAGCTTAGACAAACTGCTGAGGATGGCTAAGAATACAAAGAAGTTCGGGGTGGGGTATAAACCAAGTAGAGGCGACATCA
TTAGAGCACGGAGTCTGGAAAAAGCAAAACGCCTCTCAAGACTTGAGAATGAGGAGCGTGATTACCCTAGGAGGATTGTTCCACCTCTCAGCCACTCTTCCAGAAGTGCC
GGCATAATCCATCAGGAGTACGATGAGAGCCCTGTAGTGGCAGCAGTGACAGAAGAAAGAGAGCAAGTCGGACCTTTTGTCTACCCATGTCCGGACGGTTTCGAGCTGAG
TAATTGGAGCGTGTTAGAGCTACCGTCTTTTCACGCTCTCGAGACCCAAGAGGATAGCGAGGAAAACACGGTGGTGGTGTTCGGGTGGAAACCGTTGAAGAAAAGTTCTT
CAAAGCCGTCTCTCTCGGGTCGAATTGCAAGGTGGCAGGTTCTCTTGTCCAAATATGATATTGTCTATGTGACTCAAAAGGCCATTAAGGGGAGTGCTTTGGTCGACTAC
CTAGCTCAACAACCTATAAATGACTACGTACCGGTAAATTTCGACTTTCCAGATGAGTATATCTCCACCATAACCGCAAGTGAGGAAAGTTTAGACCCACAAACTTGGAC
CATGATGTTTGATGGTGCCTCTAACGAGTTAGGTCATGGGATAGGGGCTATTTTGATATCACCCAAAGGGGAACTATACCCTCTTACCGCCAGTTTATGTTTTGACTGCA
CGCATAATATGGCCAAGTATGAAGCATGCTTGATGGGCGTCCAAGCTGCTATTGATATGAAGGTTAAGAAACTTAAAGTTTTTGGGGATTCTATGCTAGTAATTCATCAG
CTAAGAGGAGAATGGGAAACAAGAGACGTTAAGTTATTGCCTTACAAACAACTCATAACAGAATTGTCACAAGAATTTGGTGAAATCTCATTTGATTATTTGCCAAGAGA
AAATAATCAAGTAGTAGATGCATTGGCCACATTAGCAGTGATGTTCAATTTAGAACTCAATACAGATGTCCGTCCGATTAAAGTTGGGAGGAGAGATGCCCCAGCTTTTT
GTATGAGCATTGAGGAAGAACCCGACGGTAACCCCTGGTTTTATGACATCAAGCAGTATATCAAGAGTAAAGAATACCCACCAAATGCTTCAGAAAATGATAAGTCACCC
TCCGCAAGTTAG
Protein sequenceShow/hide protein sequence
MSYVEAVEEAFESSFQSFEIANATTLHGKFGRPKPPLLETTFKGDNGSLDKLLRMAKNTKKFGVGYKPSRGDIIRARSLEKAKRLSRLENEERDYPRRIVPPLSHSSRSA
GIIHQEYDESPVVAAVTEEREQVGPFVYPCPDGFELSNWSVLELPSFHALETQEDSEENTVVVFGWKPLKKSSSKPSLSGRIARWQVLLSKYDIVYVTQKAIKGSALVDY
LAQQPINDYVPVNFDFPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTASLCFDCTHNMAKYEACLMGVQAAIDMKVKKLKVFGDSMLVIHQ
LRGEWETRDVKLLPYKQLITELSQEFGEISFDYLPRENNQVVDALATLAVMFNLELNTDVRPIKVGRRDAPAFCMSIEEEPDGNPWFYDIKQYIKSKEYPPNASENDKSP
SAS